Rroxscaffold_6G00396160

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017176
Physical Location & Seq
Forward (+)
17390808 .. 17398032
7225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396160.1

Sequence Viewer

Length: 780 bp
ATGGCAAGGGGCATCAAGCACCCGATTATTACACCAGTAGTGTGGAAACGAGACTTCTTTACAAAATCTCTGCCCAAACAACAGATGAATCTAAACACCACCACCACTACTACTACAGTGCCGAACTACCAGCTACAACATGCTAACATAGACATTTTCACGGACCAAATCAATTACTTGAAGCGAGAAATTCAGGAATCCACCGGCCGGAGTTGCTCTTCTTTCGAAGTTGTAGCTGCCGTGTTGTGGTTTTGTCGAACTAGGGCTGTGATTGTGTCAAACCACTCGAGGCAAAATACACAAGTAAAGCTGGTTTTCTTTGCTAATTGCCGTCACCTTGTCGACCCTCCATTGCCAAAAGGCTTCTATGGAAACTGTTTCTTCCCCGTCACGGTAACAGCTTCAAGTGAAGCACTGGCTCATTCGTTACTCGCTGATGTGGTGGAAATGATCCAAGAAGCCAAGGCTAAGCTTCCAAATGAGTTTACCAATTACATCAAAGTGGGTCATCAGATTGAGGATGAGGACCCGTTTGCCCCAGCTCTAAGTTACACAACGTTGTTTATATCGGAGTGGGGAAAACTAGGATTCAACCAGGTCGATTTCGGTTGGGGGTCACCAGATCATGTCATCCCTATACAAGCCTCTGCAATCATGCCGGCTGCAATTGTGGGGACTCTACCTTTGCCACAGAAAGGTATCCGTCTAATAACTTGGTGCGTGGAAGAGATCCATCACCAAACCTTTATTGATCACATAATGAAAATGATCGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016410 GO:0016740 GO:0016746 GO:0016747
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

259

Amino Acids

29.23

Weight (kDa)

7.72

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 20 - 213 5.7e-24 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62160
fragaria_vesca FvH4_1g26300
rosa_chinensis RchiOBHm_Chr3g0485971
rosa_laevigata RLG00000023118
rosa_multiflora Rmu_co8349471.1_g000001 Rmu_sc0000899.1_g000003
rosa_roxburghii Rroxscaffold_6G00396160
rosa_rugosa Rorug03G0223100
rosa_samantha Rh3AG272600 Rh3BG307200 Rh3CG305800 Rh3DG302100
rosa_wichuraiana Rw3G024170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 342
AclI AACGTT 1 cut(s) 557
AclWI GGATC 2 cut(s) 445, 724
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 189
AfiI CCNNNNNNNGG 4 cut(s) 207, 246, 391, 695
AgsI TTSAA 3 cut(s) 181, 405, 592
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 6 cut(s) 133, 236, 310, 401, 472, 542
AluI AGCT 6 cut(s) 133, 236, 310, 401, 472, 542
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 2 cut(s) 445, 724
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 236, 662
ApoI RAATTY 1 cut(s) 189
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
AspS9I GGNCC 2 cut(s) 163, 526
AsuHPI GGTGA 3 cut(s) 326, 609, 728
AsuII TTCGAA 1 cut(s) 225
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 2 cut(s) 163, 526
BbvI GCAGC 2 cut(s) 223, 649
BccI CCATC 1 cut(s) 741
BceAI ACGGC 2 cut(s) 224, 315
BciT130I CCWGG 1 cut(s) 596
BciVI GTATCC 1 cut(s) 710
BclI TGATCA 1 cut(s) 751
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 2 cut(s) 261, 584
BfmI CTRYAG 1 cut(s) 114
BfuI GTATCC 1 cut(s) 710
BisI GCNGC 2 cut(s) 237, 663
BlpI GCTNAGC 1 cut(s) 468
BlsI GCNGC 2 cut(s) 238, 664
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 2 cut(s) 163, 526
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 163, 526
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 596
BmsI GCATC 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 462
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 246, 391, 695
Bse118I RCCGGY 2 cut(s) 203, 658
Bse1I ACTGG 2 cut(s) 35, 420
Bse3DI GCAATG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 526, 630
BseLI CCNNNNNNNGG 4 cut(s) 207, 246, 391, 695
BseMI GCAATG 1 cut(s) 350
BseNI ACTGG 2 cut(s) 35, 420
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 2 cut(s) 223, 649
BseYI CCCAGC 1 cut(s) 538
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 3 cut(s) 204, 208, 659
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 4 cut(s) 207, 246, 391, 695
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 688
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 225
Bsp143I GATC 5 cut(s) 450, 622, 729, 751, 768
Bsp1720I GCTNAGC 1 cut(s) 468
BspANI GGCC 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 2 cut(s) 445, 724
BspQI GCTCTTC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 350
BsrFI RCCGGY 2 cut(s) 203, 658
BsrI ACTGG 2 cut(s) 35, 420
BssAI RCCGGY 2 cut(s) 203, 658
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 5 cut(s) 450, 622, 729, 751, 768
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 3 cut(s) 118, 377, 394
Bst6I CTCTTC 2 cut(s) 223, 720
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 2 cut(s) 468, 545
BstEII GGTNACC 1 cut(s) 615
BstF5I GGATG 2 cut(s) 526, 630
BstKTI GATC 5 cut(s) 453, 625, 732, 754, 771
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 5 cut(s) 450, 622, 729, 751, 768
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 1 cut(s) 143
BstPI GGTNACC 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 594
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 223, 649
BstX2I RGATCY 1 cut(s) 729
BstXI CCANNNNNNTGG 1 cut(s) 42
BstYI RGATCY 1 cut(s) 729
BstZI CGGCCG 1 cut(s) 205
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 526, 630
BtsIMutI CAGTG 2 cut(s) 123, 413
Cac8I GCNNGC 1 cut(s) 660
Cfr10I RCCGGY 2 cut(s) 203, 658
Cfr13I GGNCC 2 cut(s) 163, 526
CsiI ACCWGGT 1 cut(s) 594
CviAII CATG 3 cut(s) 140, 626, 655
DdeI CTNAG 2 cut(s) 468, 545
DpnI GATC 5 cut(s) 452, 624, 731, 753, 770
DpnII GATC 5 cut(s) 450, 622, 729, 751, 768
EaeI YGGCCR 1 cut(s) 205
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 223, 720
EarI CTCTTC 2 cut(s) 223, 720
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 462
Eco47I GGWCC 2 cut(s) 163, 526
Eco52I CGGCCG 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 526
EcoO65I GGTNACC 1 cut(s) 615
EcoRII CCWGG 1 cut(s) 594
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 3 cut(s) 143, 629, 658
FaiI YATR 8 cut(s) 141, 149, 369, 566, 627, 638, 656, 758
FaqI GGGAC 1 cut(s) 688
FatI CATG 3 cut(s) 139, 625, 654
FbaI TGATCA 1 cut(s) 751
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 237, 663
FokI GGATG 2 cut(s) 533, 617
Fsp4HI GCNGC 2 cut(s) 237, 663
FspBI CTAG 2 cut(s) 261, 584
GluI GCNGC 2 cut(s) 237, 663
GsaI CCCAGC 1 cut(s) 542
HaeIII GGCC 1 cut(s) 207
HapII CCGG 3 cut(s) 204, 208, 659
Hin1II CATG 3 cut(s) 143, 629, 658
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 4 cut(s) 88, 197, 588, 676
HpaII CCGG 3 cut(s) 204, 208, 659
HphI GGTGA 3 cut(s) 326, 609, 728
Hpy166II GTNNAC 2 cut(s) 343, 486
Hpy188I TCNGA 2 cut(s) 513, 571
Hpy188III TCNNGA 2 cut(s) 194, 772
Hpy8I GTNNAC 2 cut(s) 343, 486
HpyCH4III ACNGT 3 cut(s) 118, 377, 394
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 2 cut(s) 650, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 2 cut(s) 468, 545
HpySE526I ACGT 1 cut(s) 557
Hsp92II CATG 3 cut(s) 143, 629, 658
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 5 cut(s) 450, 622, 729, 751, 768
LguI GCTCTTC 1 cut(s) 223
Lsp1109I GCAGC 2 cut(s) 223, 649
LweI GCATC 1 cut(s) 21
MabI ACCWGGT 1 cut(s) 594
MaeI CTAG 2 cut(s) 261, 584
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 6 cut(s) 332, 388, 394, 426, 548, 615
MalI GATC 5 cut(s) 452, 624, 731, 753, 770
MboI GATC 5 cut(s) 450, 622, 729, 751, 768
MboII GAAGA 3 cut(s) 210, 373, 737
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 1 cut(s) 729
MluCI AATT 5 cut(s) 172, 189, 325, 490, 666
MlyI GAGTC 1 cut(s) 670
MnlI CCTC 5 cut(s) 282, 357, 511, 517, 655
MroNI GCCGGC 1 cut(s) 658
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 3 cut(s) 204, 208, 659
MspR9I CCNGG 1 cut(s) 596
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 1 cut(s) 596
MwoI GCNNNNNNNGC 1 cut(s) 213
NaeI GCCGGC 1 cut(s) 660
NdeII GATC 5 cut(s) 450, 622, 729, 751, 768
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 3 cut(s) 143, 629, 658
NlaIV GGNNCC 1 cut(s) 528
NmuCI GTSAC 3 cut(s) 332, 388, 615
NspI RCATGY 1 cut(s) 143
NspV TTCGAA 1 cut(s) 225
PaeR7I CTCGAG 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 660
PfeI GAWTC 3 cut(s) 88, 197, 588
PkrI GCNGC 2 cut(s) 238, 664
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
PpuMI RGGWCCY 1 cut(s) 526
Psp1406I AACGTT 1 cut(s) 557
Psp5II RGGWCCY 1 cut(s) 526
Psp6I CCWGG 1 cut(s) 594
PspEI GGTNACC 1 cut(s) 615
PspFI CCCAGC 1 cut(s) 538
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 2 cut(s) 163, 526
PspPPI RGGWCCY 1 cut(s) 526
PspXI VCTCGAGB 1 cut(s) 286
PsuI RGATCY 1 cut(s) 729
RseI CAYNNNNRTG 1 cut(s) 500
SalI GTCGAC 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 223
SatI GCNGC 2 cut(s) 237, 663
Sau3AI GATC 5 cut(s) 450, 622, 729, 751, 768
Sau96I GGNCC 2 cut(s) 163, 526
SchI GAGTC 1 cut(s) 670
ScrFI CCNGG 1 cut(s) 596
SexAI ACCWGGT 1 cut(s) 594
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 225
SinI GGWCC 2 cut(s) 163, 526
SlaI CTCGAG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 5 cut(s) 172, 189, 325, 490, 666
SspMI CTAG 2 cut(s) 261, 584
StyD4I CCNGG 1 cut(s) 594
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 3 cut(s) 118, 377, 394
TaiI ACGT 1 cut(s) 560
TaqI TCGA 5 cut(s) 225, 256, 287, 342, 600
TasI AATT 5 cut(s) 172, 189, 325, 490, 666
TfiI GAWTC 3 cut(s) 88, 197, 588
TscAI CASTG 2 cut(s) 123, 420
TseFI GTSAC 3 cut(s) 332, 388, 615
TseI GCWGC 2 cut(s) 236, 662
Tsp45I GTSAC 3 cut(s) 332, 388, 615
TspDTI ATGAA 2 cut(s) 101, 776
TspGWI ACGGA 2 cut(s) 176, 692
TspRI CASTG 2 cut(s) 123, 420
VpaK11BI GGWCC 2 cut(s) 163, 526
XapI RAATTY 1 cut(s) 189
XceI RCATGY 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 2 cut(s) 261, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.