RLG00000023118

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017176
Physical Location & Seq
Forward (+)
18418032 .. 18419793
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023118

Sequence Viewer

Length: 1305 bp
ATGGCTTTCTCTGTGATCCGATCAAGCCAAAGCCTAGTTAGACCATGCGAGCAGACACCGATCGCCACTCTTGATTTATCGGAAATCGACAGCTTGCCCGTCCTAAGAAGCAATGCTCGAACACTGCATGTGTATAGACATGGGGAATATCACCAAGTAGCCAAAGTTATAAAAGAAGGTTTGTCGAAAGCATTGGTTCCATATTACCCTCTTGCAGGACGATTGAAAGAGTCTAATGTTAATGGTGGAGGTCAGCTTCAAGTTGAATGTAGTGGACAAGGTGTGTGGTTGGTCGAGGCATATGCTAATTGTTCACTTGATGCTGTGAATTACTTTGATGATACTGTTGACTCCCACTCGAACAAATATGATGATCTTCTTCCTCGAGGAGCTGAAGGACCTGACCTACTTCTACAAATGCAGGTGACTGAATTTGAATGTGGTGGATTCGTGGTTGGCATCAAATTCAGCCACAGCATCTGCGACGGCTTAGGATCTGCACAGTTTCTCAATGCTGTTGGCGAGATGGCAAGGAGCATCAAGCACCCGAGTATTACACCAGTAGTGTGGAAACGAGACTTCTTTACAAAATCTCTGCCCAAACAACAGATGAATCTAAACACCACCACCACTACTACTACAGTGACGAACTACCAGCTACAACATGCTAACATAGACATTTTCACGGACCAAATCAATTACTTGAAGCAAGAAATTCATGAATCCACCGGCCGGAGTTGCTCTTCTTTCGAAGTTGTGGCTGCTGTGTTGTGGATTTGTCGAACTAGGGCTGTGATTGTGTCAAACCACTCGAGGCAAAATACACAAGTAAAGCTGGTTTTCTTTGCTAATTGCCGTCACCTTGTCGACCCTCCATTGCCAAAAGGCTTCTATGGAAACTGTTTCTTCCCCGTCACGGTAACAGCTTCAAGTGAAGCACTGGCTCATTCGTTACTCGCTGATGTGGTGGAAATGATCCAAGAAGCCAAGGCTAAGCTTCCAAATGAGTTTACCAATTACATCAAAGAGGGTCATCAGATTGAGGATGAGGACCCGTTTGCCCCAGCTCTAAGTTACACAGAGTTGTTTATATCGGAGTGGGGAAAACTAGGATTCAACCAGGTCGATTTCGGTTGGGGGTCACCAGATCATGTCATCCCTATACAAGCCTCTGCAATCATGCCGGCTGCAATTGTGGGGACTCTACCTTTGCCACAGAAAGGTATCCGTCTAATAACTTGGTGCGTGGAAGAGATCCATCACCAAACCTTTATTGATCACATAATGAAAATGATCGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016410 GO:0016740 GO:0016746 GO:0016747
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

435

Amino Acids

48.27

Weight (kDa)

5.88

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 7 - 388 2.1e-64 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62160
fragaria_vesca FvH4_1g26300
rosa_chinensis RchiOBHm_Chr3g0485971
rosa_laevigata RLG00000023118
rosa_multiflora Rmu_co8349471.1_g000001 Rmu_sc0000899.1_g000003
rosa_roxburghii Rroxscaffold_6G00396160
rosa_rugosa Rorug03G0223100
rosa_samantha Rh3AG272600 Rh3BG307200 Rh3CG305800 Rh3DG302100
rosa_wichuraiana Rw3G024170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
AarI CACCTGC 1 cut(s) 412
AbsI CCTCGAGG 1 cut(s) 384
Acc36I ACCTGC 1 cut(s) 412
AccI GTMKAC 1 cut(s) 867
AclWI GGATC 4 cut(s) 10, 502, 970, 1249
AcoI YGGCCR 1 cut(s) 730
AcsI RAATTY 3 cut(s) 431, 464, 714
AcuI CTGAAG 1 cut(s) 414
AfiI CCNNNNNNNGG 4 cut(s) 215, 732, 916, 1220
AgsI TTSAA 7 cut(s) 226, 260, 266, 437, 706, 930, 1117
AjnI CCWGG 1 cut(s) 1119
AluBI AGCT 8 cut(s) 93, 256, 392, 658, 835, 926, 997, 1067
AluI AGCT 8 cut(s) 93, 256, 392, 658, 835, 926, 997, 1067
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 4 cut(s) 10, 502, 970, 1249
AlwNI CAGNNNCTG 1 cut(s) 480
Ama87I CYCGRG 3 cut(s) 384, 547, 811
AoxI GGCC 1 cut(s) 730
ApeKI GCWGC 2 cut(s) 761, 1187
ApoI RAATTY 3 cut(s) 431, 464, 714
ArsI GACNNNNNNTTYG 2 cut(s) 1192, 1224
AspS9I GGNCC 3 cut(s) 398, 688, 1051
AsuHPI GGTGA 5 cut(s) 143, 436, 851, 1134, 1253
AsuII TTCGAA 1 cut(s) 750
AvaI CYCGRG 3 cut(s) 384, 547, 811
AvaII GGWCC 3 cut(s) 398, 688, 1051
BbvI GCAGC 2 cut(s) 748, 1174
BccI CCATC 2 cut(s) 520, 1266
BceAI ACGGC 2 cut(s) 502, 840
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 1 cut(s) 1121
BciVI GTATCC 1 cut(s) 1235
BclI TGATCA 1 cut(s) 1276
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 3 cut(s) 35, 786, 1109
BfmI CTRYAG 1 cut(s) 639
BfuAI ACCTGC 1 cut(s) 412
BfuI GTATCC 1 cut(s) 1235
BisI GCNGC 2 cut(s) 762, 1188
BlpI GCTNAGC 1 cut(s) 993
BlsI GCNGC 2 cut(s) 763, 1189
Bme1390I CCNGG 1 cut(s) 1121
Bme18I GGWCC 3 cut(s) 398, 688, 1051
BmeT110I CYCGRG 3 cut(s) 384, 547, 811
BmgT120I GGNCC 3 cut(s) 398, 688, 1051
BmiI GGNNCC 2 cut(s) 198, 1053
BmrFI CCNGG 1 cut(s) 1121
BmsI GCATC 4 cut(s) 310, 468, 486, 546
Bpu10I CCTNAGC 1 cut(s) 490
Bpu1102I GCTNAGC 1 cut(s) 993
Bpu14I TTCGAA 1 cut(s) 750
BsaJI CCNNGG 1 cut(s) 987
Bsc4I CCNNNNNNNGG 4 cut(s) 215, 732, 916, 1220
Bse118I RCCGGY 2 cut(s) 728, 1183
Bse1I ACTGG 2 cut(s) 560, 945
Bse3DI GCAATG 2 cut(s) 118, 875
BseBI CCWGG 1 cut(s) 1121
BseDI CCNNGG 1 cut(s) 987
BseGI GGATG 2 cut(s) 1051, 1155
BseLI CCNNNNNNNGG 4 cut(s) 215, 732, 916, 1220
BseMI GCAATG 2 cut(s) 118, 875
BseNI ACTGG 2 cut(s) 560, 945
BseRI GAGGAG 1 cut(s) 402
BseX3I CGGCCG 1 cut(s) 730
BseXI GCAGC 2 cut(s) 748, 1174
BseYI CCCAGC 1 cut(s) 1063
BsgI GTGCAG 1 cut(s) 483
Bsh1285I CGRYCG 2 cut(s) 63, 733
BshFI GGCC 1 cut(s) 732
BsiEI CGRYCG 2 cut(s) 63, 733
BsiHKCI CYCGRG 3 cut(s) 384, 547, 811
BsiSI CCGG 3 cut(s) 729, 733, 1184
BslFI GGGAC 1 cut(s) 1213
BslI CCNNNNNNNGG 4 cut(s) 215, 732, 916, 1220
BsmAI GTCTC 1 cut(s) 570
BsmFI GGGAC 1 cut(s) 1213
BsnI GGCC 1 cut(s) 732
BsoBI CYCGRG 3 cut(s) 384, 547, 811
Bsp119I TTCGAA 1 cut(s) 750
Bsp1720I GCTNAGC 1 cut(s) 993
BspANI GGCC 1 cut(s) 732
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 2 cut(s) 198, 1053
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 4 cut(s) 10, 502, 970, 1249
BspQI GCTCTTC 1 cut(s) 748
BspT104I TTCGAA 1 cut(s) 750
BsrDI GCAATG 2 cut(s) 118, 875
BsrFI RCCGGY 2 cut(s) 728, 1183
BsrI ACTGG 2 cut(s) 560, 945
BssAI RCCGGY 2 cut(s) 728, 1183
BssECI CCNNGG 1 cut(s) 987
BssT1I CCWWGG 1 cut(s) 987
Bst2UI CCWGG 1 cut(s) 1121
Bst4CI ACNGT 5 cut(s) 346, 504, 643, 902, 919
Bst6I CTCTTC 2 cut(s) 748, 1245
BstBI TTCGAA 1 cut(s) 750
BstC8I GCNNGC 3 cut(s) 50, 95, 1185
BstDEI CTNAG 4 cut(s) 104, 490, 993, 1070
BstEII GGTNACC 1 cut(s) 1140
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 1051, 1155
BstMAI GTCTC 1 cut(s) 570
BstMCI CGRYCG 2 cut(s) 63, 733
BstMWI GCNNNNNNNGC 1 cut(s) 738
BstNI CCWGG 1 cut(s) 1121
BstNSI RCATGY 2 cut(s) 131, 668
BstPI GGTNACC 1 cut(s) 1140
BstSCI CCNGG 1 cut(s) 1119
BstSFI CTRYAG 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 748, 1174
BstX2I RGATCY 2 cut(s) 494, 1254
BstXI CCANNNNNNTGG 1 cut(s) 567
BstYI RGATCY 2 cut(s) 494, 1254
BstZI CGGCCG 1 cut(s) 730
BsuI GTATCC 1 cut(s) 1235
BsuRI GGCC 1 cut(s) 732
BtsCI GGATG 2 cut(s) 1051, 1155
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 3 cut(s) 122, 648, 938
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 3 cut(s) 50, 95, 1185
CaiI CAGNNNCTG 1 cut(s) 480
CciI TCATGA 1 cut(s) 718
Cfr10I RCCGGY 2 cut(s) 728, 1183
Cfr13I GGNCC 3 cut(s) 398, 688, 1051
CsiI ACCWGGT 1 cut(s) 1119
CspCI CAANNNNNGTGG 2 cut(s) 266, 301
CviAII CATG 7 cut(s) 45, 128, 140, 665, 719, 1151, 1180
DdeI CTNAG 4 cut(s) 104, 490, 993, 1070
EaeI YGGCCR 1 cut(s) 730
EagI CGGCCG 1 cut(s) 730
Eam1104I CTCTTC 2 cut(s) 748, 1245
EarI CTCTTC 2 cut(s) 748, 1245
EclXI CGGCCG 1 cut(s) 730
Eco130I CCWWGG 1 cut(s) 987
Eco47I GGWCC 3 cut(s) 398, 688, 1051
Eco52I CGGCCG 1 cut(s) 730
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 3 cut(s) 384, 547, 811
Eco91I GGTNACC 1 cut(s) 1140
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoO109I RGGNCCY 2 cut(s) 398, 1051
EcoO65I GGTNACC 1 cut(s) 1140
EcoRII CCWGG 1 cut(s) 1119
EcoT14I CCWWGG 1 cut(s) 987
ErhI CCWWGG 1 cut(s) 987
FaeI CATG 7 cut(s) 48, 131, 143, 668, 722, 1154, 1183
FaqI GGGAC 1 cut(s) 1213
FatI CATG 7 cut(s) 44, 127, 139, 664, 718, 1150, 1179
FauNDI CATATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 1276
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 2 cut(s) 762, 1188
FokI GGATG 2 cut(s) 1058, 1142
Fsp4HI GCNGC 2 cut(s) 762, 1188
FspBI CTAG 3 cut(s) 35, 786, 1109
GluI GCNGC 2 cut(s) 762, 1188
GsaI CCCAGC 1 cut(s) 1067
HaeIII GGCC 1 cut(s) 732
HapII CCGG 3 cut(s) 729, 733, 1184
Hin1II CATG 7 cut(s) 48, 131, 143, 668, 722, 1154, 1183
HincII GTYRAC 2 cut(s) 349, 868
HindII GTYRAC 2 cut(s) 349, 868
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 7 cut(s) 230, 350, 447, 613, 722, 1113, 1201
HpaII CCGG 3 cut(s) 729, 733, 1184
HphI GGTGA 5 cut(s) 143, 436, 851, 1134, 1253
Hpy166II GTNNAC 5 cut(s) 275, 314, 349, 868, 1011
Hpy188I TCNGA 4 cut(s) 20, 82, 1038, 1096
Hpy188III TCNNGA 3 cut(s) 71, 719, 1297
Hpy8I GTNNAC 5 cut(s) 275, 314, 349, 868, 1011
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 170, 389
HpyCH4III ACNGT 5 cut(s) 346, 504, 643, 902, 919
HpyCH4V TGCA 6 cut(s) 127, 215, 421, 500, 1175, 1190
HpyF10VI GCNNNNNNNGC 1 cut(s) 738
HpyF3I CTNAG 4 cut(s) 104, 490, 993, 1070
Hsp92II CATG 7 cut(s) 48, 131, 143, 668, 722, 1154, 1183
KroI GCCGGC 1 cut(s) 1183
KroNI GCCGGC 1 cut(s) 1185
Ksp22I TGATCA 1 cut(s) 1276
LguI GCTCTTC 1 cut(s) 748
LmnI GCTCC 2 cut(s) 389, 534
Lsp1109I GCAGC 2 cut(s) 748, 1174
LweI GCATC 4 cut(s) 310, 468, 486, 546
MabI ACCWGGT 1 cut(s) 1119
MaeI CTAG 3 cut(s) 35, 786, 1109
MaeIII GTNAC 8 cut(s) 424, 643, 857, 913, 919, 951, 1073, 1140
MboII GAAGA 5 cut(s) 368, 371, 735, 898, 1262
MfeI CAATTG 1 cut(s) 1191
MflI RGATCY 2 cut(s) 494, 1254
MluCI AATT 9 cut(s) 307, 328, 431, 464, 697, 714, 850, 1015, 1191
MlyI GAGTC 3 cut(s) 239, 344, 1195
MroNI GCCGGC 1 cut(s) 1183
MseI TTAA 1 cut(s) 240
MspI CCGG 3 cut(s) 729, 733, 1184
MspR9I CCNGG 1 cut(s) 1121
MunI CAATTG 1 cut(s) 1191
MvaI CCWGG 1 cut(s) 1121
MwoI GCNNNNNNNGC 1 cut(s) 738
NaeI GCCGGC 1 cut(s) 1185
NdeI CATATG 1 cut(s) 301
NgoMIV GCCGGC 1 cut(s) 1183
NlaIII CATG 7 cut(s) 48, 131, 143, 668, 722, 1154, 1183
NlaIV GGNNCC 2 cut(s) 198, 1053
NmuCI GTSAC 5 cut(s) 424, 643, 857, 913, 1140
NspI RCATGY 2 cut(s) 131, 668
NspV TTCGAA 1 cut(s) 750
PaeR7I CTCGAG 2 cut(s) 384, 811
PagI TCATGA 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 748
PdiI GCCGGC 1 cut(s) 1185
PfeI GAWTC 4 cut(s) 447, 613, 722, 1113
PkrI GCNGC 2 cut(s) 763, 1189
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 3 cut(s) 238, 344, 1195
PpsI GAGTC 3 cut(s) 238, 344, 1195
PpuMI RGGWCCY 2 cut(s) 398, 1051
PsiI TTATAA 1 cut(s) 170
Psp5II RGGWCCY 2 cut(s) 398, 1051
Psp6I CCWGG 1 cut(s) 1119
PspEI GGTNACC 1 cut(s) 1140
PspFI CCCAGC 1 cut(s) 1063
PspGI CCWGG 1 cut(s) 1119
PspN4I GGNNCC 2 cut(s) 198, 1053
PspPI GGNCC 3 cut(s) 398, 688, 1051
PspPPI RGGWCCY 2 cut(s) 398, 1051
PspXI VCTCGAGB 2 cut(s) 384, 811
PstNI CAGNNNCTG 1 cut(s) 480
PsuI RGATCY 2 cut(s) 494, 1254
PvuI CGATCG 1 cut(s) 63
SalI GTCGAC 1 cut(s) 866
SapI GCTCTTC 1 cut(s) 748
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 762, 1188
Sau96I GGNCC 3 cut(s) 398, 688, 1051
SchI GAGTC 3 cut(s) 239, 344, 1195
ScrFI CCNGG 1 cut(s) 1121
SexAI ACCWGGT 1 cut(s) 1119
SfaNI GCATC 4 cut(s) 310, 468, 486, 546
SfcI CTRYAG 1 cut(s) 639
Sfr274I CTCGAG 2 cut(s) 384, 811
SfuI TTCGAA 1 cut(s) 750
SinI GGWCC 3 cut(s) 398, 688, 1051
SlaI CTCGAG 2 cut(s) 384, 811
SmlI CTYRAG 2 cut(s) 384, 811
SmoI CTYRAG 2 cut(s) 384, 811
Sse9I AATT 9 cut(s) 307, 328, 431, 464, 697, 714, 850, 1015, 1191
SspMI CTAG 3 cut(s) 35, 786, 1109
StyD4I CCNGG 1 cut(s) 1119
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 5 cut(s) 346, 504, 643, 902, 919
TasI AATT 9 cut(s) 307, 328, 431, 464, 697, 714, 850, 1015, 1191
TfiI GAWTC 4 cut(s) 447, 613, 722, 1113
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 3 cut(s) 129, 648, 945
TseFI GTSAC 5 cut(s) 424, 643, 857, 913, 1140
TseI GCWGC 2 cut(s) 761, 1187
Tsp45I GTSAC 5 cut(s) 424, 643, 857, 913, 1140
TspDTI ATGAA 4 cut(s) 626, 707, 735, 1301
TspGWI ACGGA 2 cut(s) 701, 1217
TspRI CASTG 3 cut(s) 129, 648, 945
VpaK11BI GGWCC 3 cut(s) 398, 688, 1051
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 3 cut(s) 431, 464, 714
XceI RCATGY 2 cut(s) 131, 668
XhoI CTCGAG 2 cut(s) 384, 811
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 3 cut(s) 35, 786, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.