Rh3CG305800

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017176
Physical Location & Seq
Reverse (-)
31911305 .. 31913358
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG305800.1

Sequence Viewer

Length: 1416 bp
ATGCACCGGATGGCTTTCTCTGTGATCCGATCAAGCCAAAGCCTAGTTAGACCATGCGAGCAGACACCGATCGCCACCCTTGATTTATCGGAAATCGACAGCTTGCCCGTCCTAAGAAGCAACGCTCGAACACTGCATGTGTATAGACATGGGGAATATCACCAAGTAGCCAAACTAATAAAAGAAGGTTTGTCGAAAGCATTGGTTCCATATTACCCTCTTGCAGGACGACTGAAAGTGTCTAATGTTAATGGTGGAGGTCAGCTTCAAGTTGAATGTAGTGGACAAGGTGTGTGGTTGGTCGAGGCATATGCTAATTGTTCACTTGATGCTGTCAATTACTTTGATGATACTGTTGCCTCCCACTCGAACAAATATGATGATCTTCTTCCTCGAGGAGCTGAAGGACTTGACCTACTTCTACAAATGCAGGTGACTGAATTTGAATGTGGTGGATTCGTGGTTGGCATCAAATTCAGCCACAGCATCTGCGACGGCTTAGGATCTGCACAGTTTCTCAATGCTGTTGGCGAGATGGCAAGGGGCATCAAGCACCCGAGTATTACACCAGTAGTGTGGAAACGAGACTTCTTTACAAAATCTCTGCCCAAACAACAGATGAATCTAAACACCACCACCACTACTACTACAGTGCCGAACTACCAGCTACAACATGCTAACATAGACATTTTCACGGACCAAATCAATTACTTGAAGCGAGAAATTCAGGAATCCACCGGCCGGAGTTGCTCTTCTTTCGAAGTTGTAGCTGCCGTGTTGTGGATTTGTCGAACTAGGGCTGTGATTGTGTCAAACCACTCGAGGCAAAATACACAAGTAAAGCTGGTTTTCTTTGCTAATTGCCGTCACCTTGTCGACCCTCCGTTGCCGAAAGGCTTCTATGGAAACTGTTTCTTCCCCGTCACGGTAACAGCTTCAAGTGAAGCACTGGGTCATTCGTTACTCACTGATGTGGTGGTAATGATCCAAGAAGCCAAGGCTAAGCTTCCAAATGAGTTTACCAATTACATCAAAGAGGGTCAACAGATTGAGGATGAGGACCCGTTTGCCCCAGCTCTAAGTTACACAACGTTGTTTATATCGGAGTGGGGAAAACTAGGATTCAACCAGGTCGATTTCGGTTGGGGGTCACCAGATCATGTCATCCCTATACAAGCCTCTGCAATCATGCCGGCTGCAATTGTGGGGACTCTACCTTTGCCACAGAAAGCTTTTATCGTAAAAGAAGATGAAAGTATGTACTCCTATATAAAAGTTAACAACTGTGAATATATGCATCCGATCAATGGAGTGGAAATGGTTGAAGATGTTTTTAAATGGGAACAAGAAATTGCTGACTTACTGATTAAGACTTATAAGTTGCCCAAGGCAGTCTCATACAAGCATGATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016410 GO:0016740 GO:0016746 GO:0016747
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

471

Amino Acids

52.59

Weight (kDa)

5.97

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 10 - 391 2.3e-63 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62160
fragaria_vesca FvH4_1g26300
rosa_chinensis RchiOBHm_Chr3g0485971
rosa_laevigata RLG00000023118
rosa_multiflora Rmu_co8349471.1_g000001 Rmu_sc0000899.1_g000003
rosa_roxburghii Rroxscaffold_6G00396160
rosa_rugosa Rorug03G0223100
rosa_samantha Rh3AG272600 Rh3BG307200 Rh3CG305800 Rh3DG302100
rosa_wichuraiana Rw3G024170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1377
AarI CACCTGC 1 cut(s) 421
AbsI CCTCGAGG 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 876
AclI AACGTT 1 cut(s) 1091
AclWI GGATC 3 cut(s) 19, 511, 979
AcoI YGGCCR 1 cut(s) 739
AcsI RAATTY 3 cut(s) 440, 473, 723
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 1 cut(s) 1262
AfiI CCNNNNNNNGG 5 cut(s) 224, 741, 780, 925, 1307
AgsI TTSAA 7 cut(s) 269, 275, 446, 715, 939, 1126, 1325
AjnI CCWGG 1 cut(s) 1128
AleI CACNNNNGTG 1 cut(s) 971
Alw26I GTCTC 2 cut(s) 579, 1399
AlwI GGATC 3 cut(s) 19, 511, 979
AlwNI CAGNNNCTG 1 cut(s) 489
Ama87I CYCGRG 3 cut(s) 393, 556, 820
AoxI GGCC 1 cut(s) 739
ApeKI GCWGC 2 cut(s) 770, 1196
ApoI RAATTY 3 cut(s) 440, 473, 723
ArsI GACNNNNNNTTYG 2 cut(s) 1201, 1233
Asp700I GAANNNNTTC 1 cut(s) 896
AspS9I GGNCC 2 cut(s) 697, 1060
AsuHPI GGTGA 4 cut(s) 152, 445, 860, 1143
AsuII TTCGAA 1 cut(s) 759
AvaI CYCGRG 3 cut(s) 393, 556, 820
AvaII GGWCC 2 cut(s) 697, 1060
BbvI GCAGC 2 cut(s) 757, 1183
BccI CCATC 2 cut(s) 4, 529
BceAI ACGGC 3 cut(s) 511, 758, 849
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 1130
BcoDI GTCTC 2 cut(s) 579, 1399
BfaI CTAG 3 cut(s) 44, 795, 1118
BfmI CTRYAG 1 cut(s) 648
BfuAI ACCTGC 1 cut(s) 421
BisI GCNGC 2 cut(s) 771, 1197
BlpI GCTNAGC 1 cut(s) 1002
BlsI GCNGC 2 cut(s) 772, 1198
Bme1390I CCNGG 1 cut(s) 1130
Bme18I GGWCC 2 cut(s) 697, 1060
BmeT110I CYCGRG 3 cut(s) 393, 556, 820
BmgT120I GGNCC 2 cut(s) 697, 1060
BmiI GGNNCC 2 cut(s) 207, 1062
BmrFI CCNGG 1 cut(s) 1130
BmrI ACTGGG 1 cut(s) 959
BmsI GCATC 5 cut(s) 319, 477, 495, 555, 1306
BmuI ACTGGG 1 cut(s) 959
Bpu10I CCTNAGC 1 cut(s) 499
Bpu1102I GCTNAGC 1 cut(s) 1002
Bpu14I TTCGAA 1 cut(s) 759
BsaJI CCNNGG 2 cut(s) 996, 1386
BsaWI WCCGGW 1 cut(s) 6
Bsc4I CCNNNNNNNGG 5 cut(s) 224, 741, 780, 925, 1307
Bse118I RCCGGY 2 cut(s) 737, 1192
Bse1I ACTGG 2 cut(s) 569, 954
BseBI CCWGG 1 cut(s) 1130
BseDI CCNNGG 2 cut(s) 996, 1386
BseGI GGATG 4 cut(s) 15, 1060, 1164, 1297
BseLI CCNNNNNNNGG 5 cut(s) 224, 741, 780, 925, 1307
BseNI ACTGG 2 cut(s) 569, 954
BseRI GAGGAG 1 cut(s) 411
BseX3I CGGCCG 1 cut(s) 739
BseXI GCAGC 2 cut(s) 757, 1183
BseYI CCCAGC 1 cut(s) 1072
BsgI GTGCAG 1 cut(s) 492
Bsh1285I CGRYCG 2 cut(s) 72, 742
BshFI GGCC 1 cut(s) 741
BsiEI CGRYCG 2 cut(s) 72, 742
BsiHKCI CYCGRG 3 cut(s) 393, 556, 820
BsiSI CCGG 4 cut(s) 7, 738, 742, 1193
BslFI GGGAC 1 cut(s) 1222
BslI CCNNNNNNNGG 5 cut(s) 224, 741, 780, 925, 1307
BsmAI GTCTC 2 cut(s) 579, 1399
BsmFI GGGAC 1 cut(s) 1222
BsnI GGCC 1 cut(s) 741
BsoBI CYCGRG 3 cut(s) 393, 556, 820
Bsp119I TTCGAA 1 cut(s) 759
Bsp143I GATC 8 cut(s) 24, 29, 69, 382, 503, 984, 1156, 1302
Bsp1720I GCTNAGC 1 cut(s) 1002
BspANI GGCC 1 cut(s) 741
BspLI GGNNCC 2 cut(s) 207, 1062
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 3 cut(s) 19, 511, 979
BspQI GCTCTTC 1 cut(s) 757
BspT104I TTCGAA 1 cut(s) 759
BsrFI RCCGGY 2 cut(s) 737, 1192
BsrI ACTGG 2 cut(s) 569, 954
BssAI RCCGGY 2 cut(s) 737, 1192
BssECI CCNNGG 2 cut(s) 996, 1386
BssMI GATC 8 cut(s) 24, 29, 69, 382, 503, 984, 1156, 1302
BssT1I CCWWGG 2 cut(s) 996, 1386
Bst2UI CCWGG 1 cut(s) 1130
Bst4CI ACNGT 6 cut(s) 355, 513, 652, 911, 928, 1286
Bst6I CTCTTC 1 cut(s) 757
BstBI TTCGAA 1 cut(s) 759
BstC8I GCNNGC 3 cut(s) 59, 104, 1194
BstDEI CTNAG 4 cut(s) 113, 499, 1002, 1079
BstEII GGTNACC 1 cut(s) 1149
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 4 cut(s) 15, 1060, 1164, 1297
BstKTI GATC 8 cut(s) 27, 32, 72, 385, 506, 987, 1159, 1305
BstMAI GTCTC 2 cut(s) 579, 1399
BstMBI GATC 8 cut(s) 24, 29, 69, 382, 503, 984, 1156, 1302
BstMCI CGRYCG 2 cut(s) 72, 742
BstMWI GCNNNNNNNGC 1 cut(s) 747
BstNI CCWGG 1 cut(s) 1130
BstNSI RCATGY 2 cut(s) 140, 677
BstPI GGTNACC 1 cut(s) 1149
BstSCI CCNGG 1 cut(s) 1128
BstSFI CTRYAG 1 cut(s) 648
BstV1I GCAGC 2 cut(s) 757, 1183
BstX2I RGATCY 1 cut(s) 503
BstXI CCANNNNNNTGG 1 cut(s) 576
BstYI RGATCY 1 cut(s) 503
BstZI CGGCCG 1 cut(s) 739
BsuRI GGCC 1 cut(s) 741
BtsCI GGATG 4 cut(s) 15, 1060, 1164, 1297
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 4 cut(s) 131, 657, 947, 966
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 3 cut(s) 59, 104, 1194
CaiI CAGNNNCTG 1 cut(s) 489
Cfr10I RCCGGY 2 cut(s) 737, 1192
Cfr13I GGNCC 2 cut(s) 697, 1060
CsiI ACCWGGT 1 cut(s) 1128
Csp6I GTAC 1 cut(s) 1261
CspCI CAANNNNNGTGG 2 cut(s) 275, 310
CviAII CATG 7 cut(s) 54, 137, 149, 674, 1160, 1189, 1406
CviQI GTAC 1 cut(s) 1261
DdeI CTNAG 4 cut(s) 113, 499, 1002, 1079
DpnI GATC 8 cut(s) 26, 31, 71, 384, 505, 986, 1158, 1304
DpnII GATC 8 cut(s) 24, 29, 69, 382, 503, 984, 1156, 1302
DraI TTTAAA 1 cut(s) 1336
EaeI YGGCCR 1 cut(s) 739
EagI CGGCCG 1 cut(s) 739
Eam1104I CTCTTC 1 cut(s) 757
EarI CTCTTC 1 cut(s) 757
EclXI CGGCCG 1 cut(s) 739
Eco130I CCWWGG 2 cut(s) 996, 1386
Eco47I GGWCC 2 cut(s) 697, 1060
Eco52I CGGCCG 1 cut(s) 739
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 3 cut(s) 393, 556, 820
Eco91I GGTNACC 1 cut(s) 1149
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 1060
EcoO65I GGTNACC 1 cut(s) 1149
EcoRII CCWGG 1 cut(s) 1128
EcoT14I CCWWGG 2 cut(s) 996, 1386
EcoT22I ATGCAT 1 cut(s) 1299
ErhI CCWWGG 2 cut(s) 996, 1386
FaeI CATG 7 cut(s) 57, 140, 152, 677, 1163, 1192, 1409
FaqI GGGAC 1 cut(s) 1222
FatI CATG 7 cut(s) 53, 136, 148, 673, 1159, 1188, 1405
FauNDI CATATG 1 cut(s) 310
FblI GTMKAC 1 cut(s) 876
Fnu4HI GCNGC 2 cut(s) 771, 1197
FokI GGATG 4 cut(s) 22, 1067, 1151, 1284
Fsp4HI GCNGC 2 cut(s) 771, 1197
FspBI CTAG 3 cut(s) 44, 795, 1118
GluI GCNGC 2 cut(s) 771, 1197
GsaI CCCAGC 1 cut(s) 1076
HaeIII GGCC 1 cut(s) 741
HapII CCGG 4 cut(s) 7, 738, 742, 1193
Hin1II CATG 7 cut(s) 57, 140, 152, 677, 1163, 1192, 1409
HincII GTYRAC 3 cut(s) 877, 1043, 1279
HindII GTYRAC 3 cut(s) 877, 1043, 1279
HindIII AAGCTT 2 cut(s) 1004, 1230
HinfI GANTC 5 cut(s) 456, 622, 731, 1122, 1210
HpaI GTTAAC 1 cut(s) 1279
HpaII CCGG 4 cut(s) 7, 738, 742, 1193
HphI GGTGA 4 cut(s) 152, 445, 860, 1143
Hpy166II GTNNAC 6 cut(s) 284, 323, 877, 1020, 1043, 1279
Hpy188I TCNGA 4 cut(s) 29, 91, 1105, 1302
Hpy188III TCNNGA 1 cut(s) 728
Hpy8I GTNNAC 6 cut(s) 284, 323, 877, 1020, 1043, 1279
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 2 cut(s) 179, 398
HpyCH4III ACNGT 6 cut(s) 355, 513, 652, 911, 928, 1286
HpyCH4IV ACGT 1 cut(s) 1091
HpyCH4V TGCA 8 cut(s) 4, 136, 224, 430, 509, 1184, 1199, 1297
HpyF10VI GCNNNNNNNGC 1 cut(s) 747
HpyF3I CTNAG 4 cut(s) 113, 499, 1002, 1079
HpySE526I ACGT 1 cut(s) 1091
Hsp92II CATG 7 cut(s) 57, 140, 152, 677, 1163, 1192, 1409
KroI GCCGGC 1 cut(s) 1192
KroNI GCCGGC 1 cut(s) 1194
KspAI GTTAAC 1 cut(s) 1279
Kzo9I GATC 8 cut(s) 24, 29, 69, 382, 503, 984, 1156, 1302
LguI GCTCTTC 1 cut(s) 757
LmnI GCTCC 1 cut(s) 398
Lsp1109I GCAGC 2 cut(s) 757, 1183
LweI GCATC 5 cut(s) 319, 477, 495, 555, 1306
MabI ACCWGGT 1 cut(s) 1128
MaeI CTAG 3 cut(s) 44, 795, 1118
MaeII ACGT 1 cut(s) 1091
MaeIII GTNAC 7 cut(s) 433, 866, 922, 928, 960, 1082, 1149
MalI GATC 8 cut(s) 26, 31, 71, 384, 505, 986, 1158, 1304
MboI GATC 8 cut(s) 24, 29, 69, 382, 503, 984, 1156, 1302
MboII GAAGA 6 cut(s) 377, 380, 744, 907, 1259, 1337
MfeI CAATTG 1 cut(s) 1200
MflI RGATCY 1 cut(s) 503
MlyI GAGTC 1 cut(s) 1204
Mph1103I ATGCAT 1 cut(s) 1299
MroNI GCCGGC 1 cut(s) 1192
MroXI GAANNNNTTC 1 cut(s) 896
MseI TTAA 4 cut(s) 249, 1278, 1335, 1368
MslI CAYNNNNRTG 1 cut(s) 971
MspI CCGG 4 cut(s) 7, 738, 742, 1193
MspR9I CCNGG 1 cut(s) 1130
MunI CAATTG 1 cut(s) 1200
MvaI CCWGG 1 cut(s) 1130
MwoI GCNNNNNNNGC 1 cut(s) 747
NaeI GCCGGC 1 cut(s) 1194
NdeI CATATG 1 cut(s) 310
NdeII GATC 8 cut(s) 24, 29, 69, 382, 503, 984, 1156, 1302
NgoMIV GCCGGC 1 cut(s) 1192
NlaIII CATG 7 cut(s) 57, 140, 152, 677, 1163, 1192, 1409
NlaIV GGNNCC 2 cut(s) 207, 1062
NmuCI GTSAC 4 cut(s) 433, 866, 922, 1149
NsiI ATGCAT 1 cut(s) 1299
NspI RCATGY 2 cut(s) 140, 677
NspV TTCGAA 1 cut(s) 759
OliI CACNNNNGTG 1 cut(s) 971
PaeR7I CTCGAG 2 cut(s) 393, 820
PaqCI CACCTGC 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 757
PdiI GCCGGC 1 cut(s) 1194
PdmI GAANNNNTTC 1 cut(s) 896
PfeI GAWTC 4 cut(s) 456, 622, 731, 1122
PkrI GCNGC 2 cut(s) 772, 1198
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 1 cut(s) 1204
PpsI GAGTC 1 cut(s) 1204
PpuMI RGGWCCY 1 cut(s) 1060
PsiI TTATAA 1 cut(s) 1377
Psp1406I AACGTT 1 cut(s) 1091
Psp5II RGGWCCY 1 cut(s) 1060
Psp6I CCWGG 1 cut(s) 1128
PspEI GGTNACC 1 cut(s) 1149
PspFI CCCAGC 1 cut(s) 1072
PspGI CCWGG 1 cut(s) 1128
PspN4I GGNNCC 2 cut(s) 207, 1062
PspPI GGNCC 2 cut(s) 697, 1060
PspPPI RGGWCCY 1 cut(s) 1060
PspXI VCTCGAGB 2 cut(s) 393, 820
PstNI CAGNNNCTG 1 cut(s) 489
PsuI RGATCY 1 cut(s) 503
PvuI CGATCG 1 cut(s) 72
RsaI GTAC 1 cut(s) 1262
RsaNI GTAC 1 cut(s) 1261
RseI CAYNNNNRTG 1 cut(s) 971
SalI GTCGAC 1 cut(s) 875
SapI GCTCTTC 1 cut(s) 757
SaqAI TTAA 4 cut(s) 249, 1278, 1335, 1368
SatI GCNGC 2 cut(s) 771, 1197
Sau3AI GATC 8 cut(s) 24, 29, 69, 382, 503, 984, 1156, 1302
Sau96I GGNCC 2 cut(s) 697, 1060
SchI GAGTC 1 cut(s) 1204
ScrFI CCNGG 1 cut(s) 1130
SexAI ACCWGGT 1 cut(s) 1128
SfaNI GCATC 5 cut(s) 319, 477, 495, 555, 1306
SfcI CTRYAG 1 cut(s) 648
Sfr274I CTCGAG 2 cut(s) 393, 820
SfuI TTCGAA 1 cut(s) 759
SinI GGWCC 2 cut(s) 697, 1060
SlaI CTCGAG 2 cut(s) 393, 820
SmiMI CAYNNNNRTG 1 cut(s) 971
SmlI CTYRAG 2 cut(s) 393, 820
SmoI CTYRAG 2 cut(s) 393, 820
SspMI CTAG 3 cut(s) 44, 795, 1118
StyD4I CCNGG 1 cut(s) 1128
StyI CCWWGG 2 cut(s) 996, 1386
TaaI ACNGT 6 cut(s) 355, 513, 652, 911, 928, 1286
TaiI ACGT 1 cut(s) 1094
TatI WGTACW 1 cut(s) 1260
TfiI GAWTC 4 cut(s) 456, 622, 731, 1122
Tru1I TTAA 4 cut(s) 249, 1278, 1335, 1368
Tru9I TTAA 4 cut(s) 249, 1278, 1335, 1368
TscAI CASTG 4 cut(s) 138, 657, 954, 973
TseFI GTSAC 4 cut(s) 433, 866, 922, 1149
TseI GCWGC 2 cut(s) 770, 1196
Tsp45I GTSAC 4 cut(s) 433, 866, 922, 1149
TspDTI ATGAA 2 cut(s) 635, 1266
TspGWI ACGGA 2 cut(s) 710, 873
TspRI CASTG 4 cut(s) 138, 657, 954, 973
VpaK11BI GGWCC 2 cut(s) 697, 1060
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 3 cut(s) 440, 473, 723
XceI RCATGY 2 cut(s) 140, 677
XhoI CTCGAG 2 cut(s) 393, 820
XmiI GTMKAC 1 cut(s) 876
XmnI GAANNNNTTC 1 cut(s) 896
XspI CTAG 3 cut(s) 44, 795, 1118
Zsp2I ATGCAT 1 cut(s) 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.