FvH4_1g26830

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017589
Physical Location & Seq
Forward (+)
18667300 .. 18670158
2859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26830.t1

Sequence Viewer

Length: 1566 bp
ATGCGGAGGTTAGAAGGAACCATACTCGTATCGACTTGCCGCCACTTCTGTACGCTCTCACCGCCCAGTTTGAATCACATGCATGCAATCCCATTTCCTGATCCCAATCCCACACCCCGAAACACTGTGTCGTCCAACAAATTGATTGCCCGTTACGTCAGAAATGGCCAAACACAAATCGCCCACAACCTGTTCGATGAAATGCGTGTCAAAGACGTAGTATCCTGGAACACCATCTTATCGGGGTTGCACAACGCCAAAGACCCACACGGGATTCATCAGCTTCTCTTGCAAATGAGAAGAGATGGGTTTGGACCAAATGAGTACACCATCTCCATAGTATTGAGAGCCTTTTTGGGGACTGTACTCAATGTGTTGGTCTCGCAGATTCATGCCTTTGCAATAGTCTTGGCGCTCAACTCGTCTGTGTTTGTTGGGTCTGCACTTATGAAAGGGTATGCAAATATAGGGGATCGAGTTGCTATGGCTTGTGTGTTTGATGAGATTTCGGCCAAGGATGTGTCGTCTTGGAATGCATTGATTTCGAGTTATGTGGAATTGGGGTGCTTGGATGAGGCTCAAAGAGTTTTTGATGGGATGCTGGAGAGGAATGTAGTTTCTTGGACTAGTTTAGTGAATGGATATATCAGAAATAGGAGGGTTGACAAAGCTCGCTCTGTTTTCGATAAAATGAGTGGGAAAAATGTGGTCTCATGGACTGTTATGATCAGTGGTTATGTGAAGAACCAGAGATTTTTAGATGCTTTGGAACTTGTCCTCTTGATGTTGAAATCAGGGACTCTGCCCAATCAGTTCACATTTTCAAGTGTGCTGGATGCAAGTGCTGGTTGTTCTTCACTTATTTTCGGTCAGCAAGTTCACTCGAGCATCTTAAAGACTGGCATACCGGAGGATGTGACCTTGTCAACGTCTCTTGTTGATATGTATGCTAAGTGTGGTGATATTGATGCAGCGTATTGTATTTTTGGATCCATGCAAAAGAAAAACTTGATATCCTGGAACTCAATAATAGGAGGTTATGCAAGGCATGGAATTGCTACAAGAGCATTGGAGGAGTTTGAGAGAATGACCGACTGTGGTGTTAGGCCTGATGCGATTACATTCACAAACGTGCTATCAGCTTGTGCACATGGTGGGATGATTGAAGATGGAAAAAGCCTCTTTAACTCCATGAAGGCAAAGTTCGAAGTGGAACCAGAGGTGGAGCATTATGCTTGCATGGTAGACCTCTATGGGAAAGCAGGTGAGCTGGAGGAAGCTGAGAAGTTGATACAAGGGATGCCATATCAGCCGGATGTTGTTGTTTGGTGTGCGTTACTTGGTGCTTGTGGTTTGCATTCAAGTTTGGAACTTGGTAAGTTTGCTGCAAAGGAACTTGATAAACTGGAAAGTGACCATCCTGCAATATTTTCAACGCTTTCAAGAATTCATGGGGAAAGAGGAGTTTGGAATAGTGTGCTCAAGTTAAGGAAGACAATGAAAGAGAAAGGTGTTCAAAAGCAGAATGCAGGTAGCTGGGTTGAGTCTGCACAAGTAAGTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

522

Amino Acids

57.52

Weight (kDa)

7.59

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 71 - 118 2.8e-10 PPR repeat family
PPR PF01535 176 - 205 8.7e-07 PPR repeat
PPR_1 PF12854 201 - 232 2.4e-06 PPR repeat
PPR_2 PF13041 203 - 236 1.7e-06 PPR repeat family
PPR PF01535 206 - 236 3.1e-07 PPR repeat
PPR_2 PF13041 234 - 280 7.1e-11 PPR repeat family
PPR PF01535 237 - 266 9e-06 PPR repeat
PPR_2 PF13041 336 - 384 3.6e-09 PPR repeat family
E_motif PF20431 453 - 515 2.4e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017589)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26830 FvH4_1g26830
malus_domestica MD17G1278700.v1.1
prunus_persica Prupe.3G007300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487071
rosa_laevigata RLG00000023035
rosa_multiflora Rmu_sc0005856.1_g000034
rosa_roxburghii Rroxscaffold_6G00395200
rosa_samantha Rh3BG315000 Rh3CG313400 Rh3DG310000
rosa_wichuraiana Rw3G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1253
Acc36I ACCTGC 2 cut(s) 1253, 1520
AccI GTMKAC 1 cut(s) 1245
AciI CCGC 3 cut(s) 4, 40, 62
AclWI GGATC 4 cut(s) 95, 480, 984, 997
AcoI YGGCCR 2 cut(s) 166, 510
AcsI RAATTY 1 cut(s) 1446
AdeI CACNNNGTG 1 cut(s) 1154
AfaI GTAC 3 cut(s) 52, 326, 366
AfiI CCNNNNNNNGG 1 cut(s) 357
AgsI TTSAA 8 cut(s) 73, 790, 825, 1166, 1362, 1434, 1443, 1517
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 2 cut(s) 224, 1016
AleI CACNNNNGTG 1 cut(s) 1130
AluBI AGCT 6 cut(s) 283, 671, 1142, 1270, 1280, 1536
AluI AGCT 6 cut(s) 283, 671, 1142, 1270, 1280, 1536
Alw21I GWGCWC 2 cut(s) 1150, 1482
Alw26I GTCTC 3 cut(s) 385, 715, 936
Alw44I GTGCAC 1 cut(s) 1146
AlwI GGATC 4 cut(s) 95, 480, 984, 997
Ama87I CYCGRG 1 cut(s) 883
AoxI GGCC 3 cut(s) 166, 510, 1106
ApaLI GTGCAC 1 cut(s) 1146
ApeKI GCWGC 2 cut(s) 971, 1385
ApoI RAATTY 1 cut(s) 1446
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 3 cut(s) 51, 971, 1277
AsuII TTCGAA 1 cut(s) 1206
AvaI CYCGRG 1 cut(s) 883
AvaII GGWCC 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 1150
BalI TGGCCA 1 cut(s) 168
BamHI GGATCC 1 cut(s) 989
BarI GAAGNNNNNNTAC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 1499
Bbv12I GWGCWC 2 cut(s) 1150, 1482
BbvI GCAGC 2 cut(s) 983, 1372
BccI CCATC 6 cut(s) 242, 299, 338, 587, 1163, 1425
BcgI CGANNNNNNTGC 2 cut(s) 525, 559
BciT130I CCWGG 2 cut(s) 226, 1018
BciVI GTATCC 1 cut(s) 232
BclI TGATCA 1 cut(s) 726
BcoDI GTCTC 3 cut(s) 385, 715, 936
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 1 cut(s) 627
BfoI RGCGCY 1 cut(s) 416
BfuAI ACCTGC 2 cut(s) 1253, 1520
BfuI GTATCC 1 cut(s) 232
BisI GCNGC 3 cut(s) 40, 972, 1386
BlsI GCNGC 3 cut(s) 41, 973, 1387
Bme1390I CCNGG 2 cut(s) 226, 1018
Bme18I GGWCC 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 883
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 3 cut(s) 19, 991, 1215
BmrFI CCNGG 2 cut(s) 226, 1018
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 7 cut(s) 588, 751, 826, 897, 958, 1102, 1290
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 1499
BpmI CTGGAG 2 cut(s) 623, 1292
Bpu14I TTCGAA 1 cut(s) 1206
BpuEI CTTGAG 1 cut(s) 1466
BsaBI GATNNNNATC 1 cut(s) 105
BsaI GGTCTC 2 cut(s) 385, 715
BsaJI CCNNGG 1 cut(s) 513
BsaWI WCCGGW 1 cut(s) 907
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 3 cut(s) 66, 904, 1410
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 2 cut(s) 226, 1018
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 9 cut(s) 523, 577, 603, 841, 919, 1164, 1305, 1321, 1417
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMII CTCAG 1 cut(s) 1272
BseNI ACTGG 3 cut(s) 66, 904, 1410
BseRI GAGGAG 2 cut(s) 1088, 1476
BseSI GKGCMC 1 cut(s) 1150
BseXI GCAGC 2 cut(s) 983, 1372
BseYI CCCAGC 1 cut(s) 1536
BsgI GTGCAG 2 cut(s) 426, 1533
BshFI GGCC 3 cut(s) 168, 512, 1108
BsiHKAI GWGCWC 2 cut(s) 1150, 1482
BsiHKCI CYCGRG 1 cut(s) 883
BsiSI CCGG 2 cut(s) 908, 1313
BslFI GGGAC 2 cut(s) 373, 811
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 3 cut(s) 385, 715, 936
BsmBI CGTCTC 1 cut(s) 936
BsmFI GGGAC 2 cut(s) 373, 811
BsmI GAATGC 3 cut(s) 538, 1357, 1531
BsnI GGCC 3 cut(s) 168, 512, 1108
Bso31I GGTCTC 2 cut(s) 385, 715
BsoBI CYCGRG 1 cut(s) 883
Bsp119I TTCGAA 1 cut(s) 1206
Bsp1286I GDGCHC 2 cut(s) 1150, 1482
Bsp143I GATC 4 cut(s) 100, 472, 726, 989
BspACI CCGC 3 cut(s) 4, 40, 62
BspANI GGCC 3 cut(s) 168, 512, 1108
BspCNI CTCAG 1 cut(s) 1273
BspLI GGNNCC 3 cut(s) 19, 991, 1215
BspMI ACCTGC 2 cut(s) 1253, 1520
BspPI GGATC 4 cut(s) 95, 480, 984, 997
BspT104I TTCGAA 1 cut(s) 1206
BspTNI GGTCTC 2 cut(s) 385, 715
BsrI ACTGG 3 cut(s) 66, 904, 1410
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 4 cut(s) 100, 472, 726, 989
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 226, 1018
Bst4CI ACNGT 4 cut(s) 127, 364, 721, 1097
Bst6I CTCTTC 1 cut(s) 295
BstBI TTCGAA 1 cut(s) 1206
BstC8I GCNNGC 3 cut(s) 84, 673, 1237
BstDEI CTNAG 2 cut(s) 951, 1281
BstF5I GGATG 9 cut(s) 523, 577, 603, 841, 919, 1164, 1305, 1321, 1417
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 4 cut(s) 103, 475, 729, 992
BstMAI GTCTC 3 cut(s) 385, 715, 936
BstMBI GATC 4 cut(s) 100, 472, 726, 989
BstMWI GCNNNNNNNGC 4 cut(s) 61, 289, 1064, 1309
BstNI CCWGG 2 cut(s) 226, 1018
BstNSI RCATGY 2 cut(s) 82, 86
BstSCI CCNGG 2 cut(s) 224, 1016
BstSLI GKGCMC 1 cut(s) 1150
BstV1I GCAGC 2 cut(s) 983, 1372
BstV2I GAAGAC 1 cut(s) 1499
BstX2I RGATCY 1 cut(s) 989
BstYI RGATCY 1 cut(s) 989
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 3 cut(s) 168, 512, 1108
BtsCI GGATG 9 cut(s) 523, 577, 603, 841, 919, 1164, 1305, 1321, 1417
BtsIMutI CAGTG 2 cut(s) 123, 736
BveI ACCTGC 2 cut(s) 1253, 1520
Cac8I GCNNGC 3 cut(s) 84, 673, 1237
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 3 cut(s) 51, 325, 365
CviQI GTAC 3 cut(s) 51, 325, 365
DdeI CTNAG 2 cut(s) 951, 1281
DpnI GATC 4 cut(s) 102, 474, 728, 991
DpnII GATC 4 cut(s) 100, 472, 726, 989
DraIII CACNNNGTG 1 cut(s) 1154
EaeI YGGCCR 2 cut(s) 166, 510
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 1108
Eco31I GGTCTC 2 cut(s) 385, 715
Eco32I GATATC 1 cut(s) 1014
Eco47I GGWCC 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 883
EcoRI GAATTC 1 cut(s) 1446
EcoRII CCWGG 2 cut(s) 224, 1016
EcoRV GATATC 1 cut(s) 1014
EcoT14I CCWWGG 1 cut(s) 513
EcoT22I ATGCAT 2 cut(s) 84, 538
ErhI CCWWGG 1 cut(s) 513
Esp3I CGTCTC 1 cut(s) 936
FalI AAGNNNNNCTT 2 cut(s) 992, 1024
FaqI GGGAC 2 cut(s) 373, 811
FbaI TGATCA 1 cut(s) 726
FblI GTMKAC 1 cut(s) 1245
Fnu4HI GCNGC 3 cut(s) 40, 972, 1386
FokI GGATG 9 cut(s) 530, 584, 610, 848, 926, 1171, 1312, 1328, 1404
Fsp4HI GCNGC 3 cut(s) 40, 972, 1386
FspBI CTAG 1 cut(s) 627
GlaI GCGC 1 cut(s) 414
GluI GCNGC 3 cut(s) 40, 972, 1386
GsaI CCCAGC 1 cut(s) 1540
GsuI CTGGAG 2 cut(s) 623, 1292
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 3 cut(s) 168, 512, 1108
HapII CCGG 2 cut(s) 908, 1313
HhaI GCGC 1 cut(s) 415
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HincII GTYRAC 2 cut(s) 664, 927
HindII GTYRAC 2 cut(s) 664, 927
HinfI GANTC 5 cut(s) 73, 274, 388, 799, 1544
HpaII CCGG 2 cut(s) 908, 1313
HphI GGTGA 3 cut(s) 51, 971, 1277
Hpy166II GTNNAC 7 cut(s) 327, 664, 816, 880, 927, 1148, 1246
Hpy188I TCNGA 2 cut(s) 161, 650
Hpy188III TCNNGA 3 cut(s) 98, 781, 1443
Hpy8I GTNNAC 7 cut(s) 327, 664, 816, 880, 927, 1148, 1246
HpyAV CCTTC 2 cut(s) 8, 1189
HpyCH4III ACNGT 4 cut(s) 127, 364, 721, 1097
HpyCH4IV ACGT 4 cut(s) 156, 216, 929, 1131
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 289, 1064, 1309
HpyF3I CTNAG 2 cut(s) 951, 1281
HpySE526I ACGT 4 cut(s) 156, 216, 929, 1131
HspAI GCGC 1 cut(s) 413
Ksp22I TGATCA 1 cut(s) 726
Kzo9I GATC 4 cut(s) 100, 472, 726, 989
LmnI GCTCC 1 cut(s) 1225
Lsp1109I GCAGC 2 cut(s) 983, 1372
LweI GCATC 7 cut(s) 588, 751, 826, 897, 958, 1102, 1290
MaeI CTAG 1 cut(s) 627
MaeII ACGT 4 cut(s) 156, 216, 929, 1131
MaeIII GTNAC 4 cut(s) 152, 916, 1335, 1412
MalI GATC 4 cut(s) 102, 474, 728, 991
MboI GATC 4 cut(s) 100, 472, 726, 989
MboII GAAGA 5 cut(s) 312, 754, 846, 1178, 1504
MflI RGATCY 1 cut(s) 989
MhlI GDGCHC 2 cut(s) 1150, 1482
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 4 cut(s) 140, 557, 1053, 1446
MluNI TGGCCA 1 cut(s) 168
MlyI GAGTC 2 cut(s) 793, 1553
MmeI TCCRAC 1 cut(s) 159
Mox20I TGGCCA 1 cut(s) 168
Mph1103I ATGCAT 2 cut(s) 84, 538
MscI TGGCCA 1 cut(s) 168
MseI TTAA 3 cut(s) 893, 1185, 1487
MslI CAYNNNNRTG 2 cut(s) 81, 1130
Msp20I TGGCCA 1 cut(s) 168
MspI CCGG 2 cut(s) 908, 1313
MspR9I CCNGG 2 cut(s) 226, 1018
Mva1269I GAATGC 3 cut(s) 538, 1357, 1531
MvaI CCWGG 2 cut(s) 226, 1018
MwoI GCNNNNNNNGC 4 cut(s) 61, 289, 1064, 1309
NdeII GATC 4 cut(s) 100, 472, 726, 989
NlaIV GGNNCC 3 cut(s) 19, 991, 1215
NmuCI GTSAC 2 cut(s) 916, 1412
NsiI ATGCAT 2 cut(s) 84, 538
NspI RCATGY 2 cut(s) 82, 86
NspV TTCGAA 1 cut(s) 1206
OliI CACNNNNGTG 1 cut(s) 1130
PaeI GCATGC 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 883
PaqCI CACCTGC 1 cut(s) 1253
PceI AGGCCT 1 cut(s) 1108
PctI GAATGC 3 cut(s) 538, 1357, 1531
PfeI GAWTC 3 cut(s) 73, 274, 388
PflFI GACNNNGTC 1 cut(s) 922
PfoI TCCNGGA 2 cut(s) 224, 1016
PkrI GCNGC 3 cut(s) 41, 973, 1387
PleI GAGTC 2 cut(s) 793, 1552
PpsI GAGTC 2 cut(s) 793, 1552
Psp6I CCWGG 2 cut(s) 224, 1016
PspFI CCCAGC 1 cut(s) 1536
PspGI CCWGG 2 cut(s) 224, 1016
PspN4I GGNNCC 3 cut(s) 19, 991, 1215
PspPI GGNCC 1 cut(s) 314
PspXI VCTCGAGB 1 cut(s) 883
PsuI RGATCY 1 cut(s) 989
PsyI GACNNNGTC 1 cut(s) 922
RsaI GTAC 3 cut(s) 52, 326, 366
RsaNI GTAC 3 cut(s) 51, 325, 365
RseI CAYNNNNRTG 2 cut(s) 81, 1130
SaqAI TTAA 3 cut(s) 893, 1185, 1487
SatI GCNGC 3 cut(s) 40, 972, 1386
Sau3AI GATC 4 cut(s) 100, 472, 726, 989
Sau96I GGNCC 1 cut(s) 314
SchI GAGTC 2 cut(s) 793, 1553
ScrFI CCNGG 2 cut(s) 226, 1018
SduI GDGCHC 2 cut(s) 1150, 1482
SfaNI GCATC 7 cut(s) 588, 751, 826, 897, 958, 1102, 1290
Sfr274I CTCGAG 1 cut(s) 883
SfuI TTCGAA 1 cut(s) 1206
SinI GGWCC 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 883
SmiMI CAYNNNNRTG 2 cut(s) 81, 1130
SmlI CTYRAG 2 cut(s) 883, 1481
SmoI CTYRAG 2 cut(s) 883, 1481
SpeI ACTAGT 1 cut(s) 626
SphI GCATGC 1 cut(s) 86
Sse9I AATT 4 cut(s) 140, 557, 1053, 1446
SseBI AGGCCT 1 cut(s) 1108
SsiI CCGC 3 cut(s) 4, 40, 62
SspI AATATT 1 cut(s) 1428
SspMI CTAG 1 cut(s) 627
StuI AGGCCT 1 cut(s) 1108
StyD4I CCNGG 2 cut(s) 224, 1016
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 4 cut(s) 127, 364, 721, 1097
TaiI ACGT 4 cut(s) 159, 219, 932, 1134
TaqI TCGA 7 cut(s) 32, 195, 475, 545, 684, 884, 1206
TaqII GACCGA 2 cut(s) 857, 1106
TasI AATT 4 cut(s) 140, 557, 1053, 1446
TatI WGTACW 2 cut(s) 324, 364
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 3 cut(s) 73, 274, 388
Tru1I TTAA 3 cut(s) 893, 1185, 1487
Tru9I TTAA 3 cut(s) 893, 1185, 1487
TscAI CASTG 2 cut(s) 130, 736
TseFI GTSAC 2 cut(s) 916, 1412
TseI GCWGC 2 cut(s) 971, 1385
Tsp45I GTSAC 2 cut(s) 916, 1412
TspDTI ATGAA 7 cut(s) 213, 266, 380, 464, 1208, 1439, 1514
TspRI CASTG 2 cut(s) 130, 736
Tth111I GACNNNGTC 1 cut(s) 922
VneI GTGCAC 1 cut(s) 1146
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 1 cut(s) 1446
XceI RCATGY 2 cut(s) 82, 86
XhoI CTCGAG 1 cut(s) 883
XmiI GTMKAC 1 cut(s) 1245
XspI CTAG 1 cut(s) 627
Zsp2I ATGCAT 2 cut(s) 84, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.