Prupe.3G007300_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017589
Physical Location & Seq
Forward (+)
441168 .. 442640
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G007300.1

Sequence Viewer

Length: 1383 bp
ATGCTCGACACTCGAGGCTCAGACCATGCGCGTCTGTATTTTGATGGAAATCCTCCATCCCGGAACATTTTGTCATGCAACAGAATGCTTGCAGCGCATGTGAGAAATGATCAAACGCCAATTGCACAGGACCTGTTTGATCAAATGCTCGTGAAAGACGTCGTTTCGTGGAACACCATGTTGACGGGTTTGCAGAAAGCCAAAAACCCACACGGAGTTAATCGATGCTTCTTGCAAATGAGAAGAGATGGCTTTAGACCAAGTGAGTATACCATCTCGACGGTACTCAATGCCTTTCTGGGCACAGCGTTTAATGTTTCGGTATCGCAGATTCATGCCCTTGTAGTCCGTTTGGCGCTCAGCTCAAGCGATGTCTCGTCTTCGAATGCATTGGTTTCGAGTTACATGGAACTGGGGTGCACGCTCGAGGCTCAAAGAGTTTTTGATGTCATGCTGGAGAGGAATATAGTTTCTTGGACTAGTTTGGTAAGCGGGTATATCAACAATAAGAGGATCAACAAAGCTCGCTCTGTTTTCGACAAAATGAGAGAAAAGAATGTGGTTTCATGGACTGTTATGATCAGTGGGTATGTGAAAAATCAGAAATTTATGGATGCTCTGGATCTTTTCCTCTTGATGTTGAAATCGGGGGCTCTGCCGAATCACTTTACATTTTCAAGTGTGTTAGATGCATGTGCTGGTTGTTCTTCACTTATACTGGGGCAGCAAGTTCACTCGAGCATCTTAAAGCTTGGTAGGCCGGATGATGTCATCATGTCAACTTCGCTTGTTGATATGTACGCAAAATGCGGGGACATTGAAGCGGCATTTTGTGTTTTTGGATCCATGCCGAGAAAAAATTTGGTGACATGGAATTCAATCATAGGAGGTTCTGCGAGGCATGGACTCGCAACAAGAGCATTGGACAAGTTTGAGAGAATGATCAAGTGTGGTGTAAGGCCAGATGAAGTTACATTTGTAAACGTGTTATCGGCTTGTGGGCATGGTGGGATGGTTGAGAAGGGTGAAAATCTATTTAACTCCATGAAGGCAAAGTTTGGAATCGAACCAAACGTCGAGCATTACGCATGCATGGTCGACCTCTATGGGAAAGCAGGCAACCTAGAGGAAGCGGAGAAATTGATACATGGGATGCCATTTCAGCCGGATGTTGTGATTTGGGTTGCATTCCTTGGTGCATGCGTTTTGCATTCAAGTCTTCAACTAGGTGAGTTTGCTGCTAAAGAAATTGAGAAACTGAGAAATGACCATCCCGCAATATATTCAACGCTTTCAAAGATCCATGGCGAAAGAGGGGCATGGGACAGTGTACTAGAGTTTAGGAAAATTATGAAAGAGAAACACATTCAAAGGCAGATTGCA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

461

Amino Acids

51.3

Weight (kDa)

8.67

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017589)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26830 FvH4_1g26830
malus_domestica MD17G1278700.v1.1
prunus_persica Prupe.3G007300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487071
rosa_laevigata RLG00000023035
rosa_multiflora Rmu_sc0005856.1_g000034
rosa_roxburghii Rroxscaffold_6G00395200
rosa_samantha Rh3BG315000 Rh3CG313400 Rh3DG310000
rosa_wichuraiana Rw3G024740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
AccI GTMKAC 2 cut(s) 269, 1098
AccII CGCG 1 cut(s) 31
AciI CCGC 5 cut(s) 492, 810, 824, 1133, 1275
AclWI GGATC 5 cut(s) 521, 630, 837, 850, 1294
AcsI RAATTY 3 cut(s) 605, 859, 874
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 3 cut(s) 285, 800, 1332
AflIII ACRYGT 1 cut(s) 984
AgsI TTSAA 9 cut(s) 643, 678, 821, 879, 1215, 1223, 1287, 1296, 1370
AhlI ACTAGT 1 cut(s) 479
AluBI AGCT 3 cut(s) 363, 524, 751
AluI AGCT 3 cut(s) 363, 524, 751
Alw21I GWGCWC 1 cut(s) 422
Alw26I GTCTC 1 cut(s) 379
Alw44I GTGCAC 1 cut(s) 418
AlwI GGATC 5 cut(s) 521, 630, 837, 850, 1294
AlwNI CAGNNNCTG 1 cut(s) 133
Ama87I CYCGRG 3 cut(s) 12, 425, 736
AoxI GGCC 2 cut(s) 758, 959
ApaLI GTGCAC 1 cut(s) 418
ApeKI GCWGC 3 cut(s) 92, 724, 1238
ApoI RAATTY 3 cut(s) 605, 859, 874
ArsI GACNNNNNNTTYG 2 cut(s) 1059, 1091
AspLEI GCGC 3 cut(s) 31, 97, 358
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 3 cut(s) 877, 1037, 1241
AsuII TTCGAA 1 cut(s) 383
AvaI CYCGRG 3 cut(s) 12, 425, 736
AvaII GGWCC 1 cut(s) 130
BaeGI GKGCMC 2 cut(s) 305, 422
BamHI GGATCC 1 cut(s) 842
BanII GRGCYC 1 cut(s) 655
BauI CACGAG 1 cut(s) 149
BbsI GAAGAC 2 cut(s) 372, 1211
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 3 cut(s) 104, 736, 1225
BccI CCATC 6 cut(s) 38, 64, 242, 281, 1006, 1278
BcgI CGANNNNNNTGC 2 cut(s) 378, 412
BclI TGATCA 4 cut(s) 109, 139, 579, 942
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 379
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 4 cut(s) 480, 1124, 1226, 1334
BfoI RGCGCY 1 cut(s) 359
BisI GCNGC 4 cut(s) 93, 725, 825, 1239
BlpI GCTNAGC 1 cut(s) 359
BlsI GCNGC 4 cut(s) 94, 726, 826, 1240
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 130
BmeT110I CYCGRG 3 cut(s) 12, 425, 736
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 844
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 2 cut(s) 422, 728
BmsI GCATC 5 cut(s) 215, 604, 679, 750, 1143
BmuI ACTGGG 2 cut(s) 422, 728
BpiI GAAGAC 2 cut(s) 372, 1211
BpmI CTGGAG 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 359
Bpu14I TTCGAA 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 349
BpuMI CCSGG 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 1192, 1303
Bse1I ACTGG 2 cut(s) 417, 723
Bse8I GATNNNNATC 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 1192, 1303
BseGI GGATG 7 cut(s) 56, 619, 769, 1017, 1158, 1174, 1270
BseJI GATNNNNATC 1 cut(s) 48
BseMII CTCAG 3 cut(s) 33, 373, 1250
BseNI ACTGG 2 cut(s) 417, 723
BseSI GKGCMC 2 cut(s) 305, 422
BseXI GCAGC 3 cut(s) 104, 736, 1225
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 2 cut(s) 760, 961
BshVI ATCGAT 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 422
BsiHKCI CYCGRG 3 cut(s) 12, 425, 736
BsiSI CCGG 3 cut(s) 61, 761, 1166
BslFI GGGAC 2 cut(s) 827, 1337
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 827, 1337
BsmI GAATGC 4 cut(s) 90, 391, 1187, 1210
BsnI GGCC 2 cut(s) 760, 961
BsoBI CYCGRG 3 cut(s) 12, 425, 736
Bsp119I TTCGAA 1 cut(s) 383
Bsp1286I GDGCHC 3 cut(s) 305, 422, 655
Bsp143I GATC 8 cut(s) 109, 139, 513, 579, 622, 842, 942, 1299
Bsp1720I GCTNAGC 1 cut(s) 359
Bsp19I CCATGG 1 cut(s) 1303
BspACI CCGC 5 cut(s) 492, 810, 824, 1133, 1275
BspANI GGCC 2 cut(s) 760, 961
BspCNI CTCAG 3 cut(s) 32, 372, 1251
BspDI ATCGAT 1 cut(s) 223
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 844
BspPI GGATC 5 cut(s) 521, 630, 837, 850, 1294
BspT104I TTCGAA 1 cut(s) 383
BsrI ACTGG 2 cut(s) 417, 723
BssECI CCNNGG 2 cut(s) 1192, 1303
BssMI GATC 8 cut(s) 109, 139, 513, 579, 622, 842, 942, 1299
BssNAI GTATAC 1 cut(s) 270
BssNI GRCGYC 1 cut(s) 159
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 2 cut(s) 1192, 1303
Bst1107I GTATAC 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 149
Bst4CI ACNGT 3 cut(s) 283, 574, 1328
Bst6I CTCTTC 1 cut(s) 238
BstACI GRCGYC 1 cut(s) 159
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 6 cut(s) 90, 422, 526, 1090, 1117, 1201
BstDEI CTNAG 3 cut(s) 19, 359, 1259
BstDSI CCRYGG 1 cut(s) 1303
BstF5I GGATG 7 cut(s) 56, 619, 769, 1017, 1158, 1174, 1270
BstFNI CGCG 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 3 cut(s) 31, 97, 358
BstKTI GATC 8 cut(s) 112, 142, 516, 582, 625, 845, 945, 1302
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 8 cut(s) 109, 139, 513, 579, 622, 842, 942, 1299
BstMWI GCNNNNNNNGC 4 cut(s) 94, 757, 917, 1162
BstNSI RCATGY 4 cut(s) 101, 696, 1092, 1203
BstSCI CCNGG 1 cut(s) 59
BstSLI GKGCMC 2 cut(s) 305, 422
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 104, 736, 1225
BstV2I GAAGAC 2 cut(s) 372, 1211
BstX2I RGATCY 3 cut(s) 622, 842, 1299
BstYI RGATCY 3 cut(s) 622, 842, 1299
BstZ17I GTATAC 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 223
BsuRI GGCC 2 cut(s) 760, 961
BsuTUI ATCGAT 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 1303
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 7 cut(s) 56, 619, 769, 1017, 1158, 1174, 1270
BtsIMutI CAGTG 2 cut(s) 589, 1333
Cac8I GCNNGC 6 cut(s) 90, 422, 526, 1090, 1117, 1201
CaiI CAGNNNCTG 1 cut(s) 133
CfoI GCGC 3 cut(s) 31, 97, 358
Cfr13I GGNCC 1 cut(s) 130
ClaI ATCGAT 1 cut(s) 223
CseI GACGC 1 cut(s) 20
Csp6I GTAC 3 cut(s) 284, 799, 1331
CviQI GTAC 3 cut(s) 284, 799, 1331
DdeI CTNAG 3 cut(s) 19, 359, 1259
DpnI GATC 8 cut(s) 111, 141, 515, 581, 624, 844, 944, 1301
DpnII GATC 8 cut(s) 109, 139, 513, 579, 622, 842, 942, 1299
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco130I CCWWGG 2 cut(s) 1192, 1303
Eco24I GRGCYC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 130
Eco88I CYCGRG 3 cut(s) 12, 425, 736
EcoO109I RGGNCCY 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 874
EcoT14I CCWWGG 2 cut(s) 1192, 1303
EcoT22I ATGCAT 3 cut(s) 391, 694, 1094
EcoT38I GRGCYC 1 cut(s) 655
ErhI CCWWGG 2 cut(s) 1192, 1303
FaqI GGGAC 2 cut(s) 827, 1337
FauI CCCGC 3 cut(s) 485, 803, 1282
FbaI TGATCA 4 cut(s) 109, 139, 579, 942
FblI GTMKAC 2 cut(s) 269, 1098
Fnu4HI GCNGC 4 cut(s) 93, 725, 825, 1239
FokI GGATG 7 cut(s) 43, 626, 776, 1024, 1165, 1181, 1257
FriOI GRGCYC 1 cut(s) 655
Fsp4HI GCNGC 4 cut(s) 93, 725, 825, 1239
FspBI CTAG 4 cut(s) 480, 1124, 1226, 1334
GlaI GCGC 3 cut(s) 30, 96, 357
GluI GCNGC 4 cut(s) 93, 725, 825, 1239
GsuI CTGGAG 1 cut(s) 476
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 2 cut(s) 760, 961
HapII CCGG 3 cut(s) 61, 761, 1166
HgaI GACGC 1 cut(s) 20
HhaI GCGC 3 cut(s) 31, 97, 358
Hin1I GRCGYC 1 cut(s) 159
Hin6I GCGC 3 cut(s) 29, 95, 356
HinP1I GCGC 3 cut(s) 29, 95, 356
HincII GTYRAC 3 cut(s) 183, 780, 1099
HindII GTYRAC 3 cut(s) 183, 780, 1099
HindIII AAGCTT 1 cut(s) 749
HinfI GANTC 4 cut(s) 331, 661, 906, 1062
HpaII CCGG 3 cut(s) 61, 761, 1166
HphI GGTGA 3 cut(s) 877, 1037, 1241
Hpy166II GTNNAC 8 cut(s) 183, 270, 420, 733, 780, 982, 1099, 1331
Hpy188I TCNGA 2 cut(s) 22, 603
Hpy188III TCNNGA 4 cut(s) 151, 277, 620, 634
Hpy8I GTNNAC 8 cut(s) 183, 270, 420, 733, 780, 982, 1099, 1331
Hpy99I CGWCG 3 cut(s) 164, 283, 1079
HpyAV CCTTC 2 cut(s) 1015, 1042
HpyCH4III ACNGT 3 cut(s) 283, 574, 1328
HpyCH4IV ACGT 3 cut(s) 159, 984, 1074
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 757, 917, 1162
HpyF3I CTNAG 3 cut(s) 19, 359, 1259
HpySE526I ACGT 3 cut(s) 159, 984, 1074
Hsp92I GRCGYC 1 cut(s) 159
HspAI GCGC 3 cut(s) 29, 95, 356
Ksp22I TGATCA 4 cut(s) 109, 139, 579, 942
Kzo9I GATC 8 cut(s) 109, 139, 513, 579, 622, 842, 942, 1299
Lsp1109I GCAGC 3 cut(s) 104, 736, 1225
LweI GCATC 5 cut(s) 215, 604, 679, 750, 1143
MaeI CTAG 4 cut(s) 480, 1124, 1226, 1334
MaeII ACGT 3 cut(s) 159, 984, 1074
MaeIII GTNAC 3 cut(s) 401, 865, 970
MalI GATC 8 cut(s) 111, 141, 515, 581, 624, 844, 944, 1301
MboI GATC 8 cut(s) 109, 139, 513, 579, 622, 842, 942, 1299
MboII GAAGA 4 cut(s) 255, 372, 699, 1211
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 3 cut(s) 622, 842, 1299
MhlI GDGCHC 3 cut(s) 305, 422, 655
MluCI AATT 7 cut(s) 120, 605, 859, 874, 1139, 1248, 1347
MlyI GAGTC 1 cut(s) 900
Mph1103I ATGCAT 3 cut(s) 391, 694, 1094
MseI TTAA 4 cut(s) 219, 312, 746, 1038
MspI CCGG 3 cut(s) 61, 761, 1166
MspR9I CCNGG 1 cut(s) 61
MunI CAATTG 1 cut(s) 120
Mva1269I GAATGC 4 cut(s) 90, 391, 1187, 1210
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 4 cut(s) 94, 757, 917, 1162
NciI CCSGG 1 cut(s) 61
NcoI CCATGG 1 cut(s) 1303
NdeII GATC 8 cut(s) 109, 139, 513, 579, 622, 842, 942, 1299
NlaIV GGNNCC 1 cut(s) 844
NmeAIII GCCGAG 1 cut(s) 876
NmuCI GTSAC 1 cut(s) 865
NsiI ATGCAT 3 cut(s) 391, 694, 1094
NspI RCATGY 4 cut(s) 101, 696, 1092, 1203
NspV TTCGAA 1 cut(s) 383
PaeI GCATGC 2 cut(s) 1092, 1203
PaeR7I CTCGAG 3 cut(s) 12, 425, 736
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 1071
PctI GAATGC 4 cut(s) 90, 391, 1187, 1210
PfeI GAWTC 3 cut(s) 331, 661, 1062
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 4 cut(s) 94, 726, 826, 1240
PleI GAGTC 1 cut(s) 900
PpsI GAGTC 1 cut(s) 900
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 844
PspPI GGNCC 1 cut(s) 130
PspPPI RGGWCCY 1 cut(s) 130
PspXI VCTCGAGB 3 cut(s) 12, 425, 736
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 3 cut(s) 622, 842, 1299
RsaI GTAC 3 cut(s) 285, 800, 1332
RsaNI GTAC 3 cut(s) 284, 799, 1331
SalI GTCGAC 1 cut(s) 1097
SaqAI TTAA 4 cut(s) 219, 312, 746, 1038
SatI GCNGC 4 cut(s) 93, 725, 825, 1239
Sau3AI GATC 8 cut(s) 109, 139, 513, 579, 622, 842, 942, 1299
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 1 cut(s) 900
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 3 cut(s) 305, 422, 655
SfaNI GCATC 5 cut(s) 215, 604, 679, 750, 1143
Sfr274I CTCGAG 3 cut(s) 12, 425, 736
SfuI TTCGAA 1 cut(s) 383
SinI GGWCC 1 cut(s) 130
SlaI CTCGAG 3 cut(s) 12, 425, 736
SmlI CTYRAG 4 cut(s) 12, 364, 425, 736
SmoI CTYRAG 4 cut(s) 12, 364, 425, 736
SpeI ACTAGT 1 cut(s) 479
SphI GCATGC 2 cut(s) 1092, 1203
Sse9I AATT 7 cut(s) 120, 605, 859, 874, 1139, 1248, 1347
SsiI CCGC 5 cut(s) 492, 810, 824, 1133, 1275
SspMI CTAG 4 cut(s) 480, 1124, 1226, 1334
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 2 cut(s) 1192, 1303
TaaI ACNGT 3 cut(s) 283, 574, 1328
TaiI ACGT 3 cut(s) 162, 987, 1077
TasI AATT 7 cut(s) 120, 605, 859, 874, 1139, 1248, 1347
TatI WGTACW 1 cut(s) 1330
TauI GCSGC 1 cut(s) 827
TfiI GAWTC 3 cut(s) 331, 661, 1062
Tru1I TTAA 4 cut(s) 219, 312, 746, 1038
Tru9I TTAA 4 cut(s) 219, 312, 746, 1038
TscAI CASTG 2 cut(s) 589, 1333
TseFI GTSAC 1 cut(s) 865
TseI GCWGC 3 cut(s) 92, 724, 1238
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 5 cut(s) 323, 555, 981, 1061, 1367
TspGWI ACGGA 2 cut(s) 228, 338
TspRI CASTG 2 cut(s) 589, 1333
VneI GTGCAC 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 3 cut(s) 605, 859, 874
XceI RCATGY 4 cut(s) 101, 696, 1092, 1203
XhoI CTCGAG 3 cut(s) 12, 425, 736
XmiI GTMKAC 2 cut(s) 269, 1098
XspI CTAG 4 cut(s) 480, 1124, 1226, 1334
ZraI GACGTC 1 cut(s) 160
Zsp2I ATGCAT 3 cut(s) 391, 694, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.