FvH4_1g26880

glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
18698110 .. 18699948
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26880.t1

Sequence Viewer

Length: 1629 bp
ATGCCCAAGGGCTTTTTCTTCAAGCCATTTTTCTTTCTATATCGCATTTTCTTTCGGAAGAGCAAGCGTTTTCAGAGAAGTGCTAGCAAAGGCCATGCAAACCAGTCCAAGAGTCATATACACGAGTTCGATGATTTTACCCATAGATGCCAAGACTTCTCGAACCAATCTCCCATCATCTTCAACATGGAAGAAGCTTTGCTGAAATCTTCTTCTGTGTTCCCCTACTTCATGCTTGTGGCTTTTGAAGCTGGAACTCTACTAAGGGCCCTAGTTCTTTTTCTTATGTACCCTCTTACGTTCTTGGTAAGTGAAAAAGTAGGGTTGAAAATGATGGTCATGGTCTGCTTCTTTGGGATTAAGAAGGACAGCTTCAGAGTTGGAAGCTCTGTGTTGCCTAAGTTCTTCTTAGAAGATGTTGGGTTGGAAAGCTTTGAGGTGCTTCAGAGATATGGGAACAAGAAAGTTGGCGTCAGTAATCTCCCTCAAGTTTTGATCGAGACCTTCTTGAAAGACTATCTGGAGATTGATGTGGTGATTGGAAGGGAGCTAAAGGTGTTTGGTGGATACTTTTTGGGTCTCATGGAAGATAAGAAGACGATTAATTTGACTGTCTTGGAAGAACATGGTAGCGACGACAAATTGGGTAGTTCAGATATAATTGGCATTACTTCCTTCAACCAACGTCTTGATGACCCAATATTCTCGTCTTGCAAGGATGTTTACCGAGTGAGAAGCTCTGATAAGAGGAGCTGGAAGAACCTGCCGAGAGAGAAGTACCCAAATAAACTCATCTTCCATGATGGCAGACTCGCTCTCAAACCAACGCCACTAGAGACTGTAGCAATCTTCATGTGGGCGCCAGCTGGGTTTGTACTTGCAGTCGTCAGACTGCTCATCGGTATATCGCTTCCCTACTGCGTGTCCTCGCCTCTGCTCGCCTTCACCGGTCTTCGGCTGACGGTTACGACGCCACAGACGACTCGGACCCTTGTTCCAAACGAGCCTCTAGTAGTTCAAAATGCTAAACCCAAAGGCGTCCTCTACGTTTGTAACCATAGAACACTATTAGACCCCCTGTACTTATGTTTCTCACTGGGGAAAAATCTCCATGCGGTTACCTACAGTCTGAGCAAGATATCGGAGATACTGGCTCCGATCAAGACTGTCCGATTAACTAGGAATCGGCAGCAGGATCAGGATATGATGGAGAGGTTGTTGAGTCAAGGGGACGTGGTGGTTTGCCCAGAAGGAACCACATGTCGTGAGCCGTACCTACTCAGGTTCAGCCCCTTATTCTCAGAAATAAGTGATGAAATTATTCCGGTTGCCGTTAACACCCACGTTAGCATGTTTCATGGTACGACGGCTGGTGGGCTCAAGAGTCTGGATCCGGTCTTCTTCCTCCTCAACCCTTCACCGATCTACACGATTCAATTGCTGGAGAAGGTGTCATCGGAAGTGTCATCGTGTGCTGATGGGTCGACGTCGAGGTTTGATGTGGCAAACTACGTCCAAAGGGAGCTTGGTAAGGTTTTGGGGTTTGAATGTACAAAGCTTACAAGGAGAGACAAGTACTTGATTTTGGCAGGAAATGAAGGCAGGGCTGGTTGTACAACTACTGCATGA

Protein Analysis

543

Amino Acids

61.17

Weight (kDa)

9.05

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_RAM2_N PF23270 59 - 244 6.2e-65 Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
Acyltransferase PF01553 343 - 444 7.5e-08 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1490
Acc36I ACCTGC 1 cut(s) 771
AccB1I GGYRCC 1 cut(s) 859
AccI GTMKAC 1 cut(s) 1484
AciI CCGC 1 cut(s) 1115
AclWI GGATC 3 cut(s) 1203, 1385, 1398
AcuI CTGAAG 2 cut(s) 358, 428
AcyI GRCGYC 5 cut(s) 471, 860, 971, 1038, 1487
AfaI GTAC 9 cut(s) 290, 779, 876, 1082, 1274, 1363, 1552, 1577, 1615
AfiI CCNNNNNNNGG 1 cut(s) 954
AflIII ACRYGT 1 cut(s) 1259
AgeI ACCGGT 1 cut(s) 947
AgsI TTSAA 9 cut(s) 22, 184, 248, 328, 511, 679, 1019, 1436, 1547
AjiI CACGTC 1 cut(s) 1234
AjuI GAANNNNNNNTTGG 1 cut(s) 31
Alw26I GTCTC 4 cut(s) 494, 584, 830, 1563
AlwI GGATC 3 cut(s) 1203, 1385, 1398
AoxI GGCC 2 cut(s) 91, 267
ApaI GGGCCC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 1189
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AseI ATTAAT 1 cut(s) 603
AsiGI ACCGGT 1 cut(s) 947
Asp700I GAANNNNTTC 1 cut(s) 1320
AspLEI GCGC 1 cut(s) 862
AspS9I GGNCC 3 cut(s) 267, 268, 987
AsuHPI GGTGA 3 cut(s) 547, 937, 1410
AsuNHI GCTAGC 1 cut(s) 83
AvaII GGWCC 1 cut(s) 987
BaeGI GKGCMC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 1390
BanI GGYRCC 1 cut(s) 859
BanII GRGCYC 2 cut(s) 271, 1380
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 3 cut(s) 602, 944, 1390
BbvI GCAGC 1 cut(s) 1201
BccI CCATC 5 cut(s) 182, 328, 797, 1201, 1472
BceAI ACGGC 3 cut(s) 1255, 1316, 1383
BcgI CGANNNNNNTGC 2 cut(s) 1420, 1454
BciVI GTATCC 1 cut(s) 560
BcoDI GTCTC 4 cut(s) 494, 584, 830, 1563
BfaI CTAG 5 cut(s) 84, 272, 833, 1010, 1179
BfmI CTRYAG 2 cut(s) 840, 1123
BfoI RGCGCY 1 cut(s) 863
BfuAI ACCTGC 1 cut(s) 771
BfuI GTATCC 1 cut(s) 560
BisI GCNGC 1 cut(s) 1190
BlsI GCNGC 1 cut(s) 1191
BmcAI AGTACT 1 cut(s) 1577
Bme18I GGWCC 1 cut(s) 987
BmgBI CACGTC 1 cut(s) 1234
BmgT120I GGNCC 3 cut(s) 267, 268, 987
BmiI GGNNCC 6 cut(s) 269, 861, 989, 1155, 1255, 1392
BmrI ACTGGG 1 cut(s) 1106
BmsI GCATC 1 cut(s) 137
BmtI GCTAGC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 1106
BpiI GAAGAC 3 cut(s) 602, 944, 1390
BpmI CTGGAG 2 cut(s) 542, 1463
BpuEI CTTGAG 2 cut(s) 471, 1364
BsaHI GRCGYC 5 cut(s) 471, 860, 971, 1038, 1487
BsaI GGTCTC 2 cut(s) 494, 584
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 3 cut(s) 947, 1324, 1393
BsaXI ACNNNNNCTCC 4 cut(s) 1202, 1232, 1436, 1466
Bsc4I CCNNNNNNNGG 1 cut(s) 954
Bse118I RCCGGY 1 cut(s) 947
Bse1I ACTGG 3 cut(s) 103, 1101, 1155
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 724
BseLI CCNNNNNNNGG 1 cut(s) 954
BseMII CTCAG 3 cut(s) 1121, 1294, 1314
BseNI ACTGG 3 cut(s) 103, 1101, 1155
BseRI GAGGAG 2 cut(s) 763, 1397
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 1 cut(s) 1201
BseYI CCCAGC 1 cut(s) 866
BshFI GGCC 2 cut(s) 93, 269
BshNI GGYRCC 1 cut(s) 859
BshTI ACCGGT 1 cut(s) 947
BsiSI CCGG 3 cut(s) 948, 1325, 1394
BslFI GGGAC 1 cut(s) 1244
BslI CCNNNNNNNGG 1 cut(s) 954
BsmAI GTCTC 4 cut(s) 494, 584, 830, 1563
BsmFI GGGAC 1 cut(s) 1244
BsnI GGCC 2 cut(s) 93, 269
Bso31I GGTCTC 2 cut(s) 494, 584
Bsp120I GGGCCC 1 cut(s) 267
Bsp1286I GDGCHC 2 cut(s) 271, 1380
Bsp1407I TGTACA 2 cut(s) 1550, 1613
Bsp143I GATC 5 cut(s) 495, 1158, 1195, 1390, 1422
BspACI CCGC 1 cut(s) 1115
BspANI GGCC 2 cut(s) 93, 269
BspCNI CTCAG 3 cut(s) 1122, 1293, 1313
BspLI GGNNCC 6 cut(s) 269, 861, 989, 1155, 1255, 1392
BspMI ACCTGC 1 cut(s) 771
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 3 cut(s) 1203, 1385, 1398
BspQI GCTCTTC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 859
BspTNI GGTCTC 2 cut(s) 494, 584
BsrFI RCCGGY 1 cut(s) 947
BsrGI TGTACA 2 cut(s) 1550, 1613
BsrI ACTGG 3 cut(s) 103, 1101, 1155
BssAI RCCGGY 1 cut(s) 947
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 5 cut(s) 495, 1158, 1195, 1390, 1422
BssNI GRCGYC 5 cut(s) 471, 860, 971, 1038, 1487
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 122
Bst4CI ACNGT 5 cut(s) 613, 841, 964, 1127, 1168
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 5 cut(s) 471, 860, 971, 1038, 1487
BstAUI TGTACA 2 cut(s) 1550, 1613
BstC8I GCNNGC 4 cut(s) 65, 85, 864, 939
BstDEI CTNAG 6 cut(s) 263, 399, 409, 1130, 1280, 1300
BstEII GGTNACC 1 cut(s) 1117
BstF5I GGATG 1 cut(s) 724
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 5 cut(s) 498, 1161, 1198, 1393, 1425
BstMAI GTCTC 4 cut(s) 494, 584, 830, 1563
BstMBI GATC 5 cut(s) 495, 1158, 1195, 1390, 1422
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNSI RCATGY 2 cut(s) 1263, 1354
BstPI GGTNACC 1 cut(s) 1117
BstSFI CTRYAG 2 cut(s) 840, 1123
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 1201
BstV2I GAAGAC 3 cut(s) 602, 944, 1390
BstX2I RGATCY 1 cut(s) 1390
BstYI RGATCY 1 cut(s) 1390
BsuI GTATCC 1 cut(s) 560
BsuRI GGCC 2 cut(s) 93, 269
BtrI CACGTC 1 cut(s) 1234
BtsCI GGATG 1 cut(s) 724
BtsIMutI CAGTG 1 cut(s) 1094
BveI ACCTGC 1 cut(s) 771
Cac8I GCNNGC 4 cut(s) 65, 85, 864, 939
CfoI GCGC 1 cut(s) 862
Cfr10I RCCGGY 1 cut(s) 947
Cfr13I GGNCC 3 cut(s) 267, 268, 987
CseI GACGC 3 cut(s) 460, 979, 1027
Csp6I GTAC 9 cut(s) 289, 778, 875, 1081, 1273, 1362, 1551, 1576, 1614
CspAI ACCGGT 1 cut(s) 947
CviQI GTAC 9 cut(s) 289, 778, 875, 1081, 1273, 1362, 1551, 1576, 1614
DdeI CTNAG 6 cut(s) 263, 399, 409, 1130, 1280, 1300
DinI GGCGCC 1 cut(s) 861
DpnI GATC 5 cut(s) 497, 1160, 1197, 1392, 1424
DpnII GATC 5 cut(s) 495, 1158, 1195, 1390, 1422
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 271, 1380
Eco31I GGTCTC 2 cut(s) 494, 584
Eco32I GATATC 1 cut(s) 1140
Eco47I GGWCC 1 cut(s) 987
Eco57I CTGAAG 2 cut(s) 358, 428
Eco91I GGTNACC 1 cut(s) 1117
EcoO109I RGGNCCY 2 cut(s) 267, 268
EcoO65I GGTNACC 1 cut(s) 1117
EcoRV GATATC 1 cut(s) 1140
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 271, 1380
EgeI GGCGCC 1 cut(s) 861
EheI GGCGCC 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 6
FalI AAGNNNNNCTT 4 cut(s) 356, 388, 392, 424
FaqI GGGAC 1 cut(s) 1244
FblI GTMKAC 1 cut(s) 1484
Fnu4HI GCNGC 1 cut(s) 1190
FokI GGATG 1 cut(s) 731
FriOI GRGCYC 2 cut(s) 271, 1380
Fsp4HI GCNGC 1 cut(s) 1190
FspBI CTAG 5 cut(s) 84, 272, 833, 1010, 1179
GlaI GCGC 1 cut(s) 861
GluI GCNGC 1 cut(s) 1190
GsaI CCCAGC 1 cut(s) 870
GsuI CTGGAG 2 cut(s) 542, 1463
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 2 cut(s) 93, 269
HapII CCGG 3 cut(s) 948, 1325, 1394
HgaI GACGC 3 cut(s) 460, 979, 1027
HhaI GCGC 1 cut(s) 862
Hin1I GRCGYC 5 cut(s) 471, 860, 971, 1038, 1487
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HincII GTYRAC 2 cut(s) 1336, 1485
HindII GTYRAC 2 cut(s) 1336, 1485
HindIII AAGCTT 3 cut(s) 195, 430, 1556
HinfI GANTC 7 cut(s) 112, 810, 982, 1183, 1222, 1384, 1432
HpaI GTTAAC 1 cut(s) 1336
HpaII CCGG 3 cut(s) 948, 1325, 1394
HphI GGTGA 3 cut(s) 547, 937, 1410
Hpy166II GTNNAC 3 cut(s) 724, 1336, 1485
Hpy8I GTNNAC 3 cut(s) 724, 1336, 1485
Hpy99I CGWCG 5 cut(s) 638, 973, 1369, 1489, 1492
HpyAV CCTTC 9 cut(s) 358, 514, 537, 685, 952, 1244, 1425, 1441, 1592
HpyCH4III ACNGT 5 cut(s) 613, 841, 964, 1127, 1168
HpyCH4IV ACGT 7 cut(s) 299, 685, 1047, 1233, 1344, 1487, 1512
HpyCH4V TGCA 4 cut(s) 98, 714, 881, 1625
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 6 cut(s) 263, 399, 409, 1130, 1280, 1300
HpySE526I ACGT 7 cut(s) 299, 685, 1047, 1233, 1344, 1487, 1512
Hsp92I GRCGYC 5 cut(s) 471, 860, 971, 1038, 1487
HspAI GCGC 1 cut(s) 860
KasI GGCGCC 1 cut(s) 859
KspAI GTTAAC 1 cut(s) 1336
Kzo9I GATC 5 cut(s) 495, 1158, 1195, 1390, 1422
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 4 cut(s) 547, 750, 1159, 1522
Lsp1109I GCAGC 1 cut(s) 1201
LweI GCATC 1 cut(s) 137
MaeI CTAG 5 cut(s) 84, 272, 833, 1010, 1179
MaeII ACGT 7 cut(s) 299, 685, 1047, 1233, 1344, 1487, 1512
MaeIII GTNAC 3 cut(s) 964, 1052, 1117
MalI GATC 5 cut(s) 497, 1160, 1197, 1392, 1424
MboI GATC 5 cut(s) 495, 1158, 1195, 1390, 1422
MfeI CAATTG 1 cut(s) 1436
MflI RGATCY 1 cut(s) 1390
MhlI GDGCHC 2 cut(s) 271, 1380
MluCI AATT 5 cut(s) 604, 641, 660, 1317, 1436
Mly113I GGCGCC 1 cut(s) 860
MlyI GAGTC 5 cut(s) 121, 804, 976, 1231, 1393
MmeI TCCRAC 2 cut(s) 361, 405
MroXI GAANNNNTTC 1 cut(s) 1320
MseI TTAA 4 cut(s) 360, 603, 1175, 1335
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 866
MspI CCGG 3 cut(s) 948, 1325, 1394
MunI CAATTG 1 cut(s) 1436
MwoI GCNNNNNNNGC 1 cut(s) 248
NarI GGCGCC 1 cut(s) 860
NdeII GATC 5 cut(s) 495, 1158, 1195, 1390, 1422
NheI GCTAGC 1 cut(s) 83
NlaIV GGNNCC 6 cut(s) 269, 861, 989, 1155, 1255, 1392
NmeAIII GCCGAG 1 cut(s) 792
NspI RCATGY 2 cut(s) 1263, 1354
PciI ACATGT 1 cut(s) 1259
PciSI GCTCTTC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 977
PdmI GAANNNNTTC 1 cut(s) 1320
PfeI GAWTC 2 cut(s) 1183, 1432
PinAI ACCGGT 1 cut(s) 947
PkrI GCNGC 1 cut(s) 1191
PleI GAGTC 5 cut(s) 120, 804, 976, 1230, 1392
PluTI GGCGCC 1 cut(s) 863
PpsI GAGTC 5 cut(s) 120, 804, 976, 1230, 1392
PscI ACATGT 1 cut(s) 1259
PshBI ATTAAT 1 cut(s) 603
PspEI GGTNACC 1 cut(s) 1117
PspFI CCCAGC 1 cut(s) 866
PspN4I GGNNCC 6 cut(s) 269, 861, 989, 1155, 1255, 1392
PspOMI GGGCCC 1 cut(s) 267
PspPI GGNCC 3 cut(s) 267, 268, 987
PsuI RGATCY 1 cut(s) 1390
PvuII CAGCTG 1 cut(s) 866
RsaI GTAC 9 cut(s) 290, 779, 876, 1082, 1274, 1363, 1552, 1577, 1615
RsaNI GTAC 9 cut(s) 289, 778, 875, 1081, 1273, 1362, 1551, 1576, 1614
RseI CAYNNNNRTG 1 cut(s) 236
SalI GTCGAC 1 cut(s) 1483
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 4 cut(s) 360, 603, 1175, 1335
SatI GCNGC 1 cut(s) 1190
Sau3AI GATC 5 cut(s) 495, 1158, 1195, 1390, 1422
Sau96I GGNCC 3 cut(s) 267, 268, 987
ScaI AGTACT 1 cut(s) 1577
SchI GAGTC 5 cut(s) 121, 804, 976, 1231, 1393
SduI GDGCHC 2 cut(s) 271, 1380
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 2 cut(s) 840, 1123
SfoI GGCGCC 1 cut(s) 861
SinI GGWCC 1 cut(s) 987
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 486, 1379
SmoI CTYRAG 2 cut(s) 486, 1379
Sse9I AATT 5 cut(s) 604, 641, 660, 1317, 1436
SsiI CCGC 1 cut(s) 1115
SspDI GGCGCC 1 cut(s) 859
SspI AATATT 1 cut(s) 702
SspMI CTAG 5 cut(s) 84, 272, 833, 1010, 1179
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 5 cut(s) 613, 841, 964, 1127, 1168
TaiI ACGT 7 cut(s) 302, 688, 1050, 1236, 1347, 1490, 1515
TaqI TCGA 5 cut(s) 129, 161, 498, 1484, 1490
TasI AATT 5 cut(s) 604, 641, 660, 1317, 1436
TatI WGTACW 5 cut(s) 874, 1080, 1550, 1575, 1613
TfiI GAWTC 2 cut(s) 1183, 1432
Tru1I TTAA 4 cut(s) 360, 603, 1175, 1335
Tru9I TTAA 4 cut(s) 360, 603, 1175, 1335
TscAI CASTG 1 cut(s) 1101
TseI GCWGC 1 cut(s) 1189
TspDTI ATGAA 5 cut(s) 220, 841, 1329, 1346, 1611
TspRI CASTG 1 cut(s) 1101
VpaK11BI GGWCC 1 cut(s) 987
VspI ATTAAT 1 cut(s) 603
XceI RCATGY 2 cut(s) 1263, 1354
XcmI CCANNNNNNNNNTGG 1 cut(s) 1523
XmiI GTMKAC 1 cut(s) 1484
XmnI GAANNNNTTC 1 cut(s) 1320
XspI CTAG 5 cut(s) 84, 272, 833, 1010, 1179
ZraI GACGTC 1 cut(s) 1488
ZrmI AGTACT 1 cut(s) 1577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.