Rh3BG315500

glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
32253897 .. 32255960
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG315500.1

Sequence Viewer

Length: 1629 bp
ATGCCCAAGCCCTTTTTCTTCAAGCCATTTTTCTTTCTATATCGCATTTTCTTTCGGAAATCCAAACGTTTTCAGAGCAGTGCTAGCAACAGCCATGCAAGCCAGTCCAAAAGTCATATACACGCATTTGATAATTTTGCCCATAGATACCCAGACCTCAAGAACCTATCTCTCATCATCTTCAACATGGAAGAAGCTTTGCTGAAATCCTCTTCTTTGTTCCCCTACTTCATGCTTGTGGCTTTTGAGGCTGGAAGTCTATTAAGGGCCTTTGTTCTTTTTCTTTTGTACCCTCTTATGTTCTTGGTCAGTGAAGAAGTAGGGTTGAAAATCATGGTCATGGTCTGCTTCTTTGGGATTAAGAAGGAGAGCTTCAGAATTGGAAGAGCTGTGTTGCCTAAGTTCTTCTTAGAAGATGTTGGGTTAGAAAGCTTTGAGGTGCTTCAGAGAGCTGGGAAAAAGAAAGTTGGCGTCAGTAATCTTCCTCAAGTTTTGATCGAGACCTTCTTGAAAGACTATCTGGAGATTGATGTGGTGATTGGGAGGGAGCTAAAGGTGTTTGGTGGATACTTTTTGGGTCTCATGGAAGAAAAGAAGAATACTAATTTGAGTATCCTGGAAGAACATGGTGGACACGAGTCACACGACAAAATGGGTAGCTCGGATATAATTGGCATTACTTCCTTCAACCAACGTCTTGATGACCCAATATTCTCTTATTGCAAGGATGTTTACCGAGTGAGAAGCTCTGATAAGAGGAGCTGGAAGAACCTGCCCAAAGAGAAGTACCCAAAGAAACTCATCTTCCATGATGGCAGACTCGCTCTCAAACCAACGCCACTAGAAACTGTAGCAATCTTCATGTGGGCCCCAGTTGGGTTTGTACTTGTAGTCGTCAGAATCCTCCTCGGCATATCGCTTCCCTACGAAGTGTCGTCTCCTCTGCTCGCCTTCACCGGTCTGCGGCTGACGGTTAGGACGCCACAAACTGAAAGCCTCGTTCAAAAGGACCCTCGACTTCCAAACGGTAAGCCCAAAGGCGTCCTCTACGTTTGTAACCATAGAACACTACTAGACCCTATGTACTTATGTTTCGCACTGGGGAAAAATCTCCATGCGGTTACGTACAGTCTAAGCAAAATGTCGGAGATACTAGCTCCGATCAAGACCGTCCGATTAACAAGAAATCGACAGCAAGATCAGGATATGATGGAAAGGTTGTTGAGTCAAGGGGACCTGGTGGTTTGCCCCGAAGGAACGACATGTCGTGAGCCCTACCTACTCAGGTTCAGCCCCTTGTTTTCAGAAGTAAGTGATGAAATTGTCCCCGTTGCGGTTGACTGCCACGTTAGCATGTTTCATGGTACGACGGCTGGTGGGCTCAAGAGTCTGGATCCGGTCTTCTTCCTCCTCAACCCTTCACCGATCTACACCGTGCAGTTGCTGGAGAAGGTGTCATCGGAAGTGTCCTCGTGTCGTGATGGGTCGACGTCGAGGTTTGATGTGGCTAACTACGTCCAAAGGGAGCTTGGTAAGGTTTTGGGGTTTGAATGTACAGAGCTTACAAGGAGAGAGAAGTACTTGACTTTGGCAGGAAATGAAGGCAAAGCTGGTTGTAAAACTGCATGA

Protein Analysis

542

Amino Acids

61.47

Weight (kDa)

9.11

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_RAM2_N PF23270 59 - 247 1.3e-67 Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
Acyltransferase PF01553 346 - 445 2.1e-08 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1493
Acc36I ACCTGC 1 cut(s) 780
AccI GTMKAC 1 cut(s) 1487
AciI CCGC 3 cut(s) 964, 1118, 1334
AclI AACGTT 1 cut(s) 67
AclWI GGATC 2 cut(s) 1388, 1401
AcuI CTGAAG 2 cut(s) 358, 428
AcyI GRCGYC 4 cut(s) 471, 980, 1041, 1490
AfaI GTAC 8 cut(s) 290, 788, 885, 1085, 1127, 1366, 1555, 1580
AfiI CCNNNNNNNGG 3 cut(s) 876, 963, 1333
AflIII ACRYGT 1 cut(s) 1262
AgeI ACCGGT 1 cut(s) 956
AgsI TTSAA 7 cut(s) 22, 184, 328, 511, 688, 1004, 1550
AjnI CCWGG 2 cut(s) 615, 1236
AjuI GAANNNNNNNTTGG 1 cut(s) 31
Alw26I GTCTC 3 cut(s) 494, 584, 942
AlwI GGATC 2 cut(s) 1388, 1401
AlwNI CAGNNNCTG 1 cut(s) 1444
AoxI GGCC 2 cut(s) 267, 867
ApaI GGGCCC 1 cut(s) 871
AsiGI ACCGGT 1 cut(s) 956
AspS9I GGNCC 5 cut(s) 267, 867, 868, 1009, 1234
AsuHPI GGTGA 3 cut(s) 547, 946, 1413
AsuNHI GCTAGC 1 cut(s) 83
AvaII GGWCC 2 cut(s) 1009, 1234
BaeGI GKGCMC 1 cut(s) 871
BamHI GGATCC 1 cut(s) 1393
BanII GRGCYC 3 cut(s) 871, 1275, 1383
BauI CACGAG 2 cut(s) 635, 1471
BbsI GAAGAC 1 cut(s) 1393
BccI CCATC 3 cut(s) 806, 1204, 1475
BceAI ACGGC 1 cut(s) 1386
BciT130I CCWGG 2 cut(s) 617, 1238
BciVI GTATCC 2 cut(s) 560, 623
BcoDI GTCTC 3 cut(s) 494, 584, 942
BfaI CTAG 4 cut(s) 84, 842, 1073, 1154
BfmI CTRYAG 1 cut(s) 849
BfuAI ACCTGC 1 cut(s) 780
BfuI GTATCC 2 cut(s) 560, 623
BisI GCNGC 1 cut(s) 965
BlsI GCNGC 1 cut(s) 966
BmcAI AGTACT 1 cut(s) 1580
Bme1390I CCNGG 2 cut(s) 617, 1238
Bme18I GGWCC 2 cut(s) 1009, 1234
BmgT120I GGNCC 5 cut(s) 267, 867, 868, 1009, 1234
BmiI GGNNCC 5 cut(s) 869, 870, 1011, 1235, 1395
BmrFI CCNGG 2 cut(s) 617, 1238
BmrI ACTGGG 2 cut(s) 866, 1109
BmtI GCTAGC 1 cut(s) 87
BmuI ACTGGG 2 cut(s) 866, 1109
BoxI GACNNNNGTC 1 cut(s) 637
BpiI GAAGAC 1 cut(s) 1393
BpmI CTGGAG 2 cut(s) 542, 1466
BpuEI CTTGAG 3 cut(s) 143, 471, 1367
BsaAI YACGTR 1 cut(s) 1125
BsaHI GRCGYC 4 cut(s) 471, 980, 1041, 1490
BsaI GGTCTC 2 cut(s) 494, 584
BsaJI CCNNGG 1 cut(s) 907
BsaWI WCCGGW 2 cut(s) 956, 1396
BsaXI ACNNNNNCTCC 2 cut(s) 1439, 1469
Bsc4I CCNNNNNNNGG 3 cut(s) 876, 963, 1333
Bse118I RCCGGY 1 cut(s) 956
Bse1I ACTGG 3 cut(s) 103, 872, 1104
BseBI CCWGG 2 cut(s) 617, 1238
BseDI CCNNGG 1 cut(s) 907
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 3 cut(s) 876, 963, 1333
BseMII CTCAG 1 cut(s) 1297
BseNI ACTGG 3 cut(s) 103, 872, 1104
BseRI GAGGAG 4 cut(s) 772, 896, 930, 1400
BseSI GKGCMC 1 cut(s) 871
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 1 cut(s) 1457
BshFI GGCC 2 cut(s) 269, 869
BshTI ACCGGT 1 cut(s) 956
BsiSI CCGG 2 cut(s) 957, 1397
BslFI GGGAC 2 cut(s) 1247, 1310
BslI CCNNNNNNNGG 3 cut(s) 876, 963, 1333
BsmAI GTCTC 3 cut(s) 494, 584, 942
BsmBI CGTCTC 1 cut(s) 942
BsmFI GGGAC 2 cut(s) 1247, 1310
BsnI GGCC 2 cut(s) 269, 869
Bso31I GGTCTC 2 cut(s) 494, 584
Bsp120I GGGCCC 1 cut(s) 867
Bsp1286I GDGCHC 3 cut(s) 871, 1275, 1383
Bsp1407I TGTACA 1 cut(s) 1553
Bsp143I GATC 5 cut(s) 495, 1161, 1198, 1393, 1425
BspACI CCGC 3 cut(s) 964, 1118, 1334
BspANI GGCC 2 cut(s) 269, 869
BspCNI CTCAG 1 cut(s) 1296
BspLI GGNNCC 5 cut(s) 869, 870, 1011, 1235, 1395
BspMI ACCTGC 1 cut(s) 780
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 2 cut(s) 1388, 1401
BspQI GCTCTTC 1 cut(s) 379
BspTNI GGTCTC 2 cut(s) 494, 584
BsrFI RCCGGY 1 cut(s) 956
BsrGI TGTACA 1 cut(s) 1553
BsrI ACTGG 3 cut(s) 103, 872, 1104
BssAI RCCGGY 1 cut(s) 956
BssECI CCNNGG 1 cut(s) 907
BssMI GATC 5 cut(s) 495, 1161, 1198, 1393, 1425
BssNI GRCGYC 4 cut(s) 471, 980, 1041, 1490
BssSI CACGAG 2 cut(s) 635, 1471
Bst2BI CACGAG 2 cut(s) 635, 1471
Bst2UI CCWGG 2 cut(s) 617, 1238
Bst4CI ACNGT 6 cut(s) 850, 973, 1028, 1130, 1171, 1435
Bst6I CTCTTC 2 cut(s) 217, 379
BstACI GRCGYC 4 cut(s) 471, 980, 1041, 1490
BstAUI TGTACA 1 cut(s) 1553
BstBAI YACGTR 1 cut(s) 1125
BstC8I GCNNGC 3 cut(s) 85, 100, 948
BstDEI CTNAG 4 cut(s) 399, 409, 1133, 1283
BstF5I GGATG 1 cut(s) 733
BstKTI GATC 5 cut(s) 498, 1164, 1201, 1396, 1428
BstMAI GTCTC 3 cut(s) 494, 584, 942
BstMBI GATC 5 cut(s) 495, 1161, 1198, 1393, 1425
BstMWI GCNNNNNNNGC 4 cut(s) 84, 99, 248, 1350
BstNI CCWGG 2 cut(s) 617, 1238
BstNSI RCATGY 2 cut(s) 1266, 1357
BstPAI GACNNNNGTC 1 cut(s) 637
BstSCI CCNGG 2 cut(s) 615, 1236
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 1 cut(s) 871
BstSNI TACGTA 1 cut(s) 1125
BstV2I GAAGAC 1 cut(s) 1393
BstX2I RGATCY 1 cut(s) 1393
BstYI RGATCY 1 cut(s) 1393
BsuI GTATCC 2 cut(s) 560, 623
BsuRI GGCC 2 cut(s) 269, 869
BtsCI GGATG 1 cut(s) 733
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 3 cut(s) 85, 316, 1097
BveI ACCTGC 1 cut(s) 780
Cac8I GCNNGC 3 cut(s) 85, 100, 948
CaiI CAGNNNCTG 1 cut(s) 1444
Cfr10I RCCGGY 1 cut(s) 956
Cfr13I GGNCC 5 cut(s) 267, 867, 868, 1009, 1234
CseI GACGC 3 cut(s) 460, 988, 1030
CsiI ACCWGGT 1 cut(s) 1236
Csp6I GTAC 8 cut(s) 289, 787, 884, 1084, 1126, 1365, 1554, 1579
CspAI ACCGGT 1 cut(s) 956
CviQI GTAC 8 cut(s) 289, 787, 884, 1084, 1126, 1365, 1554, 1579
DdeI CTNAG 4 cut(s) 399, 409, 1133, 1283
DpnI GATC 5 cut(s) 497, 1163, 1200, 1395, 1427
DpnII GATC 5 cut(s) 495, 1161, 1198, 1393, 1425
Eam1104I CTCTTC 2 cut(s) 217, 379
EarI CTCTTC 2 cut(s) 217, 379
Eco105I TACGTA 1 cut(s) 1125
Eco24I GRGCYC 3 cut(s) 871, 1275, 1383
Eco31I GGTCTC 2 cut(s) 494, 584
Eco47I GGWCC 2 cut(s) 1009, 1234
Eco57I CTGAAG 2 cut(s) 358, 428
EcoO109I RGGNCCY 4 cut(s) 267, 868, 1009, 1234
EcoRII CCWGG 2 cut(s) 615, 1236
EcoT38I GRGCYC 3 cut(s) 871, 1275, 1383
Esp3I CGTCTC 1 cut(s) 942
FalI AAGNNNNNCTT 4 cut(s) 356, 388, 392, 424
FaqI GGGAC 2 cut(s) 1247, 1310
FblI GTMKAC 1 cut(s) 1487
Fnu4HI GCNGC 1 cut(s) 965
FokI GGATG 1 cut(s) 740
FriOI GRGCYC 3 cut(s) 871, 1275, 1383
Fsp4HI GCNGC 1 cut(s) 965
FspBI CTAG 4 cut(s) 84, 842, 1073, 1154
GluI GCNGC 1 cut(s) 965
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 2 cut(s) 542, 1466
HaeIII GGCC 2 cut(s) 269, 869
HapII CCGG 2 cut(s) 957, 1397
HgaI GACGC 3 cut(s) 460, 988, 1030
Hin1I GRCGYC 4 cut(s) 471, 980, 1041, 1490
HincII GTYRAC 2 cut(s) 1339, 1488
HindII GTYRAC 2 cut(s) 1339, 1488
HindIII AAGCTT 2 cut(s) 195, 430
HinfI GANTC 5 cut(s) 638, 819, 900, 1225, 1387
HpaII CCGG 2 cut(s) 957, 1397
HphI GGTGA 3 cut(s) 547, 946, 1413
Hpy166II GTNNAC 4 cut(s) 632, 733, 1339, 1488
Hpy8I GTNNAC 4 cut(s) 632, 733, 1339, 1488
Hpy99I CGWCG 3 cut(s) 1372, 1492, 1495
HpyAV CCTTC 8 cut(s) 358, 514, 694, 961, 1247, 1428, 1444, 1595
HpyCH4III ACNGT 6 cut(s) 850, 973, 1028, 1130, 1171, 1435
HpyCH4IV ACGT 7 cut(s) 67, 694, 1050, 1124, 1347, 1490, 1515
HpyCH4V TGCA 4 cut(s) 98, 723, 1438, 1625
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 99, 248, 1350
HpyF3I CTNAG 4 cut(s) 399, 409, 1133, 1283
HpySE526I ACGT 7 cut(s) 67, 694, 1050, 1124, 1347, 1490, 1515
Hsp92I GRCGYC 4 cut(s) 471, 980, 1041, 1490
Kzo9I GATC 5 cut(s) 495, 1161, 1198, 1393, 1425
LguI GCTCTTC 1 cut(s) 379
LmnI GCTCC 4 cut(s) 547, 759, 1162, 1525
MabI ACCWGGT 1 cut(s) 1236
MaeI CTAG 4 cut(s) 84, 842, 1073, 1154
MaeII ACGT 7 cut(s) 67, 694, 1050, 1124, 1347, 1490, 1515
MaeIII GTNAC 3 cut(s) 639, 1055, 1120
MalI GATC 5 cut(s) 497, 1163, 1200, 1395, 1427
MboI GATC 5 cut(s) 495, 1161, 1198, 1393, 1425
MflI RGATCY 1 cut(s) 1393
MhlI GDGCHC 3 cut(s) 871, 1275, 1383
MluCI AATT 5 cut(s) 133, 378, 604, 669, 1320
MlyI GAGTC 4 cut(s) 647, 813, 1234, 1396
MmeI TCCRAC 1 cut(s) 1125
MseI TTAA 3 cut(s) 263, 360, 1178
MslI CAYNNNNRTG 2 cut(s) 236, 338
MspI CCGG 2 cut(s) 957, 1397
MspR9I CCNGG 2 cut(s) 617, 1238
MvaI CCWGG 2 cut(s) 617, 1238
MwoI GCNNNNNNNGC 4 cut(s) 84, 99, 248, 1350
NdeII GATC 5 cut(s) 495, 1161, 1198, 1393, 1425
NheI GCTAGC 1 cut(s) 83
NlaIV GGNNCC 5 cut(s) 869, 870, 1011, 1235, 1395
NmeAIII GCCGAG 1 cut(s) 888
NmuCI GTSAC 1 cut(s) 639
NspI RCATGY 2 cut(s) 1266, 1357
PciI ACATGT 1 cut(s) 1262
PciSI GCTCTTC 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PfeI GAWTC 1 cut(s) 900
PfoI TCCNGGA 1 cut(s) 615
PinAI ACCGGT 1 cut(s) 956
PkrI GCNGC 1 cut(s) 966
PleI GAGTC 4 cut(s) 646, 813, 1233, 1395
PpsI GAGTC 4 cut(s) 646, 813, 1233, 1395
Ppu21I YACGTR 1 cut(s) 1125
PpuMI RGGWCCY 2 cut(s) 1009, 1234
PscI ACATGT 1 cut(s) 1262
PshAI GACNNNNGTC 1 cut(s) 637
Psp1406I AACGTT 1 cut(s) 67
Psp5II RGGWCCY 2 cut(s) 1009, 1234
Psp6I CCWGG 2 cut(s) 615, 1236
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 2 cut(s) 615, 1236
PspN4I GGNNCC 5 cut(s) 869, 870, 1011, 1235, 1395
PspOMI GGGCCC 1 cut(s) 867
PspPI GGNCC 5 cut(s) 267, 867, 868, 1009, 1234
PspPPI RGGWCCY 2 cut(s) 1009, 1234
PstNI CAGNNNCTG 1 cut(s) 1444
PsuI RGATCY 1 cut(s) 1393
RsaI GTAC 8 cut(s) 290, 788, 885, 1085, 1127, 1366, 1555, 1580
RsaNI GTAC 8 cut(s) 289, 787, 884, 1084, 1126, 1365, 1554, 1579
RseI CAYNNNNRTG 2 cut(s) 236, 338
SalI GTCGAC 1 cut(s) 1486
SapI GCTCTTC 1 cut(s) 379
SaqAI TTAA 3 cut(s) 263, 360, 1178
SatI GCNGC 1 cut(s) 965
Sau3AI GATC 5 cut(s) 495, 1161, 1198, 1393, 1425
Sau96I GGNCC 5 cut(s) 267, 867, 868, 1009, 1234
ScaI AGTACT 1 cut(s) 1580
SchI GAGTC 4 cut(s) 647, 813, 1234, 1396
ScrFI CCNGG 2 cut(s) 617, 1238
SduI GDGCHC 3 cut(s) 871, 1275, 1383
SexAI ACCWGGT 1 cut(s) 1236
SfcI CTRYAG 1 cut(s) 849
SinI GGWCC 2 cut(s) 1009, 1234
SmiMI CAYNNNNRTG 2 cut(s) 236, 338
SmlI CTYRAG 3 cut(s) 158, 486, 1382
SmoI CTYRAG 3 cut(s) 158, 486, 1382
SnaBI TACGTA 1 cut(s) 1125
Sse9I AATT 5 cut(s) 133, 378, 604, 669, 1320
SsiI CCGC 3 cut(s) 964, 1118, 1334
SspI AATATT 1 cut(s) 711
SspMI CTAG 4 cut(s) 84, 842, 1073, 1154
StyD4I CCNGG 2 cut(s) 615, 1236
TaaI ACNGT 6 cut(s) 850, 973, 1028, 1130, 1171, 1435
TaiI ACGT 7 cut(s) 70, 697, 1053, 1127, 1350, 1493, 1518
TaqI TCGA 5 cut(s) 498, 1015, 1189, 1487, 1493
TasI AATT 5 cut(s) 133, 378, 604, 669, 1320
TatI WGTACW 4 cut(s) 883, 1083, 1553, 1578
TauI GCSGC 1 cut(s) 967
TfiI GAWTC 1 cut(s) 900
Tru1I TTAA 3 cut(s) 263, 360, 1178
Tru9I TTAA 3 cut(s) 263, 360, 1178
TscAI CASTG 3 cut(s) 85, 316, 1104
TseFI GTSAC 1 cut(s) 639
Tsp45I GTSAC 1 cut(s) 639
TspDTI ATGAA 5 cut(s) 220, 850, 1332, 1349, 1614
TspRI CASTG 3 cut(s) 85, 316, 1104
VpaK11BI GGWCC 2 cut(s) 1009, 1234
XceI RCATGY 2 cut(s) 1266, 1357
XcmI CCANNNNNNNNNTGG 1 cut(s) 1526
XmiI GTMKAC 1 cut(s) 1487
XspI CTAG 4 cut(s) 84, 842, 1073, 1154
ZraI GACGTC 1 cut(s) 1491
ZrmI AGTACT 1 cut(s) 1580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.