Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017234

Physical Location & Seq

Genomic Coordinates Forward (+)

18885875 .. 18887813

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCATCTGGGTATTCTCATCTAGGTCCGTCTTCTGTTGTTGCATGGTTTATATATTTGGGAGAATTTCAGAATTTGAACTCTGGAAGGGCTACTTTTATCCGCTTTCAATATGCTACCAATGTTGGCCCAGTTTTACTAAGTATGTGTTTTTCAATTTTCTCAGCTCCACAGGTTGATTCGACACATCACATGCAGCTGCTTGGTGCGTCCTATTTGCTTGCCATACGCAAAATGTATGATAGAGCGGTGATCAAGTTCAGGGGAGTAGAGACTGACATAAATTTTAACATTGAAGACTTTAAACAAGTGAGTACTGACTTGAATTCTTCAATTCATGCCTCAAGAAAGGCGATTGACGAGAAAAGAGACATTGCTCTTCTAATCTGTTTACTGGGAGGCAGTTGTAGTATAAGGTTCTACGCTCTTGTGGAGTTATCTACTGCATTATTTGGCAAACCTGCCTTTCAGAATCTCATTTGCAATGGACACATGAGTGCTGACGATGGAAAAAAAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

175

Amino Acids

19.33

Weight (kDa)

8.35

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017234)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27140 FvH4_1g27141 FvH4_3g27323 FvH4_3g27500 FvH4_4g11000 FvH4_4g11041 FvH4_4g11064 FvH4_5g27942 FvH4_5g27942 FvH4_7g05920 FvH4_7g06405 FvH4_7g06406
malus_domestica	MD03G1160800.v1.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	469
AccBSI	CCGCTC	1 cut(s)	248
AciI	CCGC	2 cut(s)	103, 248
AcsI	RAATTY	4 cut(s)	65, 73, 283, 325
AfaI	GTAC	1 cut(s)	316
AgsI	TTSAA	6 cut(s)	79, 110, 156, 296, 325, 333
AleI	CACNNNNGTG	1 cut(s)	495
AluBI	AGCT	2 cut(s)	167, 199
AluI	AGCT	2 cut(s)	167, 199
Alw26I	GTCTC	2 cut(s)	266, 363
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	196, 199
ApoI	RAATTY	4 cut(s)	65, 73, 283, 325
AspS9I	GGNCC	2 cut(s)	26, 128
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	26
BbsI	GAAGAC	2 cut(s)	24, 303
BbvI	GCAGC	2 cut(s)	186, 208
BccI	CCATC	1 cut(s)	500
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	266, 363
BfaI	CTAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	469
BisI	GCNGC	2 cut(s)	197, 200
BlsI	GCNGC	2 cut(s)	198, 201
BmcAI	AGTACT	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	26, 128
BmrI	ACTGGG	2 cut(s)	125, 404
BmuI	ACTGGG	2 cut(s)	125, 404
BpiI	GAAGAC	2 cut(s)	24, 303
BpuEI	CTTGAG	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	131, 399
Bse3DI	GCAATG	2 cut(s)	372, 490
BseMI	GCAATG	2 cut(s)	372, 490
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	131, 399
BseXI	GCAGC	2 cut(s)	186, 208
BshFI	GGCC	1 cut(s)	129
BsmAI	GTCTC	2 cut(s)	266, 363
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	103, 248
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	469
BspQI	GCTCTTC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	248
BsrDI	GCAATG	2 cut(s)	372, 490
BsrI	ACTGG	2 cut(s)	131, 399
BssMI	GATC	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	140, 163
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	2 cut(s)	266, 363
BstMBI	GATC	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	186, 208
BstV2I	GAAGAC	2 cut(s)	24, 303
BsuRI	GGCC	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	26, 128
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	4 cut(s)	45, 193, 338, 493
CviJI	RGCY	4 cut(s)	92, 129, 167, 199
CviKI_1	RGCY	4 cut(s)	92, 129, 167, 199
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	2 cut(s)	140, 163
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	325
FaeI	CATG	4 cut(s)	48, 196, 341, 496
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FatI	CATG	4 cut(s)	44, 192, 337, 492
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	197, 200
Fsp4HI	GCNGC	2 cut(s)	197, 200
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	2 cut(s)	197, 200
HaeIII	GGCC	1 cut(s)	129
HgaI	GACGC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	48, 196, 341, 496
HinfI	GANTC	2 cut(s)	179, 472
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	72, 471
Hpy188III	TCNNGA	2 cut(s)	84, 345
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	1 cut(s)	81
HpyCH4V	TGCA	4 cut(s)	44, 196, 446, 483
HpyF3I	CTNAG	2 cut(s)	140, 163
Hsp92II	CATG	4 cut(s)	48, 196, 341, 496
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	252
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	69, 144, 158, 247, 380, 474
Lsp1109I	GCAGC	2 cut(s)	186, 208
MaeI	CTAG	1 cut(s)	23
MalI	GATC	1 cut(s)	254
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	1 cut(s)	252
MboII	GAAGA	4 cut(s)	24, 308, 321, 371
MluCI	AATT	6 cut(s)	65, 73, 156, 283, 325, 333
MnlI	CCTC	2 cut(s)	352, 392
MseI	TTAA	2 cut(s)	288, 303
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	199
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	4 cut(s)	48, 196, 341, 496
NspI	RCATGY	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	179, 472
PkrI	GCNGC	2 cut(s)	198, 201
PspPI	GGNCC	2 cut(s)	26, 128
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	288, 303
SatI	GCNGC	2 cut(s)	197, 200
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	2 cut(s)	26, 128
ScaI	AGTACT	1 cut(s)	316
SetI	ASST	6 cut(s)	28, 169, 177, 201, 419, 463
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	6 cut(s)	65, 73, 156, 283, 325, 333
SsiI	CCGC	2 cut(s)	103, 248
SspMI	CTAG	1 cut(s)	23
TaqI	TCGA	1 cut(s)	182
TasI	AATT	6 cut(s)	65, 73, 156, 283, 325, 333
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	179, 472
Tru1I	TTAA	2 cut(s)	288, 303
Tru9I	TTAA	2 cut(s)	288, 303
TseI	GCWGC	2 cut(s)	196, 199
TspDTI	ATGAA	1 cut(s)	326
TspGWI	ACGGA	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	4 cut(s)	65, 73, 283, 325
XceI	RCATGY	1 cut(s)	196
XspI	CTAG	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.