Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017234

Physical Location & Seq

Genomic Coordinates Reverse (-)

20441728 .. 20445057

Gene Structure 3330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27323.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTGACGGAACTGTCGGGAGATACTATTTCTTGGGAAGCAGGCGCATATGTGAAGGGTAGACATTTGGAAACAGTTTCCGTGGTAAGCAAGGCGATTGACGAGAAAAGAGACATTGCCCTTTTAATCTGTTTACTGGGAGGCAGTTATAGTATAAGGTTCTACGCTCTTGTGGAGTTATCTACTGCATTATTTGGCAAACCTGCCTTTCAGAATCTCATTTGCAATGGACATGTCAAGGACGTATTATTGCCATGGTACAATCTCAAGTCTCTTGGCATTCGGGACGTATTCCTTGTCCAGAATGCAAAGAGACTTGAGATTGGAGGGTTTGCCGCTTTTGTCTCTGTTGATCAAGCCACTCTACAAAAGTCATCTAATGTGCTTGACCGGTGGATCAACTCGGCCACACAGAGTCTTGTGTATTTTGTCCGTCAGGACATGATTGGTTTTCAACTTTGTACGTTGCAGCCTTTACATGCGAATAATTTGTTTCCTATGTGGTATTGTGGATTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

174

Amino Acids

19.32

Weight (kDa)

7.67

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017234)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27140 FvH4_1g27141 FvH4_3g27323 FvH4_3g27500 FvH4_4g11000 FvH4_4g11041 FvH4_4g11064 FvH4_5g27942 FvH4_5g27942 FvH4_7g05920 FvH4_7g06405 FvH4_7g06406
malus_domestica	MD03G1160800.v1.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	61
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	405
AfaI	GTAC	2 cut(s)	260, 463
AflIII	ACRYGT	1 cut(s)	232
AgeI	ACCGGT	1 cut(s)	390
AgsI	TTSAA	1 cut(s)	455
Alw26I	GTCTC	4 cut(s)	105, 276, 307, 349
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	469
AsiGI	ACCGGT	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	481
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	4 cut(s)	105, 276, 307, 349
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	336, 470
BlsI	GCNGC	2 cut(s)	337, 471
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
BpuEI	CTTGAG	2 cut(s)	251, 338
BsaJI	CCNNGG	2 cut(s)	81, 254
BsaWI	WCCGGW	1 cut(s)	390
Bse118I	RCCGGY	1 cut(s)	390
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	2 cut(s)	114, 232
BseDI	CCNNGG	2 cut(s)	81, 254
BseMI	GCAATG	2 cut(s)	114, 232
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	481
BshFI	GGCC	1 cut(s)	407
BshTI	ACCGGT	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	299
BsmAI	GTCTC	4 cut(s)	105, 276, 307, 349
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	2 cut(s)	279, 310
BsnI	GGCC	1 cut(s)	407
Bsp143I	GATC	2 cut(s)	352, 396
Bsp19I	CCATGG	1 cut(s)	254
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	407
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	404
BsrDI	GCAATG	2 cut(s)	114, 232
BsrFI	RCCGGY	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	81, 254
BssMI	GATC	2 cut(s)	352, 396
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	15, 76
BstC8I	GCNNGC	1 cut(s)	43
BstDSI	CCRYGG	2 cut(s)	81, 254
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	355, 399
BstMAI	GTCTC	4 cut(s)	105, 276, 307, 349
BstMBI	GATC	2 cut(s)	352, 396
BstNSI	RCATGY	2 cut(s)	236, 482
BstV1I	GCAGC	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	407
BtgI	CCRYGG	2 cut(s)	81, 254
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	259, 462
CspAI	ACCGGT	1 cut(s)	390
CviAII	CATG	4 cut(s)	233, 255, 442, 479
CviJI	RGCY	3 cut(s)	359, 407, 472
CviKI_1	RGCY	3 cut(s)	359, 407, 472
CviQI	GTAC	2 cut(s)	259, 462
DpnI	GATC	2 cut(s)	354, 398
DpnII	GATC	2 cut(s)	352, 396
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	4 cut(s)	236, 258, 445, 482
FaiI	YATR	9 cut(s)	49, 51, 150, 155, 234, 256, 443, 480, 500
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	4 cut(s)	232, 254, 441, 478
FauNDI	CATATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	336, 470
Fsp4HI	GCNGC	2 cut(s)	336, 470
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	336, 470
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	391
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	4 cut(s)	236, 258, 445, 482
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	214, 415
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	62, 134
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	4 cut(s)	18, 284, 301, 437
Hpy8I	GTNNAC	2 cut(s)	62, 134
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	15, 76
HpyCH4IV	ACGT	3 cut(s)	243, 288, 464
HpyCH4V	TGCA	4 cut(s)	188, 225, 308, 469
HpySE526I	ACGT	3 cut(s)	243, 288, 464
Hsp92II	CATG	4 cut(s)	236, 258, 445, 482
HspAI	GCGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	352, 396
LpnPI	CCDG	6 cut(s)	27, 122, 216, 314, 404, 422
Lsp1109I	GCAGC	1 cut(s)	481
MaeII	ACGT	3 cut(s)	243, 288, 464
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	354, 398
MboI	GATC	2 cut(s)	352, 396
MluCI	AATT	2 cut(s)	487, 517
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	2 cut(s)	134, 320
MseI	TTAA	2 cut(s)	125, 515
MspI	CCGG	1 cut(s)	391
Mva1269I	GAATGC	2 cut(s)	279, 310
NcoI	CCATGG	1 cut(s)	254
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	2 cut(s)	352, 396
NlaIII	CATG	4 cut(s)	236, 258, 445, 482
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	4
NspI	RCATGY	2 cut(s)	236, 482
PciI	ACATGT	1 cut(s)	232
PctI	GAATGC	2 cut(s)	279, 310
PfeI	GAWTC	1 cut(s)	214
PinAI	ACCGGT	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	337, 471
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PscI	ACATGT	1 cut(s)	232
RsaI	GTAC	2 cut(s)	260, 463
RsaNI	GTAC	2 cut(s)	259, 462
SaqAI	TTAA	2 cut(s)	125, 515
SatI	GCNGC	2 cut(s)	336, 470
Sau3AI	GATC	2 cut(s)	352, 396
SchI	GAGTC	1 cut(s)	424
SetI	ASST	5 cut(s)	161, 205, 246, 291, 467
SmlI	CTYRAG	2 cut(s)	266, 317
SmoI	CTYRAG	2 cut(s)	266, 317
Sse9I	AATT	2 cut(s)	487, 517
SsiI	CCGC	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	15, 76
TaiI	ACGT	3 cut(s)	246, 291, 467
TasI	AATT	2 cut(s)	487, 517
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	125, 515
Tru9I	TTAA	2 cut(s)	125, 515
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	4
TspGWI	ACGGA	3 cut(s)	23, 70, 422
XceI	RCATGY	2 cut(s)	236, 482
XmiI	GTMKAC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.