Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0017234

Physical Location & Seq

Genomic Coordinates Forward (+)

19336676 .. 19337171

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1160800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAATCAAAATCCACCATTTAATCGTTATTATTATTTTTTTTTTTTTTTTAGCGAATTATTTTTAATTTTTGAATATTTTTTACGAGGATTTGACACTGCCCATGCCGCTGCTAGGGCATATGATCGACCTGCGATCAAGTTCCGCGGAATTGAGGCTGATATTAATTTCAGTGTCAGTGATTATAAGGATGATATTAAGCAGATGCGTAATTTTACAAAGGAAGAGTTTGTGCATATACTGCGGCGCCAGAGTACCGGGTATATGTTTTTCAAGATGGTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

96

Amino Acids

11.66

Weight (kDa)

8.96

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017234)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27140 FvH4_1g27141 FvH4_3g27323 FvH4_3g27500 FvH4_4g11000 FvH4_4g11041 FvH4_4g11064 FvH4_5g27942 FvH4_5g27942 FvH4_7g05920 FvH4_7g06405 FvH4_7g06406
malus_domestica	MD03G1160800.v1.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	1 cut(s)	147
AciI	CCGC	4 cut(s)	108, 145, 147, 244
AcyI	GRCGYC	1 cut(s)	247
AfaI	GTAC	2 cut(s)	256, 282
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	74, 274
ApeKI	GCWGC	1 cut(s)	110
AseI	ATTAAT	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	259
BfaI	CTAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	250
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	108, 111, 245
BlsI	GCNGC	3 cut(s)	109, 112, 246
Bme1390I	CCNGG	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	124, 135
BspACI	CCGC	4 cut(s)	108, 145, 147, 244
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	248
BspMI	ACCTGC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	124, 135
BssNI	GRCGYC	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	2 cut(s)	127, 138
BstMBI	GATC	2 cut(s)	124, 135
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 116, 241
BstSCI	CCNGG	1 cut(s)	257
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	3 cut(s)	96, 178, 184
BveI	ACCTGC	1 cut(s)	139
CfoI	GCGC	1 cut(s)	249
Cfr42I	CCGCGG	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	255, 281
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	1 cut(s)	158
CviKI_1	RGCY	1 cut(s)	158
CviQI	GTAC	2 cut(s)	255, 281
DinI	GGCGCC	1 cut(s)	248
DpnI	GATC	2 cut(s)	126, 137
DpnII	GATC	2 cut(s)	124, 135
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EgeI	GGCGCC	1 cut(s)	248
EheI	GGCGCC	1 cut(s)	248
FaeI	CATG	1 cut(s)	107
FaiI	YATR	8 cut(s)	105, 121, 123, 186, 237, 239, 264, 266
FatI	CATG	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	121
Fnu4HI	GCNGC	3 cut(s)	108, 111, 245
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	108, 111, 245
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	3 cut(s)	108, 111, 245
HaeII	RGCGCY	1 cut(s)	250
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 116, 241
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	247
KasI	GGCGCC	1 cut(s)	246
KspI	CCGCGG	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	124, 135
LpnPI	CCDG	3 cut(s)	144, 263, 271
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	114
MalI	GATC	2 cut(s)	126, 137
MboI	GATC	2 cut(s)	124, 135
MboII	GAAGA	1 cut(s)	236
MluCI	AATT	5 cut(s)	56, 66, 150, 166, 211
Mly113I	GGCGCC	1 cut(s)	247
MnlI	CCTC	2 cut(s)	80, 148
MseI	TTAA	4 cut(s)	21, 65, 165, 198
MspA1I	CMGCKG	2 cut(s)	110, 147
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	107, 116, 241
NarI	GGCGCC	1 cut(s)	247
NciI	CCSGG	1 cut(s)	259
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	2 cut(s)	124, 135
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	109, 112, 246
PluTI	GGCGCC	1 cut(s)	250
PshBI	ATTAAT	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	248
RsaI	GTAC	2 cut(s)	256, 282
RsaNI	GTAC	2 cut(s)	255, 281
SacII	CCGCGG	1 cut(s)	148
SaqAI	TTAA	4 cut(s)	21, 65, 165, 198
SatI	GCNGC	3 cut(s)	108, 111, 245
Sau3AI	GATC	2 cut(s)	124, 135
ScrFI	CCNGG	1 cut(s)	259
SetI	ASST	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	195
SfoI	GGCGCC	1 cut(s)	248
Sfr303I	CCGCGG	1 cut(s)	148
SgeI	CNNG	9 cut(s)	98, 116, 126, 143, 151, 158, 262, 270, 271
SgrBI	CCGCGG	1 cut(s)	148
Sse9I	AATT	5 cut(s)	56, 66, 150, 166, 211
SsiI	CCGC	4 cut(s)	108, 145, 147, 244
SspDI	GGCGCC	1 cut(s)	246
SspI	AATATT	1 cut(s)	77
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	127
TasI	AATT	5 cut(s)	56, 66, 150, 166, 211
TauI	GCSGC	2 cut(s)	110, 247
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	21, 65, 165, 198
Tru9I	TTAA	4 cut(s)	21, 65, 165, 198
TscAI	CASTG	3 cut(s)	103, 178, 184
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	103, 178, 184
VspI	ATTAAT	1 cut(s)	165
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.