FvH4_4g11041
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017234
Physical Location & Seq
Forward (+)
14783307 .. 14783819
513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11041.t1

Sequence Viewer

Length: 264 bp
ATGCCGCCAAAGGTGAACTATACAAGGAACTCCAGAAGTGTAAATACTTTAGTGAAAGACGTGCAGCCACTTATGTTGCATCATTGGCCCGAGCACTTAATTCATCTAGATATCAAACCAGAAAACCTTCTCATTGGTCAACAGGGTGAACTCAAGATAGCAGATTTGGGGTGGTCAGTGCATACATTCAATCGCAGTCGGACCATGTGTGGCACTCTTGATTACCCCCCTCCTGAGATGGGTATGTTAAAAGACAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

88

Amino Acids

10.06

Weight (kDa)

8.85

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 27 - 80 1.5e-12 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 190
AjiI CACGTC 1 cut(s) 61
Alw21I GWGCWC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 87, 201
AsuHPI GGTGA 2 cut(s) 25, 158
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 28, 60
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 232
BfaI CTAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 5, 65
BlsI GCNGC 2 cut(s) 6, 66
Bme18I GGWCC 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 87, 201
BmsI GCATC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 83
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 239
BsnI GGCC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 96
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 88
BtrI CACGTC 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 183
Cfr13I GGNCC 2 cut(s) 87, 201
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 1 cut(s) 205
CviJI RGCY 2 cut(s) 67, 88
CviKI_1 RGCY 2 cut(s) 67, 88
DdeI CTNAG 1 cut(s) 234
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 89
EcoRV GATATC 1 cut(s) 112
FaeI CATG 1 cut(s) 208
FaiI YATR 5 cut(s) 21, 74, 183, 206, 245
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 5, 65
Fsp4HI GCNGC 2 cut(s) 5, 65
FspBI CTAG 1 cut(s) 107
GluI GCNGC 2 cut(s) 5, 65
GsuI CTGGAG 1 cut(s) 16
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 1 cut(s) 208
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HphI GGTGA 2 cut(s) 25, 158
Hpy166II GTNNAC 3 cut(s) 16, 140, 149
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 5 cut(s) 33, 107, 154, 218, 233
Hpy8I GTNNAC 3 cut(s) 16, 140, 149
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 64, 79, 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 1 cut(s) 208
LpnPI CCDG 4 cut(s) 46, 128, 132, 246
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 2 cut(s) 98, 248
MwoI GCNNNNNNNGC 1 cut(s) 85
NlaIII CATG 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 126
PkrI GCNGC 2 cut(s) 6, 66
PspPI GGNCC 2 cut(s) 87, 201
SaqAI TTAA 2 cut(s) 98, 248
SatI GCNGC 2 cut(s) 5, 65
Sau96I GGNCC 2 cut(s) 87, 201
SduI GDGCHC 1 cut(s) 96
SetI ASST 3 cut(s) 15, 63, 129
SfaNI GCATC 1 cut(s) 88
SinI GGWCC 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 99
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 107
TaiI ACGT 1 cut(s) 63
TasI AATT 1 cut(s) 99
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 98, 248
Tru9I TTAA 2 cut(s) 98, 248
TscAI CASTG 1 cut(s) 183
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 201
XbaI TCTAGA 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.