FvH4_4g11000
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017234
Physical Location & Seq
Forward (+)
14698900 .. 14704835
5936 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11000.t1

Sequence Viewer

Length: 339 bp
ATGCCGCCAAAGGTGAACTATACAAGGAACTCCAGAAGTGTAAATACTTTAGTGAAAGACGTGCAGCCAGTTATGTTGCATCATTGGCCCGAGCACTTAATTCATCTAGATATCAAACCAGAAAACCTTCTCATTGGTCAACAGGGTGAACTCAAGATAGCAGATTTGGGGTGGTCAGTGCATACATTCAATCGCAGTCGGACCTTTATCAGGTTTTCTTCCTATCTCCATTCTGAAGGAACCGGATATTTGGTTACAGACTTGCAGGCACCATTTGAGGCTCTAAGATGCATAAACTGCACGCAGGAAGCAAACGACGCATTAAGTATCAGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

113

Amino Acids

12.83

Weight (kDa)

6.57

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 15 - 66 1.1e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AciI CCGC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 190
AjiI CACGTC 1 cut(s) 61
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw21I GWGCWC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 87, 201
AsuHPI GGTGA 2 cut(s) 25, 158
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 201
BanI GGYRCC 1 cut(s) 268
BarI GAAGNNNNNNTAC 2 cut(s) 28, 60
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 76
BfaI CTAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 5, 65
BlsI GCNGC 2 cut(s) 6, 66
Bme18I GGWCC 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 87, 201
BmiI GGNNCC 2 cut(s) 241, 270
BmsI GCATC 2 cut(s) 88, 278
BpmI CTGGAG 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 76
BsgI GTGCAG 2 cut(s) 83, 283
BshFI GGCC 1 cut(s) 88
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 210
BsnI GGCC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 96
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 241, 270
BspT107I GGYRCC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 267, 302
BstDEI CTNAG 1 cut(s) 284
BstENI CCTNNNNNAGG 1 cut(s) 208
BstMWI GCNNNNNNNGC 3 cut(s) 85, 297, 317
BstV1I GCAGC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 88
BtrI CACGTC 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 267, 302
Cfr13I GGNCC 2 cut(s) 87, 201
CseI GACGC 1 cut(s) 326
CviJI RGCY 4 cut(s) 67, 88, 281, 333
CviKI_1 RGCY 4 cut(s) 67, 88, 281, 333
DdeI CTNAG 1 cut(s) 284
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 293
FaiI YATR 4 cut(s) 21, 74, 183, 293
Fnu4HI GCNGC 2 cut(s) 5, 65
Fsp4HI GCNGC 2 cut(s) 5, 65
FspBI CTAG 1 cut(s) 107
GluI GCNGC 2 cut(s) 5, 65
GsuI CTGGAG 1 cut(s) 16
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 243
HgaI GACGC 1 cut(s) 326
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 25, 158
Hpy166II GTNNAC 3 cut(s) 16, 140, 149
Hpy188I TCNGA 2 cut(s) 201, 235
Hpy188III TCNNGA 3 cut(s) 33, 107, 154
Hpy8I GTNNAC 3 cut(s) 16, 140, 149
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 137, 230
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 6 cut(s) 64, 79, 181, 265, 291, 300
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 297, 317
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 1 cut(s) 60
LpnPI CCDG 8 cut(s) 46, 81, 128, 132, 196, 251, 256, 290
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 2 cut(s) 88, 278
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 253
MboII GAAGA 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 1 cut(s) 271
Mph1103I ATGCAT 1 cut(s) 293
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 3 cut(s) 98, 323, 337
MspI CCGG 1 cut(s) 243
MwoI GCNNNNNNNGC 3 cut(s) 85, 297, 317
NlaIV GGNNCC 2 cut(s) 241, 270
NsiI ATGCAT 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 126
PkrI GCNGC 2 cut(s) 6, 66
PspN4I GGNNCC 2 cut(s) 241, 270
PspPI GGNCC 2 cut(s) 87, 201
SaqAI TTAA 3 cut(s) 98, 323, 337
SatI GCNGC 2 cut(s) 5, 65
Sau96I GGNCC 2 cut(s) 87, 201
SduI GDGCHC 1 cut(s) 96
SetI ASST 6 cut(s) 15, 63, 129, 206, 215, 335
SfaNI GCATC 2 cut(s) 88, 278
SinI GGWCC 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 99
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 107
TaiI ACGT 1 cut(s) 63
TasI AATT 1 cut(s) 99
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 3 cut(s) 98, 323, 337
Tru9I TTAA 3 cut(s) 98, 323, 337
TscAI CASTG 1 cut(s) 183
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 201
XagI CCTNNNNNAGG 1 cut(s) 208
XbaI TCTAGA 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.