FvH4_1g27720

UTP-glucose-1-phosphate uridylyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
19333148 .. 19340422
7275 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27720.t3

Sequence Viewer

Length: 1416 bp
ATGGCCGCAGCTGCCGCTGATCAGATCTCCAAGCTCAAATCTGAGGTCGCCGCTCTCAGCCAGATCAGCGAGAATGAGAAGAACGGATTCATCAACCTCGTCTCTCGCTATCTCAGTGGAACGGAAGCGACGCATGTGGATTGGAGTAAGATCCAGACTCCTACTGAGGAGGTTGTGGTTCCTTATGACTCCTTAGCACCTACTCCCGAAGATCCTGCTGAAACCAAGAAGCTTCTGGACAAACTTGTTGTGCTGAAGCTTAATGGAGGTCTTGGAACAACAATGGGTTGTACTGGTCCCAAGTCAGTCATTGAAGTTCGAAATGGGTTGACATTTCTGGACTTGATTGTCATCCAGATTGAGACTCTCAATAACAAATATGGATGCAATGTTCCTCTGCTTTTAATGAACTCATTCAACACTCATGACGACACATTTAAGATCGTTGAGAGATACACCAAGTCAAATGTTCAAATTCATACTTTTAACCAGAGTCAGTATCCTCGTTTGGTTGTTGAAGATAATTCGCCACTTCCATCCAAAGGACAGACTGGCAAGGATGGATGGTATCCACCCGGCCATGGTGATGTGTTCCCATCCTTAAGAAACAGTGGTAAACTGGATATGTTGTTGTCACAGGGAAAGGAGTACGTGTTTGTTTCTAACTCGGACAACTTGGGTGCTGTTGTGGACTTGAAAATTTTGAATCATTTGGTCCAGAAAAAGAATGAGTACTGCATGGAGGTGACACCAAAAACATTGGCCGATGTGAAGGGTGGCACTCTAATCTCTTATGAGGGAAGGACTCAGCTCCTGGAAATCGCTCAAGTCCATGATCAACATGTCAATGAATTCAAGTCAATAGAGAAGTTCAAAATTTTCAACACAAATAATTTGTGGGTGAACTTGAGCGCGATTAAACGTCTTGTGGAAGCTGATGCACTTAAGATGGAGATTATCCCAAACCCAAAGGAAGTGGAAGGAATCAAAGTTATGCAGCTAGAAACTGCAGCGGGTGCGGCAATCAGGTTCTTTAATCATGCTATTGGTATCAATGTACCCCGGTCTCGGTTCCTCCCTGTGAAGGCAACTTCAGATTTGCTTCTTGTTCAGTCTGACCTCTATACTGTACAAGATGGCTCTGTTACCCGTAACCCAGCAAGGAAAAATCCTGCAAATCCTTCTATTGAACTTGGGCCTGAGTTTAAGAAGGTTGCCAATTTCTTGAGTCGGTTCAAGTCAATCCCCAGCATCATTGAGCTTGATAGCCTTAAGGTGTCTGGTGATGTGTGGTTCGGTGCTGACATTGTTCTCAAGGGCAAAGTAGCTATCACAGCGAAACCTGGGGTGAAGTTGGAAATTCCTGACAAAGCTGTGCTGGAGAACAAGGATATCAATGGTCCTGAGGATCTCTAA

Protein Analysis

472

Amino Acids

51.87

Weight (kDa)

6.3

Isoelectric Point (pI)

26.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGP PF01704 56 - 467 2.2e-183 UTP--glucose-1-phosphate uridylyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccBSI CCGCTC 1 cut(s) 53
AccII CGCG 1 cut(s) 914
AciI CCGC 5 cut(s) 6, 15, 51, 1013, 1019
AclWI GGATC 2 cut(s) 145, 206
AcoI YGGCCR 3 cut(s) 3, 577, 762
AcsI RAATTY 5 cut(s) 474, 699, 851, 876, 1359
AcuI CTGAAG 2 cut(s) 275, 1077
AfaI GTAC 5 cut(s) 292, 650, 734, 1059, 1131
AfiI CCNNNNNNNGG 4 cut(s) 542, 581, 1068, 1084
AflII CTTAAG 3 cut(s) 601, 944, 1271
AflIII ACRYGT 2 cut(s) 651, 841
AjnI CCWGG 2 cut(s) 813, 1342
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
Alw26I GTCTC 3 cut(s) 106, 356, 1071
AlwI GGATC 2 cut(s) 145, 206
AlwNI CAGNNNCTG 1 cut(s) 814
AoxI GGCC 4 cut(s) 3, 577, 762, 1196
ApeKI GCWGC 4 cut(s) 8, 11, 997, 1010
ApoI RAATTY 5 cut(s) 474, 699, 851, 876, 1359
ArsI GACNNNNNNTTYG 2 cut(s) 30, 62
Asp700I GAANNNNTTC 2 cut(s) 86, 413
AspLEI GCGC 1 cut(s) 914
AspS9I GGNCC 4 cut(s) 296, 715, 1196, 1400
AsuC2I CCSGG 2 cut(s) 576, 1063
AsuHPI GGTGA 5 cut(s) 596, 757, 913, 1295, 1360
AsuII TTCGAA 1 cut(s) 319
AvaII GGWCC 3 cut(s) 296, 715, 1400
AxyI CCTNAGG 1 cut(s) 1404
BbvI GCAGC 3 cut(s) 20, 1009, 1022
BccI CCATC 6 cut(s) 544, 554, 558, 604, 943, 1130
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 2 cut(s) 815, 1344
BciVI GTATCC 2 cut(s) 510, 579
BclI TGATCA 2 cut(s) 19, 835
BcnI CCSGG 2 cut(s) 576, 1063
BcoDI GTCTC 3 cut(s) 106, 356, 1071
BfaI CTAG 1 cut(s) 1001
BfmI CTRYAG 1 cut(s) 1008
BfrI CTTAAG 3 cut(s) 601, 944, 1271
BfuI GTATCC 2 cut(s) 510, 579
BglII AGATCT 1 cut(s) 24
BisI GCNGC 8 cut(s) 6, 9, 12, 15, 51, 998, 1011, 1020
BlsI GCNGC 8 cut(s) 7, 10, 13, 16, 52, 999, 1012, 1021
BmcAI AGTACT 1 cut(s) 734
Bme1390I CCNGG 4 cut(s) 576, 815, 1063, 1344
Bme18I GGWCC 3 cut(s) 296, 715, 1400
BmgT120I GGNCC 4 cut(s) 296, 715, 1196, 1400
BmiI GGNNCC 3 cut(s) 180, 298, 1073
BmrFI CCNGG 4 cut(s) 576, 815, 1063, 1344
BmsI GCATC 3 cut(s) 374, 928, 1260
BpmI CTGGAG 1 cut(s) 1400
Bpu10I CCTNAGC 1 cut(s) 193
Bpu14I TTCGAA 1 cut(s) 319
BpuEI CTTGAG 4 cut(s) 810, 928, 1246, 1298
BpuMI CCSGG 2 cut(s) 576, 1063
BsaAI YACGTR 1 cut(s) 652
BsaBI GATNNNNATC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 1071
BsaJI CCNNGG 3 cut(s) 580, 1061, 1343
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 4 cut(s) 542, 581, 1068, 1084
Bse1I ACTGG 3 cut(s) 298, 556, 624
Bse21I CCTNAGG 1 cut(s) 1404
Bse3DI GCAATG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 2 cut(s) 815, 1344
BseDI CCNNGG 3 cut(s) 580, 1061, 1343
BseGI GGATG 6 cut(s) 351, 389, 536, 565, 569, 596
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 4 cut(s) 542, 581, 1068, 1084
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 7 cut(s) 33, 70, 127, 156, 821, 1191, 1395
BseNI ACTGG 3 cut(s) 298, 556, 624
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 20, 1009, 1022
BseYI CCCAGC 2 cut(s) 1156, 1247
Bsh1236I CGCG 1 cut(s) 914
BshFI GGCC 4 cut(s) 5, 579, 764, 1198
BsiSI CCGG 2 cut(s) 576, 1063
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 4 cut(s) 542, 581, 1068, 1084
BsmAI GTCTC 3 cut(s) 106, 356, 1071
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 4 cut(s) 5, 579, 764, 1198
Bso31I GGTCTC 1 cut(s) 1071
Bsp119I TTCGAA 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 1129
Bsp143I GATC 8 cut(s) 19, 24, 63, 150, 211, 441, 835, 1408
Bsp19I CCATGG 1 cut(s) 580
BspACI CCGC 5 cut(s) 6, 15, 51, 1013, 1019
BspANI GGCC 4 cut(s) 5, 579, 764, 1198
BspCNI CTCAG 7 cut(s) 34, 69, 126, 157, 820, 1192, 1396
BspFNI CGCG 1 cut(s) 914
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 3 cut(s) 180, 298, 1073
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 2 cut(s) 145, 206
BspT104I TTCGAA 1 cut(s) 319
BspTI CTTAAG 3 cut(s) 601, 944, 1271
BspTNI GGTCTC 1 cut(s) 1071
BsrBI CCGCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 394
BsrGI TGTACA 1 cut(s) 1129
BsrI ACTGG 3 cut(s) 298, 556, 624
BssECI CCNNGG 3 cut(s) 580, 1061, 1343
BssMI GATC 8 cut(s) 19, 24, 63, 150, 211, 441, 835, 1408
BssT1I CCWWGG 1 cut(s) 580
Bst2UI CCWGG 2 cut(s) 815, 1344
Bst4CI ACNGT 2 cut(s) 611, 1129
BstAFI CTTAAG 3 cut(s) 601, 944, 1271
BstAPI GCANNNNNTGC 1 cut(s) 1016
BstAUI TGTACA 1 cut(s) 1129
BstBAI YACGTR 1 cut(s) 652
BstBI TTCGAA 1 cut(s) 319
BstDEI CTNAG 8 cut(s) 42, 56, 113, 165, 193, 807, 1200, 1404
BstDSI CCRYGG 1 cut(s) 580
BstF5I GGATG 6 cut(s) 351, 389, 536, 565, 569, 596
BstFNI CGCG 1 cut(s) 914
BstHHI GCGC 1 cut(s) 914
BstKTI GATC 8 cut(s) 22, 27, 66, 153, 214, 444, 838, 1411
BstMAI GTCTC 3 cut(s) 106, 356, 1071
BstMBI GATC 8 cut(s) 19, 24, 63, 150, 211, 441, 835, 1408
BstMWI GCNNNNNNNGC 6 cut(s) 11, 14, 66, 1016, 1019, 1334
BstNI CCWGG 2 cut(s) 815, 1344
BstNSI RCATGY 2 cut(s) 137, 845
BstSCI CCNGG 4 cut(s) 574, 813, 1061, 1342
BstSFI CTRYAG 1 cut(s) 1008
BstUI CGCG 1 cut(s) 914
BstV1I GCAGC 3 cut(s) 20, 1009, 1022
BstX2I RGATCY 4 cut(s) 24, 150, 211, 1408
BstYI RGATCY 4 cut(s) 24, 150, 211, 1408
Bsu36I CCTNAGG 1 cut(s) 1404
BsuI GTATCC 2 cut(s) 510, 579
BsuRI GGCC 4 cut(s) 5, 579, 764, 1198
BtgI CCRYGG 1 cut(s) 580
BtsCI GGATG 6 cut(s) 351, 389, 536, 565, 569, 596
BtsIMutI CAGTG 2 cut(s) 121, 616
CaiI CAGNNNCTG 1 cut(s) 814
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 914
Cfr13I GGNCC 4 cut(s) 296, 715, 1196, 1400
CseI GACGC 1 cut(s) 139
Csp6I GTAC 5 cut(s) 291, 649, 733, 1058, 1130
CspCI CAANNNNNGTGG 2 cut(s) 957, 992
CviAII CATG 7 cut(s) 134, 425, 581, 739, 833, 842, 1040
CviQI GTAC 5 cut(s) 291, 649, 733, 1058, 1130
DdeI CTNAG 8 cut(s) 42, 56, 113, 165, 193, 807, 1200, 1404
DpnI GATC 8 cut(s) 21, 26, 65, 152, 213, 443, 837, 1410
DpnII GATC 8 cut(s) 19, 24, 63, 150, 211, 441, 835, 1408
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 3 cut(s) 3, 577, 762
Eco130I CCWWGG 1 cut(s) 580
Eco31I GGTCTC 1 cut(s) 1071
Eco32I GATATC 1 cut(s) 1393
Eco47I GGWCC 3 cut(s) 296, 715, 1400
Eco57I CTGAAG 2 cut(s) 275, 1077
Eco81I CCTNAGG 1 cut(s) 1404
EcoRI GAATTC 1 cut(s) 851
EcoRII CCWGG 2 cut(s) 813, 1342
EcoRV GATATC 1 cut(s) 1393
EcoT14I CCWWGG 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 580
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 7 cut(s) 137, 428, 584, 742, 836, 845, 1043
FaqI GGGAC 1 cut(s) 282
FatI CATG 7 cut(s) 133, 424, 580, 738, 832, 841, 1039
FauI CCCGC 1 cut(s) 1006
FbaI TGATCA 2 cut(s) 19, 835
Fnu4HI GCNGC 8 cut(s) 6, 9, 12, 15, 51, 998, 1011, 1020
FokI GGATG 6 cut(s) 338, 396, 523, 572, 576, 583
Fsp4HI GCNGC 8 cut(s) 6, 9, 12, 15, 51, 998, 1011, 1020
FspBI CTAG 1 cut(s) 1001
GlaI GCGC 1 cut(s) 913
GluI GCNGC 8 cut(s) 6, 9, 12, 15, 51, 998, 1011, 1020
GsaI CCCAGC 2 cut(s) 1160, 1251
GsuI CTGGAG 1 cut(s) 1400
HaeIII GGCC 4 cut(s) 5, 579, 764, 1198
HapII CCGG 2 cut(s) 576, 1063
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 914
Hin1II CATG 7 cut(s) 137, 428, 584, 742, 836, 845, 1043
Hin6I GCGC 1 cut(s) 912
HinP1I GCGC 1 cut(s) 912
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HindIII AAGCTT 2 cut(s) 230, 257
HinfI GANTC 9 cut(s) 87, 157, 188, 364, 493, 706, 805, 984, 1228
HpaII CCGG 2 cut(s) 576, 1063
HphI GGTGA 5 cut(s) 596, 757, 913, 1295, 1360
Hpy166II GTNNAC 4 cut(s) 330, 617, 691, 904
Hpy188I TCNGA 5 cut(s) 24, 43, 670, 1096, 1117
Hpy8I GTNNAC 4 cut(s) 330, 617, 691, 904
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 6 cut(s) 766, 795, 974, 1078, 1191, 1204
HpyCH4III ACNGT 2 cut(s) 611, 1129
HpyCH4IV ACGT 2 cut(s) 651, 922
HpyCH4V TGCA 6 cut(s) 387, 738, 941, 997, 1010, 1175
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 14, 66, 1016, 1019, 1334
HpyF3I CTNAG 8 cut(s) 42, 56, 113, 165, 193, 807, 1200, 1404
HpySE526I ACGT 2 cut(s) 651, 922
Hsp92II CATG 7 cut(s) 137, 428, 584, 742, 836, 845, 1043
HspAI GCGC 1 cut(s) 912
Ksp22I TGATCA 2 cut(s) 19, 835
Kzo9I GATC 8 cut(s) 19, 24, 63, 150, 211, 441, 835, 1408
LmnI GCTCC 1 cut(s) 816
Lsp1109I GCAGC 3 cut(s) 20, 1009, 1022
LweI GCATC 3 cut(s) 374, 928, 1260
MaeI CTAG 1 cut(s) 1001
MaeII ACGT 2 cut(s) 651, 922
MaeIII GTNAC 4 cut(s) 633, 745, 1144, 1151
MalI GATC 8 cut(s) 21, 26, 65, 152, 213, 443, 837, 1410
MbiI CCGCTC 1 cut(s) 53
MboI GATC 8 cut(s) 19, 24, 63, 150, 211, 441, 835, 1408
MboII GAAGA 3 cut(s) 91, 221, 530
MflI RGATCY 4 cut(s) 24, 150, 211, 1408
MluCI AATT 8 cut(s) 474, 523, 699, 851, 876, 892, 1219, 1359
MlyI GAGTC 6 cut(s) 151, 182, 358, 502, 799, 1237
MmeI TCCRAC 1 cut(s) 1335
MroXI GAANNNNTTC 2 cut(s) 86, 413
MslI CAYNNNNRTG 3 cut(s) 585, 743, 846
MspA1I CMGCKG 3 cut(s) 11, 17, 1013
MspCI CTTAAG 3 cut(s) 601, 944, 1271
MspI CCGG 2 cut(s) 576, 1063
MspR9I CCNGG 4 cut(s) 576, 815, 1063, 1344
MvaI CCWGG 2 cut(s) 815, 1344
MvnI CGCG 1 cut(s) 914
MwoI GCNNNNNNNGC 6 cut(s) 11, 14, 66, 1016, 1019, 1334
NciI CCSGG 2 cut(s) 576, 1063
NcoI CCATGG 1 cut(s) 580
NdeII GATC 8 cut(s) 19, 24, 63, 150, 211, 441, 835, 1408
NlaIII CATG 7 cut(s) 137, 428, 584, 742, 836, 845, 1043
NlaIV GGNNCC 3 cut(s) 180, 298, 1073
NmuCI GTSAC 2 cut(s) 633, 745
NspI RCATGY 2 cut(s) 137, 845
NspV TTCGAA 1 cut(s) 319
PagI TCATGA 1 cut(s) 424
PciI ACATGT 1 cut(s) 841
PdmI GAANNNNTTC 2 cut(s) 86, 413
PfeI GAWTC 3 cut(s) 87, 706, 984
PfoI TCCNGGA 1 cut(s) 813
PkrI GCNGC 8 cut(s) 7, 10, 13, 16, 52, 999, 1012, 1021
PleI GAGTC 6 cut(s) 151, 182, 358, 501, 799, 1236
PpsI GAGTC 6 cut(s) 151, 182, 358, 501, 799, 1236
Ppu21I YACGTR 1 cut(s) 652
PscI ACATGT 1 cut(s) 841
Psp6I CCWGG 2 cut(s) 813, 1342
PspFI CCCAGC 2 cut(s) 1156, 1247
PspGI CCWGG 2 cut(s) 813, 1342
PspN4I GGNNCC 3 cut(s) 180, 298, 1073
PspPI GGNCC 4 cut(s) 296, 715, 1196, 1400
PstI CTGCAG 1 cut(s) 1012
PstNI CAGNNNCTG 1 cut(s) 814
PsuI RGATCY 4 cut(s) 24, 150, 211, 1408
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 5 cut(s) 292, 650, 734, 1059, 1131
RsaNI GTAC 5 cut(s) 291, 649, 733, 1058, 1130
RseI CAYNNNNRTG 3 cut(s) 585, 743, 846
SatI GCNGC 8 cut(s) 6, 9, 12, 15, 51, 998, 1011, 1020
Sau3AI GATC 8 cut(s) 19, 24, 63, 150, 211, 441, 835, 1408
Sau96I GGNCC 4 cut(s) 296, 715, 1196, 1400
ScaI AGTACT 1 cut(s) 734
SchI GAGTC 6 cut(s) 151, 182, 358, 502, 799, 1237
ScrFI CCNGG 4 cut(s) 576, 815, 1063, 1344
SfaNI GCATC 3 cut(s) 374, 928, 1260
SfcI CTRYAG 1 cut(s) 1008
SfuI TTCGAA 1 cut(s) 319
SinI GGWCC 3 cut(s) 296, 715, 1400
SmiMI CAYNNNNRTG 3 cut(s) 585, 743, 846
SmlI CTYRAG 7 cut(s) 601, 825, 907, 944, 1225, 1271, 1313
SmoI CTYRAG 7 cut(s) 601, 825, 907, 944, 1225, 1271, 1313
Sse9I AATT 8 cut(s) 474, 523, 699, 851, 876, 892, 1219, 1359
SsiI CCGC 5 cut(s) 6, 15, 51, 1013, 1019
SspMI CTAG 1 cut(s) 1001
StyD4I CCNGG 4 cut(s) 574, 813, 1061, 1342
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 2 cut(s) 611, 1129
TaiI ACGT 2 cut(s) 654, 925
TaqI TCGA 1 cut(s) 319
TasI AATT 8 cut(s) 474, 523, 699, 851, 876, 892, 1219, 1359
TatI WGTACW 3 cut(s) 290, 732, 1129
TauI GCSGC 4 cut(s) 8, 17, 53, 1022
TfiI GAWTC 3 cut(s) 87, 706, 984
TscAI CASTG 2 cut(s) 121, 616
TseFI GTSAC 2 cut(s) 633, 745
TseI GCWGC 4 cut(s) 8, 11, 997, 1010
Tsp45I GTSAC 2 cut(s) 633, 745
TspDTI ATGAA 4 cut(s) 79, 422, 467, 864
TspGWI ACGGA 2 cut(s) 99, 137
TspRI CASTG 2 cut(s) 121, 616
Vha464I CTTAAG 3 cut(s) 601, 944, 1271
VpaK11BI GGWCC 3 cut(s) 296, 715, 1400
XapI RAATTY 5 cut(s) 474, 699, 851, 876, 1359
XceI RCATGY 2 cut(s) 137, 845
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XmnI GAANNNNTTC 2 cut(s) 86, 413
XspI CTAG 1 cut(s) 1001
ZrmI AGTACT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.