Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006292

Physical Location & Seq

Genomic Coordinates Reverse (-)

22564571 .. 22565173

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0241900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGCTATCAGGCTAGAGTGGGTCTGGATAGTTTACAGAGGTGGCAGCCTCCTAGATGTGGCCAGCTGAAGGCCGGTCTAGGTTTGGTGGTAGAACGAAGACTAAGGAATGTAGTGGTGGAGTCTGATTACTTGGAAGCTATTCATCTACTTAATTCAAAAGAGAGTTGTTTGGCCCCTGAAGGAGGACTTGTTGAAGACATTCAAAGTACCATGGCTCTTCTCAATATTACTACCATCTATCATGTTCGACGTGAGGGGAATATGGCTGCTCGTGCAATTGCGAATTATGTAGCTCAAAATAATGGGCGTTTAGTGTGGTTAGAGGTTGGGCCTGATTGGCTCATGTCACTTATCTTTAATGATAAGACTTTAGCCGGGTTATCAGTTAGGGAGTTGAGTATTTCTTCGACTTCGGATTCTAGGGAGGTTGGAGAGTATACATTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005976 GO:0005977 GO:0005984 GO:0005985 GO:0006011 GO:0006073 GO:0006091 GO:0006112 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0009225 GO:0009267 GO:0009311 GO:0009555 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0010941 GO:0010942 GO:0015980 GO:0016020 GO:0016036 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042545 GO:0042594 GO:0042995 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0046686 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0051748 GO:0052386 GO:0052543 GO:0052545 GO:0055086 GO:0055114 GO:0065007 GO:0070569 GO:0070727 GO:0071496 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0120025 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

UDPGP

Protein Analysis

150

Amino Acids

16.66

Weight (kDa)

5.69

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	23 - 97	3.3e-09	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03250 AT3G03250 AT3G03250 AT5G17310 AT5G17310 AT5G17310 AT5G17310 AT5G17310 AT5G17310
fragaria_vesca	FvH4_1g27720 FvH4_1g27720 FvH4_1g27720
malus_domestica	MD09G1278300.v1.1
prunus_persica	Prupe.3G015000_v2.0.a1 Prupe.3G015000_v2.0.a1 Prupe.3G015000_v2.0.a1
pyrus_communis	pycom09g18740
rosa_chinensis	RchiOBHm_Chr3g0488851
rosa_laevigata	RLG00000022918
rosa_multiflora	Rmu_sc0001208.1_g000039
rosa_roxburghii	Rroxscaffold_6G00393820
rosa_rugosa	Rorug03G0241900 Rorug03G0242000
rosa_samantha	Rh3AG290000 Rh3BG327200 Rh3CG324500
rosa_wichuraiana	Rw3G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	440
AcoI	YGGCCR	1 cut(s)	61
AcuI	CTGAAG	2 cut(s)	89, 201
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	3 cut(s)	59, 70, 185
AgsI	TTSAA	3 cut(s)	159, 197, 206
AjiI	CACGTC	1 cut(s)	254
AluBI	AGCT	3 cut(s)	67, 140, 296
AluI	AGCT	3 cut(s)	67, 140, 296
AoxI	GGCC	4 cut(s)	61, 72, 174, 332
ApeKI	GCWGC	2 cut(s)	46, 269
Asp700I	GAANNNNTTC	2 cut(s)	141, 201
AspS9I	GGNCC	2 cut(s)	175, 332
AsuC2I	CCSGG	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	63
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	2 cut(s)	106, 204
BbvI	GCAGC	2 cut(s)	58, 256
BccI	CCATC	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	379
BfaI	CTAG	4 cut(s)	15, 54, 80, 423
BglI	GCCNNNNNGGC	1 cut(s)	340
BisI	GCNGC	2 cut(s)	47, 270
BlsI	GCNGC	2 cut(s)	48, 271
Bme1390I	CCNGG	1 cut(s)	379
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	175, 332
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	379
BpiI	GAAGAC	2 cut(s)	106, 204
BpuMI	CCSGG	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 70, 185
Bse118I	RCCGGY	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	3 cut(s)	59, 70, 185
BseXI	GCAGC	2 cut(s)	58, 256
BshFI	GGCC	4 cut(s)	63, 74, 176, 334
BsiSI	CCGG	2 cut(s)	75, 378
BslI	CCNNNNNNNGG	3 cut(s)	59, 70, 185
BsnI	GGCC	4 cut(s)	63, 74, 176, 334
Bsp19I	CCATGG	1 cut(s)	213
BspANI	GGCC	4 cut(s)	63, 74, 176, 334
BspLI	GGNNCC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	213
BssNAI	GTATAC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	213
Bst1107I	GTATAC	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 340
BstSCI	CCNGG	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	58, 256
BstV2I	GAAGAC	2 cut(s)	106, 204
BstZ17I	GTATAC	1 cut(s)	441
BsuRI	GGCC	4 cut(s)	63, 74, 176, 334
BtgI	CCRYGG	1 cut(s)	213
BtrI	CACGTC	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	175, 332
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	3 cut(s)	214, 245, 346
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	213
Eco57I	CTGAAG	2 cut(s)	89, 201
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	217, 248, 349
FaiI	YATR	6 cut(s)	215, 246, 266, 291, 347, 441
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FatI	CATG	3 cut(s)	213, 244, 345
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	2 cut(s)	47, 270
Fsp4HI	GCNGC	2 cut(s)	47, 270
FspBI	CTAG	4 cut(s)	15, 54, 80, 423
GluI	GCNGC	2 cut(s)	47, 270
HaeIII	GGCC	4 cut(s)	63, 74, 176, 334
HapII	CCGG	2 cut(s)	75, 378
Hin1II	CATG	3 cut(s)	217, 248, 349
HinfI	GANTC	2 cut(s)	122, 419
HpaII	CCGG	2 cut(s)	75, 378
Hpy166II	GTNNAC	2 cut(s)	35, 441
Hpy188I	TCNGA	2 cut(s)	127, 418
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	35, 441
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	2 cut(s)	64, 176
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 340
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	3 cut(s)	217, 248, 349
LguI	GCTCTTC	1 cut(s)	225
LpnPI	CCDG	6 cut(s)	11, 77, 88, 192, 348, 391
Lsp1109I	GCAGC	2 cut(s)	58, 256
MaeI	CTAG	4 cut(s)	15, 54, 80, 423
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	348
MboII	GAAGA	4 cut(s)	111, 209, 212, 399
MfeI	CAATTG	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	3 cut(s)	154, 279, 286
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	6 cut(s)	33, 60, 179, 250, 319, 421
Mox20I	TGGCCA	1 cut(s)	63
MroXI	GAANNNNTTC	2 cut(s)	141, 201
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	3 cut(s)	153, 360, 451
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	2 cut(s)	75, 378
MspR9I	CCNGG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	275, 340
NciI	CCSGG	1 cut(s)	379
NcoI	CCATGG	1 cut(s)	213
NlaIII	CATG	3 cut(s)	217, 248, 349
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	2 cut(s)	141, 201
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	48, 271
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	175, 332
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	153, 360, 451
SatI	GCNGC	2 cut(s)	47, 270
Sau96I	GGNCC	2 cut(s)	175, 332
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	379
SetI	ASST	8 cut(s)	44, 69, 85, 142, 256, 298, 330, 432
Sse9I	AATT	3 cut(s)	154, 279, 286
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	4 cut(s)	15, 54, 80, 423
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	213
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	250, 410
TasI	AATT	3 cut(s)	154, 279, 286
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	3 cut(s)	153, 360, 451
Tru9I	TTAA	3 cut(s)	153, 360, 451
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	2 cut(s)	46, 269
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	134
XagI	CCTNNNNNAGG	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	440
XmnI	GAANNNNTTC	2 cut(s)	141, 201
XspI	CTAG	4 cut(s)	15, 54, 80, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.