Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006292

Physical Location & Seq

Genomic Coordinates Forward (+)

22571247 .. 22572292

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0242000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCAGTCAATCAAGGAAGCCGCGGCCAACGTAGCTGCCTCTGCCAAGTCTGGTATGGAGAAGACCAAGGCCACCATGCAGGAGAAGATGGAGAAGATGAAGGCGCAGGACCCGATCCAAAAGGACATGGCAACTCAAAAGAAAGAAGGGCGGATTGCCGAGGCTGAGCAGCACAAGCGTGAGGCCATGGATCACAACACCGCCGCTAAACATGGAACAGCTCCGGCTAGATCCACAGGCTACGGCACTGAGCCGACGGGATACAGCACCAGCGGGGCTGGAACAGCCACATATCCAACCACCGGGGCTACTGGGCAGCAAACCGGGTTTAATCAGATGTCCGCGCTGCCCGGACATGGGACCGGGGAACCCGCTGGCCAGGTGGTTGAGGGTGTTGCCACCGCACATCCGATCGGAACCAGCACCGGCACCGGGAGGACTACGGCCCATAACACCCATGTGGGTGGTAATGCCCCCGGCTATGGGACTGGCGGGACTTATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005976 GO:0005977 GO:0005984 GO:0005985 GO:0006011 GO:0006073 GO:0006091 GO:0006112 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0009225 GO:0009267 GO:0009311 GO:0009555 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0010941 GO:0010942 GO:0015980 GO:0016020 GO:0016036 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042545 GO:0042594 GO:0042995 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0046686 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0051748 GO:0052386 GO:0052543 GO:0052545 GO:0055086 GO:0055114 GO:0065007 GO:0070569 GO:0070727 GO:0071496 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0090406 GO:0120025 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

UDPGP

Protein Analysis

168

Amino Acids

17.12

Weight (kDa)

8.81

Isoelectric Point (pI)

24.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_1	PF03760	1 - 70	7.9e-20	Late embryogenesis abundant (LEA) group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03250 AT3G03250 AT3G03250 AT5G17310 AT5G17310 AT5G17310 AT5G17310 AT5G17310 AT5G17310
fragaria_vesca	FvH4_1g27720 FvH4_1g27720 FvH4_1g27720
malus_domestica	MD09G1278300.v1.1
prunus_persica	Prupe.3G015000_v2.0.a1 Prupe.3G015000_v2.0.a1 Prupe.3G015000_v2.0.a1
pyrus_communis	pycom09g18740
rosa_chinensis	RchiOBHm_Chr3g0488851
rosa_laevigata	RLG00000022918
rosa_multiflora	Rmu_sc0001208.1_g000039
rosa_roxburghii	Rroxscaffold_6G00393820
rosa_rugosa	Rorug03G0241900 Rorug03G0242000
rosa_samantha	Rh3AG290000 Rh3BG327200 Rh3CG324500
rosa_wichuraiana	Rw3G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AccII	CGCG	2 cut(s)	23, 344
AclWI	GGATC	3 cut(s)	109, 198, 225
AcoI	YGGCCR	2 cut(s)	24, 376
AfiI	CCNNNNNNNGG	6 cut(s)	302, 356, 357, 432, 482, 483
AjnI	CCWGG	1 cut(s)	378
AleI	CACNNNNGTG	2 cut(s)	177, 458
AluBI	AGCT	2 cut(s)	35, 221
AluI	AGCT	2 cut(s)	35, 221
AlwI	GGATC	3 cut(s)	109, 198, 225
AoxI	GGCC	5 cut(s)	24, 69, 183, 376, 444
ApeKI	GCWGC	4 cut(s)	35, 169, 316, 346
AspLEI	GCGC	2 cut(s)	106, 346
AspS9I	GGNCC	3 cut(s)	109, 360, 445
AsuC2I	CCSGG	6 cut(s)	304, 325, 351, 364, 433, 477
AvaII	GGWCC	2 cut(s)	109, 360
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	4 cut(s)	22, 181, 328, 333
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	2 cut(s)	259, 459
BciT130I	CCWGG	1 cut(s)	380
BciVI	GTATCC	1 cut(s)	254
BcnI	CCSGG	6 cut(s)	304, 325, 351, 364, 433, 477
BfaI	CTAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	7 cut(s)	21, 24, 36, 170, 204, 317, 347
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	7 cut(s)	22, 25, 37, 171, 205, 318, 348
Bme1390I	CCNGG	7 cut(s)	304, 325, 351, 364, 380, 433, 477
Bme18I	GGWCC	2 cut(s)	109, 360
BmgT120I	GGNCC	3 cut(s)	109, 360, 445
BmiI	GGNNCC	5 cut(s)	111, 361, 369, 418, 430
BmrFI	CCNGG	7 cut(s)	304, 325, 351, 364, 380, 433, 477
BmrI	ACTGGG	1 cut(s)	321
BmuI	ACTGGG	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	68
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuMI	CCSGG	6 cut(s)	304, 325, 351, 364, 433, 477
BsaJI	CCNNGG	7 cut(s)	21, 66, 159, 186, 303, 363, 475
Bsc4I	CCNNNNNNNGG	6 cut(s)	302, 356, 357, 432, 482, 483
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	316, 493
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	7 cut(s)	21, 66, 159, 186, 303, 363, 475
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	6 cut(s)	302, 356, 357, 432, 482, 483
BseMII	CTCAG	2 cut(s)	156, 240
BseNI	ACTGG	2 cut(s)	316, 493
BseXI	GCAGC	4 cut(s)	22, 181, 328, 333
Bsh1236I	CGCG	2 cut(s)	23, 344
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	5 cut(s)	26, 71, 185, 378, 446
BshNI	GGYRCC	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	414
BsiSI	CCGG	8 cut(s)	224, 303, 324, 351, 363, 426, 432, 477
BslFI	GGGAC	2 cut(s)	373, 499
BslI	CCNNNNNNNGG	6 cut(s)	302, 356, 357, 432, 482, 483
BsmFI	GGGAC	2 cut(s)	373, 499
BsnI	GGCC	5 cut(s)	26, 71, 185, 378, 446
Bsp143I	GATC	4 cut(s)	114, 190, 230, 411
Bsp1720I	GCTNAGC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	186
BspANI	GGCC	5 cut(s)	26, 71, 185, 378, 446
BspCNI	CTCAG	2 cut(s)	157, 241
BspFNI	CGCG	2 cut(s)	23, 344
BspLI	GGNNCC	5 cut(s)	111, 361, 369, 418, 430
BspPI	GGATC	3 cut(s)	109, 198, 225
BspT107I	GGYRCC	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	316, 493
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	7 cut(s)	21, 66, 159, 186, 303, 363, 475
BssMI	GATC	4 cut(s)	114, 190, 230, 411
BssT1I	CCWWGG	2 cut(s)	66, 186
Bst2UI	CCWGG	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	165, 249
BstDSI	CCRYGG	2 cut(s)	21, 186
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	2 cut(s)	23, 344
BstHHI	GCGC	2 cut(s)	106, 346
BstKTI	GATC	4 cut(s)	117, 193, 233, 414
BstMBI	GATC	4 cut(s)	114, 190, 230, 411
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 41, 175, 284
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	7 cut(s)	302, 323, 349, 362, 378, 431, 475
BstUI	CGCG	2 cut(s)	23, 344
BstV1I	GCAGC	4 cut(s)	22, 181, 328, 333
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	5 cut(s)	26, 71, 185, 378, 446
BtgI	CCRYGG	2 cut(s)	21, 186
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	2 cut(s)	106, 346
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	3 cut(s)	109, 360, 445
Cfr42I	CCGCGG	1 cut(s)	24
CviAII	CATG	6 cut(s)	76, 127, 187, 212, 356, 458
DdeI	CTNAG	2 cut(s)	165, 249
DpnI	GATC	4 cut(s)	116, 192, 232, 413
DpnII	GATC	4 cut(s)	114, 190, 230, 411
EaeI	YGGCCR	2 cut(s)	24, 376
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	66, 186
Eco47I	GGWCC	2 cut(s)	109, 360
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	66, 186
ErhI	CCWWGG	2 cut(s)	66, 186
FaeI	CATG	6 cut(s)	79, 130, 190, 215, 359, 461
FaqI	GGGAC	2 cut(s)	373, 499
FatI	CATG	6 cut(s)	75, 126, 186, 211, 355, 457
FauI	CCCGC	3 cut(s)	266, 379, 485
Fnu4HI	GCNGC	7 cut(s)	21, 24, 36, 170, 204, 317, 347
FokI	GGATG	1 cut(s)	393
Fsp4HI	GCNGC	7 cut(s)	21, 24, 36, 170, 204, 317, 347
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	2 cut(s)	105, 345
GluI	GCNGC	7 cut(s)	21, 24, 36, 170, 204, 317, 347
HaeIII	GGCC	5 cut(s)	26, 71, 185, 378, 446
HapII	CCGG	8 cut(s)	224, 303, 324, 351, 363, 426, 432, 477
HhaI	GCGC	2 cut(s)	106, 346
Hin1II	CATG	6 cut(s)	79, 130, 190, 215, 359, 461
Hin6I	GCGC	2 cut(s)	104, 344
HinP1I	GCGC	2 cut(s)	104, 344
HpaII	CCGG	8 cut(s)	224, 303, 324, 351, 363, 426, 432, 477
Hpy188I	TCNGA	3 cut(s)	336, 411, 416
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	94, 140
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	4, 79
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 41, 175, 284
HpyF3I	CTNAG	2 cut(s)	165, 249
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	6 cut(s)	79, 130, 190, 215, 359, 461
HspAI	GCGC	2 cut(s)	104, 344
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	114, 190, 230, 411
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	4 cut(s)	22, 181, 328, 333
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	30
MalI	GATC	4 cut(s)	116, 192, 232, 413
MboI	GATC	4 cut(s)	114, 190, 230, 411
MboII	GAAGA	3 cut(s)	73, 97, 106
MflI	RGATCY	1 cut(s)	230
MlsI	TGGCCA	1 cut(s)	378
MluNI	TGGCCA	1 cut(s)	378
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	5 cut(s)	49, 154, 175, 382, 429
Mox20I	TGGCCA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	3 cut(s)	177, 458, 462
Msp20I	TGGCCA	1 cut(s)	378
MspA1I	CMGCKG	3 cut(s)	23, 273, 374
MspI	CCGG	8 cut(s)	224, 303, 324, 351, 363, 426, 432, 477
MspR9I	CCNGG	7 cut(s)	304, 325, 351, 364, 380, 433, 477
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	2 cut(s)	23, 344
MwoI	GCNNNNNNNGC	4 cut(s)	32, 41, 175, 284
NciI	CCSGG	6 cut(s)	304, 325, 351, 364, 433, 477
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	4 cut(s)	114, 190, 230, 411
NlaIII	CATG	6 cut(s)	79, 130, 190, 215, 359, 461
NlaIV	GGNNCC	5 cut(s)	111, 361, 369, 418, 430
NmeAIII	GCCGAG	1 cut(s)	184
OliI	CACNNNNGTG	2 cut(s)	177, 458
PkrI	GCNGC	7 cut(s)	22, 25, 37, 171, 205, 318, 348
Ple19I	CGATCG	1 cut(s)	414
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	5 cut(s)	111, 361, 369, 418, 430
PspPI	GGNCC	3 cut(s)	109, 360, 445
PspPPI	RGGWCCY	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	230
PvuI	CGATCG	1 cut(s)	414
RseI	CAYNNNNRTG	3 cut(s)	177, 458, 462
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	7 cut(s)	21, 24, 36, 170, 204, 317, 347
Sau3AI	GATC	4 cut(s)	114, 190, 230, 411
Sau96I	GGNCC	3 cut(s)	109, 360, 445
ScrFI	CCNGG	7 cut(s)	304, 325, 351, 364, 380, 433, 477
SetI	ASST	4 cut(s)	33, 37, 223, 384
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	2 cut(s)	109, 360
SmiMI	CAYNNNNRTG	3 cut(s)	177, 458, 462
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	7 cut(s)	302, 323, 349, 362, 378, 431, 475
StyI	CCWWGG	2 cut(s)	66, 186
TaiI	ACGT	1 cut(s)	33
TauI	GCSGC	3 cut(s)	23, 26, 206
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	4 cut(s)	35, 169, 316, 346
TspDTI	ATGAA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	109, 360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.