Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014054

Physical Location & Seq

Genomic Coordinates Forward (+)

22914834 .. 22923157

Gene Structure 8324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29640.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGTCGAGCGTTCTGGAGTCGATCGGCGTTGAAATAATCGGGGTAATGTCCCCAGTCTCAATCTGCATGTTCCTTGTTGTCCTTTTAGTCTACGCCCTCTCTCCCTCCAACCCTTCTTCCTCTTCATCAATCCGCACCGCCGCAAACCTCGTCTACCTCGAGAATCCCACCGACTCCACCTCCCAAAAGCTCGAAGGCGCTCTCCTCAACGCCCTCGTCTTCGTCATTCTCATCGCCCTCGTCACCTTCCTCCTCGTCCTCCTTTACTACTACAACTTCACTAACTTCTTGAAGAACTACATGCGCTTCTCCGCCTTCTTCGTCCTCGCCACCATGGGAGGTTCCATTTTCCTCTCCATTATCCAGCATTTCTCCATCCCGATCGACTCCATCACCTGCTTTCTCCTGCTCTTCAATTTCACCCTCGTCGGCGTCTTGTCCATGTTCGCTGCCGGCATGCCTATTTTCTTACGCCAAGCTTATATGGTTTCCTTGGGCATCATCGTCGCTGCTTGGTTCACCAAATTGCCTGAATGGACCACTTGGGTTCTGCTTGTCGCTCTTGCTCTCTATGATTTGGTCGCTGTTCTCGCCCCTGGCGGCCCTCTCAAGCTCCTTGTTGAGTTGGCCTCTAGCCGCGACGAGGAGCTCCCCGCTTTGGTCTATGAGGCTCGCCCCACCATGCCCCGAAACGCATCTGCCTTGGCCTTTCTGGTTGCCGGGTTTTCTGATTCTGGCTCCGTTGAGCTGCAGGCTGTCTCGAGGGACAATGCCAGTCCTAATCAGAATGATAGTGTGGTTGAGCTTGACAGTTTCGCCTGCGACGGAGGTGAGCGTAATAGAGACGAAGGGCAGAGGTTACTGTTGGTGGATAGGCACTCATCAAGCAGTGATTCGTCTGTCAGTGTTGTATCTGATAGAGCTAGGCAGTTTGGCAGTGCAGGGTCTGAAATTGTGGCCGACGAGGAGGAAATGTCTCCTCTTGTTCAAACGACTGGATCAGGCAATGGGAGAGAGCAGTTGAGAAGGGATGCTACTGAAATGTTCAGTCGAGTTTGCAGGCTAAGTTATTTGAGGTCGAGCGTACATGGAGTCGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005798 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0070011 GO:0071704 GO:0071944 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04310 ko04330 ko04722 ko05010 ko05165 map04310 map04330 map04722 map05010 map05165

Pfam Domains

Protein Families

Presenilin

Protein Analysis

369

Amino Acids

40.04

Weight (kDa)

4.71

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Presenilin	PF01080	10 - 429	4.1e-128	Presenilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08700
fragaria_vesca	FvH4_1g29640 FvH4_1g29640 FvH4_1g29640
malus_domestica	MD06G1041600.v1.1
prunus_persica	Prupe.5G048300_v2.0.a1
pyrus_communis	pycom06g03510
rosa_chinensis	RchiOBHm_Chr3g0495681
rosa_laevigata	RLG00000022596
rosa_multiflora	Rmu_sc0005747.1_g000009
rosa_roxburghii	Rroxscaffold_6G00390140
rosa_rugosa	Rorug03G0275600
rosa_samantha	Rh3AG322900 Rh3BG358400 Rh3CG355000 Rh3DG358300
rosa_wichuraiana	Rw3G028240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	407
AccI	GTMKAC	2 cut(s)	93, 156
AccII	CGCG	1 cut(s)	642
AciI	CCGC	7 cut(s)	136, 141, 144, 315, 603, 640, 657
AclWI	GGATC	1 cut(s)	1009
AcoI	YGGCCR	1 cut(s)	960
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	1 cut(s)	1089
AfiI	CCNNNNNNNGG	2 cut(s)	646, 661
AgsI	TTSAA	4 cut(s)	35, 295, 418, 992
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	7 cut(s)	193, 482, 616, 652, 751, 808, 926
AluI	AGCT	7 cut(s)	193, 482, 616, 652, 751, 808, 926
Alw21I	GWGCWC	1 cut(s)	654
Alw26I	GTCTC	4 cut(s)	64, 766, 840, 984
AlwI	GGATC	1 cut(s)	1009
AlwNI	CAGNNNCTG	1 cut(s)	950
Ama87I	CYCGRG	2 cut(s)	161, 763
AoxI	GGCC	4 cut(s)	604, 630, 708, 960
ApeKI	GCWGC	3 cut(s)	452, 512, 751
AspLEI	GCGC	2 cut(s)	203, 309
AspS9I	GGNCC	2 cut(s)	540, 605
AsuC2I	CCSGG	1 cut(s)	724
AsuHPI	GGTGA	5 cut(s)	238, 388, 415, 514, 845
AvaI	CYCGRG	2 cut(s)	161, 763
AvaII	GGWCC	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	654
BarI	GAAGNNNNNNTAC	2 cut(s)	1021, 1053
BbsI	GAAGAC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	654
BbvI	GCAGC	3 cut(s)	439, 499, 738
BccI	CCATC	2 cut(s)	386, 401
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	724
BcoDI	GTCTC	4 cut(s)	64, 766, 840, 984
BfaI	CTAG	2 cut(s)	636, 927
BfmI	CTRYAG	1 cut(s)	752
BfoI	RGCGCY	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	6 cut(s)	144, 453, 513, 604, 640, 752
BlsI	GCNGC	6 cut(s)	145, 454, 514, 605, 641, 753
Bme1390I	CCNGG	2 cut(s)	600, 724
Bme18I	GGWCC	1 cut(s)	540
BmeT110I	CYCGRG	2 cut(s)	161, 763
BmgT120I	GGNCC	2 cut(s)	540, 605
BmiI	GGNNCC	2 cut(s)	346, 742
BmrFI	CCNGG	2 cut(s)	600, 724
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	3 cut(s)	510, 707, 1024
BmuI	ACTGGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	724
BsaHI	GRCGYC	1 cut(s)	435
BsaJI	CCNNGG	4 cut(s)	336, 495, 598, 705
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 962, 992
Bsc4I	CCNNNNNNNGG	2 cut(s)	646, 661
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	3 cut(s)	56, 777, 1003
Bse3DI	GCAATG	1 cut(s)	1015
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	4 cut(s)	336, 495, 598, 705
BseGI	GGATG	2 cut(s)	378, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	646, 661
BseMI	GCAATG	1 cut(s)	1015
BseNI	ACTGG	3 cut(s)	56, 777, 1003
BseRI	GAGGAG	5 cut(s)	197, 245, 662, 972, 983
BseXI	GCAGC	3 cut(s)	439, 499, 738
BsgI	GTGCAG	1 cut(s)	963
Bsh1236I	CGCG	1 cut(s)	642
Bsh1285I	CGRYCG	2 cut(s)	27, 387
BshFI	GGCC	4 cut(s)	606, 632, 710, 962
BsiEI	CGRYCG	2 cut(s)	27, 387
BsiHKAI	GWGCWC	1 cut(s)	654
BsiHKCI	CYCGRG	2 cut(s)	161, 763
BsiSI	CCGG	2 cut(s)	456, 723
BslFI	GGGAC	2 cut(s)	37, 782
BslI	CCNNNNNNNGG	2 cut(s)	646, 661
BsmAI	GTCTC	4 cut(s)	64, 766, 840, 984
BsmBI	CGTCTC	1 cut(s)	840
BsmFI	GGGAC	2 cut(s)	37, 782
BsnI	GGCC	4 cut(s)	606, 632, 710, 962
BsoBI	CYCGRG	2 cut(s)	161, 763
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	3 cut(s)	24, 384, 1001
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	7 cut(s)	136, 141, 144, 315, 603, 640, 657
BspANI	GGCC	4 cut(s)	606, 632, 710, 962
BspFNI	CGCG	1 cut(s)	642
BspLI	GGNNCC	2 cut(s)	346, 742
BspMAI	CTGCAG	1 cut(s)	756
BspMI	ACCTGC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	1009
BspQI	GCTCTTC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	1015
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	3 cut(s)	56, 777, 1003
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	4 cut(s)	336, 495, 598, 705
BssMI	GATC	3 cut(s)	24, 384, 1001
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	3 cut(s)	336, 495, 705
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	815, 867
Bst6I	CTCTTC	2 cut(s)	130, 419
BstACI	GRCGYC	1 cut(s)	435
BstC8I	GCNNGC	6 cut(s)	457, 461, 676, 756, 823, 1064
BstDEI	CTNAG	1 cut(s)	1067
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	378, 1039
BstFNI	CGCG	1 cut(s)	642
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	203, 309
BstKTI	GATC	3 cut(s)	27, 387, 1004
BstMAI	GTCTC	4 cut(s)	64, 766, 840, 984
BstMBI	GATC	3 cut(s)	24, 384, 1001
BstMCI	CGRYCG	2 cut(s)	27, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	3 cut(s)	73, 307, 463
BstSCI	CCNGG	2 cut(s)	598, 722
BstSFI	CTRYAG	1 cut(s)	752
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	3 cut(s)	439, 499, 738
BstV2I	GAAGAC	1 cut(s)	214
BsuRI	GGCC	4 cut(s)	606, 632, 710, 962
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	378, 1039
BtsI	GCAGTG	2 cut(s)	898, 946
BtsIMutI	CAGTG	3 cut(s)	898, 913, 946
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	6 cut(s)	457, 461, 676, 756, 823, 1064
CaiI	CAGNNNCTG	1 cut(s)	950
CfoI	GCGC	2 cut(s)	203, 309
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	540, 605
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	1088
CviAII	CATG	7 cut(s)	70, 304, 337, 445, 460, 685, 1091
CviQI	GTAC	1 cut(s)	1088
DdeI	CTNAG	1 cut(s)	1067
DpnI	GATC	3 cut(s)	26, 386, 1003
DpnII	GATC	3 cut(s)	24, 384, 1001
EaeI	YGGCCR	1 cut(s)	960
Eam1104I	CTCTTC	2 cut(s)	130, 419
EarI	CTCTTC	2 cut(s)	130, 419
EciI	GGCGGA	1 cut(s)	304
Ecl136II	GAGCTC	1 cut(s)	652
Eco130I	CCWWGG	3 cut(s)	336, 495, 705
Eco24I	GRGCYC	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	540
Eco53kI	GAGCTC	1 cut(s)	652
Eco88I	CYCGRG	2 cut(s)	161, 763
EcoICRI	GAGCTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	3 cut(s)	336, 495, 705
EcoT38I	GRGCYC	1 cut(s)	654
ErhI	CCWWGG	3 cut(s)	336, 495, 705
Esp3I	CGTCTC	1 cut(s)	840
FaeI	CATG	7 cut(s)	73, 307, 340, 448, 463, 688, 1094
FaqI	GGGAC	2 cut(s)	37, 782
FatI	CATG	7 cut(s)	69, 303, 336, 444, 459, 684, 1090
FauI	CCCGC	1 cut(s)	664
FblI	GTMKAC	2 cut(s)	93, 156
Fnu4HI	GCNGC	6 cut(s)	144, 453, 513, 604, 640, 752
FokI	GGATG	2 cut(s)	365, 1046
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	6 cut(s)	144, 453, 513, 604, 640, 752
FspBI	CTAG	2 cut(s)	636, 927
GlaI	GCGC	2 cut(s)	202, 308
GluI	GCNGC	6 cut(s)	144, 453, 513, 604, 640, 752
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	4 cut(s)	606, 632, 710, 962
HapII	CCGG	2 cut(s)	456, 723
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	2 cut(s)	203, 309
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	7 cut(s)	73, 307, 340, 448, 463, 688, 1094
Hin6I	GCGC	2 cut(s)	201, 307
HinP1I	GCGC	2 cut(s)	201, 307
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	8 cut(s)	5, 20, 166, 176, 389, 734, 896, 1095
HpaII	CCGG	2 cut(s)	456, 723
HphI	GGTGA	5 cut(s)	238, 388, 415, 514, 845
Hpy166II	GTNNAC	3 cut(s)	94, 157, 522
Hpy188I	TCNGA	4 cut(s)	733, 789, 919, 952
Hpy188III	TCNNGA	5 cut(s)	17, 163, 292, 382, 763
Hpy8I	GTNNAC	3 cut(s)	94, 157, 522
Hpy99I	CGWCG	5 cut(s)	434, 512, 647, 830, 968
HpyAV	CCTTC	6 cut(s)	126, 191, 259, 328, 845, 1023
HpyCH4III	ACNGT	2 cut(s)	815, 867
HpyCH4V	TGCA	4 cut(s)	69, 754, 944, 1062
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	1 cut(s)	1067
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	7 cut(s)	73, 307, 340, 448, 463, 688, 1094
HspAI	GCGC	2 cut(s)	201, 307
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	24, 384, 1001
LguI	GCTCTTC	1 cut(s)	419
LmnI	GCTCC	4 cut(s)	621, 649, 657, 746
Lsp1109I	GCAGC	3 cut(s)	439, 499, 738
LweI	GCATC	3 cut(s)	510, 707, 1024
MaeI	CTAG	2 cut(s)	636, 927
MaeIII	GTNAC	2 cut(s)	244, 861
MalI	GATC	3 cut(s)	26, 386, 1003
MboI	GATC	3 cut(s)	24, 384, 1001
MboII	GAAGA	6 cut(s)	111, 117, 214, 307, 313, 406
MhlI	GDGCHC	1 cut(s)	654
MluCI	AATT	3 cut(s)	418, 527, 954
MlyI	GAGTC	5 cut(s)	14, 29, 170, 383, 1104
MmeI	TCCRAC	1 cut(s)	135
MroNI	GCCGGC	1 cut(s)	455
MspI	CCGG	2 cut(s)	456, 723
MspR9I	CCNGG	2 cut(s)	600, 724
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	1 cut(s)	593
NaeI	GCCGGC	1 cut(s)	457
NciI	CCSGG	1 cut(s)	724
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	24, 384, 1001
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	7 cut(s)	73, 307, 340, 448, 463, 688, 1094
NlaIV	GGNNCC	2 cut(s)	346, 742
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	3 cut(s)	73, 307, 463
PaeI	GCATGC	1 cut(s)	463
PaeR7I	CTCGAG	2 cut(s)	161, 763
PaqCI	CACCTGC	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	166, 734, 896
PkrI	GCNGC	6 cut(s)	145, 454, 514, 605, 641, 753
Ple19I	CGATCG	2 cut(s)	27, 387
PleI	GAGTC	5 cut(s)	13, 28, 170, 383, 1103
PpsI	GAGTC	5 cut(s)	13, 28, 170, 383, 1103
Psp124BI	GAGCTC	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	346, 742
PspPI	GGNCC	2 cut(s)	540, 605
PstI	CTGCAG	1 cut(s)	756
PstNI	CAGNNNCTG	1 cut(s)	950
PvuI	CGATCG	2 cut(s)	27, 387
RsaI	GTAC	1 cut(s)	1089
RsaNI	GTAC	1 cut(s)	1088
SacI	GAGCTC	1 cut(s)	654
SapI	GCTCTTC	1 cut(s)	419
SatI	GCNGC	6 cut(s)	144, 453, 513, 604, 640, 752
Sau3AI	GATC	3 cut(s)	24, 384, 1001
Sau96I	GGNCC	2 cut(s)	540, 605
SchI	GAGTC	5 cut(s)	14, 29, 170, 383, 1104
ScrFI	CCNGG	2 cut(s)	600, 724
SduI	GDGCHC	1 cut(s)	654
SfaNI	GCATC	3 cut(s)	510, 707, 1024
SfcI	CTRYAG	1 cut(s)	752
Sfr274I	CTCGAG	2 cut(s)	161, 763
SinI	GGWCC	1 cut(s)	540
SlaI	CTCGAG	2 cut(s)	161, 763
SmlI	CTYRAG	3 cut(s)	161, 611, 763
SmoI	CTYRAG	3 cut(s)	161, 611, 763
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	3 cut(s)	418, 527, 954
SsiI	CCGC	7 cut(s)	136, 141, 144, 315, 603, 640, 657
SspMI	CTAG	2 cut(s)	636, 927
SstI	GAGCTC	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	598, 722
StyI	CCWWGG	3 cut(s)	336, 495, 705
TaaI	ACNGT	2 cut(s)	815, 867
TaqI	TCGA	9 cut(s)	8, 23, 162, 195, 387, 764, 1054, 1082, 1098
TasI	AATT	3 cut(s)	418, 527, 954
TauI	GCSGC	3 cut(s)	146, 606, 642
TfiI	GAWTC	3 cut(s)	166, 734, 896
TscAI	CASTG	3 cut(s)	898, 913, 946
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	3 cut(s)	452, 512, 751
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	2 cut(s)	733, 843
TspRI	CASTG	3 cut(s)	898, 913, 946
VpaK11BI	GGWCC	1 cut(s)	540
XceI	RCATGY	3 cut(s)	73, 307, 463
XhoI	CTCGAG	2 cut(s)	161, 763
XmiI	GTMKAC	2 cut(s)	93, 156
XspI	CTAG	2 cut(s)	636, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.