Rh3AG322900

subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
45237768 .. 45241779
4012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG322900.1

Sequence Viewer

Length: 1119 bp
ATGGAGTCGAGCATCCTGGAGTCGATCGGCGTTGAAATCATCGGCGTAATGTCGCCAGTGTCTATCTGCATGTTCCTTGTCGTCCTTTTAGTCTACGCCCTCTCCCCTTCGAACCCTTCGTCGTCGTCGTCGATCCGGACCGCCGCAAACCTGGTGTACCTGGAGAGCCCCACCGACTCGACCTCCGAAAAGCTCGAAGGCGCTCTCCTCAACGCCCTCGTCTTCGTTATTCTCATCGCCCTCGTCACCTTCCTCCTCGTCCTCCTCTACTACTACAACTTCACTAATTTCTTGAAGAACTACATGCGCTTCTCCGCCTTCTTCGTCCTCGCCACCATGGGAGGTTCCATCTTCCTCTCCATTATCCAGCATTTCTCCATACCCATCGACTCCGTCACTTGCTTTCTGCTGCTCTTCAATTTCACTCTTGTCGGCGTCTTGTCCATGTTCGCCGCCGGCATGCCTATTCTCTTGCGCCAAGCTTATATGGTCTGCTTGGGCATCATCGTCGCTGCTTGGTTCACCAAATTGCCCGAATGGACCACTTGGGTTCTGCTTGTCGCTCTCGCTCTCTATGATTTGGTAGCTGTTCTCGCCCCCGGCGGCCCCCTTAAACTCCTCGTTGAGTTGGCCTCCACCCGCGACGAGGAGCTCCCCGCTTTGGTTTATGAGGCTCGCCCCACCGTCCCCCGAAACGCAAATGCATCCTCCTTGGGCCTTTTGGTTGCCGGGGTTTCCGATTCTGGCTCCGTTGAGCTCCAGGCTGTTTCGAGGGGCAATGTGAGTCCAGGTGAGAATGAAAACCGTGCTAGTTCAGACGACAGTGTGGTTGAGGTTGACAGTTTCGCCAAGGAGGGAGGTCAAAGTAACGGAGACGAAGGGCAGAGGTTACTGCCGGTGGATAGGGCACTGGGTAGGCACTCGTCAAGCAGTGATGCTTCGGAGTATTCAACTGTCAATGTTCCCTCTGATAGAGCTAGGCAGTTTGGCAGTGTAGCATCTGAAATTGTTGCCGATGAGGAGGAGATGTCTCCTCTTGTTCAAATGTCCGGATCAGGTAACGAGAGAGATGAGTTGAGAAGGGATGCTGCTGAAATGTTCAGTAGAGAAGCTTGCTAG

Protein Analysis

372

Amino Acids

40.11

Weight (kDa)

4.46

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Presenilin PF01080 10 - 300 8.7e-81 Presenilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08700
fragaria_vesca FvH4_1g29640 FvH4_1g29640 FvH4_1g29640
malus_domestica MD06G1041600.v1.1
prunus_persica Prupe.5G048300_v2.0.a1
pyrus_communis pycom06g03510
rosa_chinensis RchiOBHm_Chr3g0495681
rosa_laevigata RLG00000022596
rosa_multiflora Rmu_sc0005747.1_g000009
rosa_roxburghii Rroxscaffold_6G00390140
rosa_rugosa Rorug03G0275600
rosa_samantha Rh3AG322900 Rh3BG358400 Rh3CG355000 Rh3DG358300
rosa_wichuraiana Rw3G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 642
AccIII TCCGGA 2 cut(s) 135, 1049
AciI CCGC 7 cut(s) 141, 144, 315, 453, 603, 640, 657
AclWI GGATC 2 cut(s) 127, 1060
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 646, 661
AgsI TTSAA 5 cut(s) 35, 295, 418, 951, 1043
AjnI CCWGG 5 cut(s) 15, 150, 159, 759, 787
AluBI AGCT 7 cut(s) 193, 482, 587, 652, 757, 977, 1112
AluI AGCT 7 cut(s) 193, 482, 587, 652, 757, 977, 1112
Alw21I GWGCWC 2 cut(s) 654, 759
Alw26I GTCTC 2 cut(s) 867, 1035
AlwI GGATC 2 cut(s) 127, 1060
Aor13HI TCCGGA 2 cut(s) 135, 1049
AoxI GGCC 3 cut(s) 604, 630, 715
ApeKI GCWGC 3 cut(s) 409, 512, 1088
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 3 cut(s) 203, 309, 477
AspS9I GGNCC 4 cut(s) 138, 540, 605, 715
AsuC2I CCSGG 2 cut(s) 600, 730
AsuHPI GGTGA 3 cut(s) 238, 514, 803
AsuII TTCGAA 1 cut(s) 110
AvaII GGWCC 2 cut(s) 138, 540
BaeGI GKGCMC 1 cut(s) 910
BanII GRGCYC 3 cut(s) 170, 654, 759
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 2 cut(s) 654, 759
BbvI GCAGC 3 cut(s) 396, 499, 1075
BccI CCATC 2 cut(s) 356, 392
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 5 cut(s) 17, 152, 161, 761, 789
BcnI CCSGG 2 cut(s) 600, 730
BcoDI GTCTC 2 cut(s) 867, 1035
BfaI CTAG 3 cut(s) 810, 978, 1117
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 6 cut(s) 144, 410, 453, 513, 604, 1089
BlsI GCNGC 6 cut(s) 145, 411, 454, 514, 605, 1090
Bme1390I CCNGG 7 cut(s) 17, 152, 161, 600, 730, 761, 789
Bme18I GGWCC 2 cut(s) 138, 540
BmgT120I GGNCC 4 cut(s) 138, 540, 605, 715
BmiI GGNNCC 3 cut(s) 346, 607, 748
BmrFI CCNGG 7 cut(s) 17, 152, 161, 600, 730, 761, 789
BmrI ACTGGG 1 cut(s) 920
BmsI GCATC 6 cut(s) 21, 510, 713, 925, 1007, 1075
BmuI ACTGGG 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 214
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpmI CTGGAG 3 cut(s) 38, 182, 743
Bpu14I TTCGAA 1 cut(s) 110
BpuMI CCSGG 2 cut(s) 600, 730
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 5 cut(s) 336, 598, 711, 729, 849
BsaWI WCCGGW 2 cut(s) 135, 1049
BsaXI ACNNNNNCTCC 6 cut(s) 86, 116, 167, 197, 1013, 1043
Bsc4I CCNNNNNNNGG 2 cut(s) 646, 661
Bse118I RCCGGY 2 cut(s) 455, 895
Bse1I ACTGG 2 cut(s) 56, 915
Bse3DI GCAATG 1 cut(s) 784
BseAI TCCGGA 2 cut(s) 135, 1049
BseBI CCWGG 5 cut(s) 17, 152, 161, 761, 789
BseDI CCNNGG 5 cut(s) 336, 598, 711, 729, 849
BseGI GGATG 3 cut(s) 12, 704, 1090
BseLI CCNNNNNNNGG 2 cut(s) 646, 661
BseMI GCAATG 1 cut(s) 784
BseNI ACTGG 2 cut(s) 56, 915
BseRI GAGGAG 8 cut(s) 197, 245, 254, 608, 662, 1023, 1034, 1037
BseSI GKGCMC 1 cut(s) 910
BseXI GCAGC 3 cut(s) 396, 499, 1075
Bsh1236I CGCG 1 cut(s) 642
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 3 cut(s) 606, 632, 717
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 2 cut(s) 654, 759
BsiSI CCGG 6 cut(s) 136, 456, 600, 729, 896, 1050
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 2 cut(s) 646, 661
BsmAI GTCTC 2 cut(s) 867, 1035
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 1 cut(s) 671
BsnI GGCC 3 cut(s) 606, 632, 717
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 4 cut(s) 170, 654, 759, 910
Bsp13I TCCGGA 2 cut(s) 135, 1049
Bsp143I GATC 3 cut(s) 24, 132, 1052
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 7 cut(s) 141, 144, 315, 453, 603, 640, 657
BspANI GGCC 3 cut(s) 606, 632, 717
BspEI TCCGGA 2 cut(s) 135, 1049
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 3 cut(s) 346, 607, 748
BspPI GGATC 2 cut(s) 127, 1060
BspQI GCTCTTC 1 cut(s) 419
BspT104I TTCGAA 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 784
BsrFI RCCGGY 2 cut(s) 455, 895
BsrI ACTGG 2 cut(s) 56, 915
BssAI RCCGGY 2 cut(s) 455, 895
BssECI CCNNGG 5 cut(s) 336, 598, 711, 729, 849
BssMI GATC 3 cut(s) 24, 132, 1052
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 3 cut(s) 336, 711, 849
Bst2UI CCWGG 5 cut(s) 17, 152, 161, 761, 789
Bst4CI ACNGT 5 cut(s) 685, 806, 824, 842, 955
Bst6I CTCTTC 1 cut(s) 419
BstACI GRCGYC 1 cut(s) 435
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 4 cut(s) 457, 461, 676, 1114
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 12, 704, 1090
BstFNI CGCG 1 cut(s) 642
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 3 cut(s) 203, 309, 477
BstKTI GATC 3 cut(s) 27, 135, 1055
BstMAI GTCTC 2 cut(s) 867, 1035
BstMBI GATC 3 cut(s) 24, 132, 1052
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 593
BstNI CCWGG 5 cut(s) 17, 152, 161, 761, 789
BstNSI RCATGY 3 cut(s) 73, 307, 463
BstSCI CCNGG 7 cut(s) 15, 150, 159, 598, 728, 759, 787
BstSLI GKGCMC 1 cut(s) 910
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 3 cut(s) 396, 499, 1075
BstV2I GAAGAC 1 cut(s) 214
BsuRI GGCC 3 cut(s) 606, 632, 717
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 3 cut(s) 12, 704, 1090
BtsI GCAGTG 2 cut(s) 937, 997
BtsIMutI CAGTG 5 cut(s) 63, 829, 908, 937, 997
Cac8I GCNNGC 4 cut(s) 457, 461, 676, 1114
CfoI GCGC 3 cut(s) 203, 309, 477
Cfr10I RCCGGY 2 cut(s) 455, 895
Cfr13I GGNCC 4 cut(s) 138, 540, 605, 715
CpoI CGGWCCG 1 cut(s) 138
CseI GACGC 1 cut(s) 424
CsiI ACCWGGT 1 cut(s) 150
Csp6I GTAC 1 cut(s) 157
CspI CGGWCCG 1 cut(s) 138
CviAII CATG 5 cut(s) 70, 304, 337, 445, 460
CviQI GTAC 1 cut(s) 157
DpnI GATC 3 cut(s) 26, 134, 1054
DpnII GATC 3 cut(s) 24, 132, 1052
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
EciI GGCGGA 1 cut(s) 304
Ecl136II GAGCTC 2 cut(s) 652, 757
Eco130I CCWWGG 3 cut(s) 336, 711, 849
Eco24I GRGCYC 3 cut(s) 170, 654, 759
Eco47I GGWCC 2 cut(s) 138, 540
Eco53kI GAGCTC 2 cut(s) 652, 757
EcoICRI GAGCTC 2 cut(s) 652, 757
EcoRII CCWGG 5 cut(s) 15, 150, 159, 759, 787
EcoT14I CCWWGG 3 cut(s) 336, 711, 849
EcoT22I ATGCAT 1 cut(s) 706
EcoT38I GRGCYC 3 cut(s) 170, 654, 759
ErhI CCWWGG 3 cut(s) 336, 711, 849
Esp3I CGTCTC 1 cut(s) 867
FaeI CATG 5 cut(s) 73, 307, 340, 448, 463
FaqI GGGAC 1 cut(s) 671
FatI CATG 5 cut(s) 69, 303, 336, 444, 459
FauI CCCGC 2 cut(s) 647, 664
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 6 cut(s) 144, 410, 453, 513, 604, 1089
FokI GGATG 2 cut(s) 691, 1097
FriOI GRGCYC 3 cut(s) 170, 654, 759
Fsp4HI GCNGC 6 cut(s) 144, 410, 453, 513, 604, 1089
FspBI CTAG 3 cut(s) 810, 978, 1117
GlaI GCGC 3 cut(s) 202, 308, 476
GluI GCNGC 6 cut(s) 144, 410, 453, 513, 604, 1089
GsuI CTGGAG 3 cut(s) 38, 182, 743
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 3 cut(s) 606, 632, 717
HapII CCGG 6 cut(s) 136, 456, 600, 729, 896, 1050
HgaI GACGC 1 cut(s) 424
HhaI GCGC 3 cut(s) 203, 309, 477
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 5 cut(s) 73, 307, 340, 448, 463
Hin6I GCGC 3 cut(s) 201, 307, 475
HinP1I GCGC 3 cut(s) 201, 307, 475
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 2 cut(s) 480, 1110
HinfI GANTC 6 cut(s) 5, 20, 176, 389, 740, 784
HpaII CCGG 6 cut(s) 136, 456, 600, 729, 896, 1050
HphI GGTGA 3 cut(s) 238, 514, 803
Hpy166II GTNNAC 4 cut(s) 94, 157, 522, 838
Hpy188I TCNGA 6 cut(s) 187, 739, 817, 943, 970, 1003
Hpy188III TCNNGA 3 cut(s) 136, 292, 1050
Hpy8I GTNNAC 4 cut(s) 94, 157, 522, 838
Hpy99I CGWCG 6 cut(s) 124, 127, 130, 133, 512, 647
HpyAV CCTTC 7 cut(s) 117, 126, 191, 259, 328, 872, 1074
HpyCH4III ACNGT 5 cut(s) 685, 806, 824, 842, 955
HpyCH4V TGCA 2 cut(s) 69, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 593
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 5 cut(s) 73, 307, 340, 448, 463
HspAI GCGC 3 cut(s) 201, 307, 475
Kpn2I TCCGGA 2 cut(s) 135, 1049
KroI GCCGGC 1 cut(s) 455
KroNI GCCGGC 1 cut(s) 457
Kzo9I GATC 3 cut(s) 24, 132, 1052
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 4 cut(s) 649, 657, 752, 762
Lsp1109I GCAGC 3 cut(s) 396, 499, 1075
LweI GCATC 6 cut(s) 21, 510, 713, 925, 1007, 1075
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 3 cut(s) 810, 978, 1117
MaeIII GTNAC 5 cut(s) 244, 394, 866, 888, 1058
MalI GATC 3 cut(s) 26, 134, 1054
MboI GATC 3 cut(s) 24, 132, 1052
MboII GAAGA 5 cut(s) 214, 307, 313, 343, 406
MhlI GDGCHC 4 cut(s) 170, 654, 759, 910
MluCI AATT 4 cut(s) 286, 418, 527, 1005
MlyI GAGTC 5 cut(s) 14, 29, 170, 383, 793
Mph1103I ATGCAT 1 cut(s) 706
MroI TCCGGA 2 cut(s) 135, 1049
MroNI GCCGGC 1 cut(s) 455
MseI TTAA 1 cut(s) 612
MspI CCGG 6 cut(s) 136, 456, 600, 729, 896, 1050
MspR9I CCNGG 7 cut(s) 17, 152, 161, 600, 730, 761, 789
MvaI CCWGG 5 cut(s) 17, 152, 161, 761, 789
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 1 cut(s) 593
NaeI GCCGGC 1 cut(s) 457
NciI CCSGG 2 cut(s) 600, 730
NcoI CCATGG 1 cut(s) 336
NdeII GATC 3 cut(s) 24, 132, 1052
NgoMIV GCCGGC 1 cut(s) 455
NlaIII CATG 5 cut(s) 73, 307, 340, 448, 463
NlaIV GGNNCC 3 cut(s) 346, 607, 748
NmuCI GTSAC 2 cut(s) 244, 394
NsiI ATGCAT 1 cut(s) 706
NspI RCATGY 3 cut(s) 73, 307, 463
NspV TTCGAA 1 cut(s) 110
PaeI GCATGC 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 419
PcsI WCGNNNNNNNCGW 3 cut(s) 116, 125, 128
PdiI GCCGGC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 740
PflFI GACNNNGTC 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 6 cut(s) 145, 411, 454, 514, 605, 1090
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 5 cut(s) 13, 28, 170, 383, 792
PpsI GAGTC 5 cut(s) 13, 28, 170, 383, 792
Psp124BI GAGCTC 2 cut(s) 654, 759
Psp6I CCWGG 5 cut(s) 15, 150, 159, 759, 787
PspGI CCWGG 5 cut(s) 15, 150, 159, 759, 787
PspN4I GGNNCC 3 cut(s) 346, 607, 748
PspPI GGNCC 4 cut(s) 138, 540, 605, 715
PsyI GACNNNGTC 1 cut(s) 392
PvuI CGATCG 1 cut(s) 27
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
Rsr2I CGGWCCG 1 cut(s) 138
RsrII CGGWCCG 1 cut(s) 138
SacI GAGCTC 2 cut(s) 654, 759
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 6 cut(s) 144, 410, 453, 513, 604, 1089
Sau3AI GATC 3 cut(s) 24, 132, 1052
Sau96I GGNCC 4 cut(s) 138, 540, 605, 715
SchI GAGTC 5 cut(s) 14, 29, 170, 383, 793
ScrFI CCNGG 7 cut(s) 17, 152, 161, 600, 730, 761, 789
SduI GDGCHC 4 cut(s) 170, 654, 759, 910
SexAI ACCWGGT 1 cut(s) 150
SfaNI GCATC 6 cut(s) 21, 510, 713, 925, 1007, 1075
SfuI TTCGAA 1 cut(s) 110
SinI GGWCC 2 cut(s) 138, 540
SphI GCATGC 1 cut(s) 463
Sse9I AATT 4 cut(s) 286, 418, 527, 1005
SsiI CCGC 7 cut(s) 141, 144, 315, 453, 603, 640, 657
SspMI CTAG 3 cut(s) 810, 978, 1117
SstI GAGCTC 2 cut(s) 654, 759
StyD4I CCNGG 7 cut(s) 15, 150, 159, 598, 728, 759, 787
StyI CCWWGG 3 cut(s) 336, 711, 849
TaaI ACNGT 5 cut(s) 685, 806, 824, 842, 955
TaqI TCGA 8 cut(s) 8, 23, 110, 131, 179, 195, 387, 770
TasI AATT 4 cut(s) 286, 418, 527, 1005
TauI GCSGC 3 cut(s) 146, 455, 606
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 5 cut(s) 63, 829, 915, 937, 997
TseFI GTSAC 2 cut(s) 244, 394
TseI GCWGC 3 cut(s) 409, 512, 1088
Tsp45I GTSAC 2 cut(s) 244, 394
TspDTI ATGAA 1 cut(s) 813
TspGWI ACGGA 3 cut(s) 382, 739, 885
TspRI CASTG 5 cut(s) 63, 829, 915, 937, 997
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 2 cut(s) 138, 540
XceI RCATGY 3 cut(s) 73, 307, 463
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 3 cut(s) 810, 978, 1117
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.