Prupe.5G048300_v2.0.a1

subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
5131212 .. 5136149
4938 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G048300.1

Sequence Viewer

Length: 1383 bp
ATGGAGTCGAGCATCCTAGAGTCGATCGGCGTTGAGATTATCGGCGTCATGTCGCCGGTCTCCATCTGCATGCTCCTCGTAGTTCTCTTAGTCTACGCTCTCTCTCCTTCCAACCCCTTTTCCGCCGCCGCCTCCGCTCCCCCGATCCGCACCGCCGCCAACCTCGTCTACCTCGAGAGCCCCTCTGACTCCGCCTCCCAAAAGCTCGAAGGCGCTCTCCTCAACGCCTTGGTCTTCGTCGTCCTCATCGCCATCGTCACCTTCCTCCTCGTCCTTCTCTACTACTACAATTTCACCAACTTCTTGAAGAACTACATGCGCTTCTCTGCCTTCTTCGTCCTCGGCACCATGGGAGGTTCGATTTTCTTGTCCATAATCCAGCATTTCTCGATACCCATTGACTCCATCACTTGCTTTTTGCTGCTTTTCAATTTCACTGTTGTGGGAGTGTTGTCTGTGTTCTCTGGTGGGATACCCATTTTTCTACGCCAAGCTTATATGGTTTGTTTGGGGATTATTGTGGCGGCTTGGTTTACCAAGTTGCCCGAATGGACAACTTGGGTTTTGCTTGTGGCTCTGGCTGTGTATGATTTGGTGGCTGTGCTGGCACCCGGTGGGCCGCTTAAGCTGTTGGTGGAGTTGGCCTCTAGCCGGGATGAGGAGCTCCCCGCTTTGGTTTACGAGGCTCGCCCCACTGTGCCACGAAATACTCAGCGTCGTGGGTCCGGATTAGAACTTTTGGTTGCTGGGGTTTCGGATTCAGGGTCAGTTGAGCTTCAGGCAGTCACAAGGGACAATGTGAATCGAAATGAGAATGAAAGTCGTGGTAATTCAGAGTACAGTGCGGTTGAGTTTGGAAGTTTCGGGAGTGAGGGACATGAGAGTAATAGAGATGAAGGGGAGAGGTTACTATCAGAGGAGAATGCACGGGATAGGCAGTCGTTAAGCAGTGATTCTTTGGGATATTCAACTGTGATTGTTCAGTCTGATAGAGCTACGCAATTTAGCAGTGGAGCATCTGAGATTATTAATGAGGAAATGTCCCCTCTTGTTGAAATGACAGGACTGGGAAATGAGAGAGAGCAGTTGAGGAGGGATGGTAGCGAAATGTTCAGTAAAGGTATTAAACTTGGTCTTGGGGATTTCGTGTTCTACAGTGTTCTTGTGGGCAGAGCTGCAATGTATGACCTTATGACTGTGTATGCCTGTTATCTTGCCATTATTTCCGGACTTGGGTGCACTCTTATTTTGTTGTCAGTGTGCCATCGAGCTTTGCCTGCTCTGCCTATATCGATTACATTGGGTGTCGTTTTTTACTTCTTGACTCGGTTATTAATGGAGCCTTTTGTTGTTGGGACAGCTACAAATTTAGTGATGTTCTGA

Protein Analysis

461

Amino Acids

50.07

Weight (kDa)

4.75

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08700
fragaria_vesca FvH4_1g29640 FvH4_1g29640 FvH4_1g29640
malus_domestica MD06G1041600.v1.1
prunus_persica Prupe.5G048300_v2.0.a1
pyrus_communis pycom06g03510
rosa_chinensis RchiOBHm_Chr3g0495681
rosa_laevigata RLG00000022596
rosa_multiflora Rmu_sc0005747.1_g000009
rosa_roxburghii Rroxscaffold_6G00390140
rosa_rugosa Rorug03G0275600
rosa_samantha Rh3AG322900 Rh3BG358400 Rh3CG355000 Rh3DG358300
rosa_wichuraiana Rw3G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 344, 607
AccBSI CCGCTC 1 cut(s) 137
AccI GTMKAC 2 cut(s) 93, 168
AccIII TCCGGA 2 cut(s) 725, 1226
AclWI GGATC 1 cut(s) 139
AcsI RAATTY 1 cut(s) 1366
AcuI CTGAAG 1 cut(s) 761
AcyI GRCGYC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 1 cut(s) 839
AfiI CCNNNNNNNGG 4 cut(s) 651, 658, 673, 1233
AflII CTTAAG 1 cut(s) 623
AgsI TTSAA 4 cut(s) 307, 430, 969, 1055
AleI CACNNNNGTG 1 cut(s) 440
AloI GAACNNNNNNTCC 2 cut(s) 1133, 1165
AluBI AGCT 9 cut(s) 205, 494, 628, 664, 775, 995, 1175, 1271, 1361
AluI AGCT 9 cut(s) 205, 494, 628, 664, 775, 995, 1175, 1271, 1361
Alw21I GWGCWC 2 cut(s) 666, 1241
Alw26I GTCTC 1 cut(s) 64
Alw44I GTGCAC 1 cut(s) 1237
AlwI GGATC 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 173
Aor13HI TCCGGA 2 cut(s) 725, 1226
AoxI GGCC 2 cut(s) 617, 642
ApaLI GTGCAC 1 cut(s) 1237
ApeKI GCWGC 2 cut(s) 421, 1175
ApoI RAATTY 1 cut(s) 1366
AseI ATTAAT 2 cut(s) 1029, 1334
AspLEI GCGC 2 cut(s) 215, 321
AspS9I GGNCC 2 cut(s) 617, 723
AsuC2I CCSGG 2 cut(s) 612, 653
AsuHPI GGTGA 2 cut(s) 250, 286
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 723
BaeGI GKGCMC 1 cut(s) 1241
BanI GGYRCC 2 cut(s) 344, 607
BanII GRGCYC 2 cut(s) 182, 666
BbsI GAAGAC 1 cut(s) 226
Bbv12I GWGCWC 2 cut(s) 666, 1241
BbvI GCAGC 2 cut(s) 408, 1162
BccI CCATC 5 cut(s) 71, 260, 413, 1091, 1272
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciVI GTATCC 1 cut(s) 465
BcnI CCSGG 2 cut(s) 612, 653
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 2 cut(s) 17, 648
BfmI CTRYAG 1 cut(s) 1153
BfoI RGCGCY 1 cut(s) 216
BfrI CTTAAG 1 cut(s) 623
BfuI GTATCC 1 cut(s) 465
BisI GCNGC 7 cut(s) 126, 129, 156, 422, 525, 620, 1176
BlsI GCNGC 7 cut(s) 127, 130, 157, 423, 526, 621, 1177
Bme1390I CCNGG 2 cut(s) 612, 653
Bme18I GGWCC 1 cut(s) 723
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 617, 723
BmiI GGNNCC 4 cut(s) 346, 609, 724, 1341
BmrFI CCNGG 2 cut(s) 612, 653
BmrI ACTGGG 1 cut(s) 1076
BmsI GCATC 2 cut(s) 21, 1025
BmuI ACTGGG 1 cut(s) 1076
BpiI GAAGAC 1 cut(s) 226
BplI GAGNNNNNCTC 4 cut(s) 167, 199, 629, 661
BpuMI CCSGG 2 cut(s) 612, 653
Bsa29I ATCGAT 1 cut(s) 1292
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 3 cut(s) 228, 340, 348
BsaWI WCCGGW 2 cut(s) 725, 1226
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 1084, 1114
Bsc4I CCNNNNNNNGG 4 cut(s) 651, 658, 673, 1233
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 1071
Bse3DI GCAATG 1 cut(s) 1185
BseAI TCCGGA 2 cut(s) 725, 1226
BseCI ATCGAT 1 cut(s) 1292
BseDI CCNNGG 3 cut(s) 228, 340, 348
BseGI GGATG 3 cut(s) 12, 661, 1102
BseLI CCNNNNNNNGG 4 cut(s) 651, 658, 673, 1233
BseMI GCAATG 1 cut(s) 1185
BseMII CTCAG 2 cut(s) 725, 1011
BseNI ACTGG 1 cut(s) 1071
BseRI GAGGAG 6 cut(s) 65, 209, 257, 674, 932, 1105
BseSI GKGCMC 1 cut(s) 1241
BseXI GCAGC 2 cut(s) 408, 1162
BseYI CCCAGC 1 cut(s) 746
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 619, 644
BshNI GGYRCC 2 cut(s) 344, 607
BshVI ATCGAT 1 cut(s) 1292
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 2 cut(s) 666, 1241
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 5 cut(s) 56, 612, 652, 726, 1227
BslFI GGGAC 4 cut(s) 806, 888, 1027, 1369
BslI CCNNNNNNNGG 4 cut(s) 651, 658, 673, 1233
BsmAI GTCTC 1 cut(s) 64
BsmFI GGGAC 4 cut(s) 806, 888, 1027, 1369
BsmI GAATGC 1 cut(s) 928
BsnI GGCC 2 cut(s) 619, 644
Bso31I GGTCTC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 3 cut(s) 182, 666, 1241
Bsp13I TCCGGA 2 cut(s) 725, 1226
Bsp143I GATC 2 cut(s) 24, 144
Bsp19I CCATGG 1 cut(s) 348
BspANI GGCC 2 cut(s) 619, 644
BspCNI CTCAG 2 cut(s) 724, 1012
BspDI ATCGAT 1 cut(s) 1292
BspEI TCCGGA 2 cut(s) 725, 1226
BspLI GGNNCC 4 cut(s) 346, 609, 724, 1341
BspPI GGATC 1 cut(s) 139
BspT107I GGYRCC 2 cut(s) 344, 607
BspTI CTTAAG 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 64
BsrBI CCGCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 1185
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 1071
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 3 cut(s) 228, 340, 348
BssMI GATC 2 cut(s) 24, 144
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 2 cut(s) 228, 348
Bst4CI ACNGT 6 cut(s) 439, 697, 842, 973, 1157, 1198
BstACI GRCGYC 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 623
BstC8I GCNNGC 4 cut(s) 71, 606, 688, 1278
BstDEI CTNAG 3 cut(s) 88, 711, 1020
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 3 cut(s) 12, 661, 1102
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 215, 321
BstKTI GATC 2 cut(s) 27, 147
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 2 cut(s) 24, 144
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 5 cut(s) 134, 605, 625, 1277, 1282
BstNSI RCATGY 2 cut(s) 73, 319
BstSCI CCNGG 2 cut(s) 610, 651
BstSFI CTRYAG 1 cut(s) 1153
BstSLI GKGCMC 1 cut(s) 1241
BstV1I GCAGC 2 cut(s) 408, 1162
BstV2I GAAGAC 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 1292
BsuI GTATCC 1 cut(s) 465
BsuRI GGCC 2 cut(s) 619, 644
BsuTUI ATCGAT 1 cut(s) 1292
BtgI CCRYGG 1 cut(s) 348
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 3 cut(s) 12, 661, 1102
BtsI GCAGTG 2 cut(s) 955, 1015
BtsIMutI CAGTG 7 cut(s) 435, 693, 847, 955, 1015, 1162, 1263
Cac8I GCNNGC 4 cut(s) 71, 606, 688, 1278
CfoI GCGC 2 cut(s) 215, 321
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 617, 723
ClaI ATCGAT 1 cut(s) 1292
CseI GACGC 2 cut(s) 34, 704
Csp6I GTAC 1 cut(s) 838
CviAII CATG 5 cut(s) 49, 70, 316, 349, 878
CviQI GTAC 1 cut(s) 838
DdeI CTNAG 3 cut(s) 88, 711, 1020
DpnI GATC 2 cut(s) 26, 146
DpnII GATC 2 cut(s) 24, 144
DraIII CACNNNGTG 1 cut(s) 614
EciI GGCGGA 2 cut(s) 112, 181
Ecl136II GAGCTC 1 cut(s) 664
Eco130I CCWWGG 2 cut(s) 228, 348
Eco24I GRGCYC 2 cut(s) 182, 666
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 723
Eco53kI GAGCTC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 761
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 664
EcoT14I CCWWGG 2 cut(s) 228, 348
EcoT38I GRGCYC 2 cut(s) 182, 666
ErhI CCWWGG 2 cut(s) 228, 348
FaeI CATG 5 cut(s) 52, 73, 319, 352, 881
FaqI GGGAC 4 cut(s) 806, 888, 1027, 1369
FatI CATG 5 cut(s) 48, 69, 315, 348, 877
FauI CCCGC 1 cut(s) 676
FblI GTMKAC 2 cut(s) 93, 168
Fnu4HI GCNGC 7 cut(s) 126, 129, 156, 422, 525, 620, 1176
FokI GGATG 2 cut(s) 668, 1109
FriOI GRGCYC 2 cut(s) 182, 666
Fsp4HI GCNGC 7 cut(s) 126, 129, 156, 422, 525, 620, 1176
FspBI CTAG 2 cut(s) 17, 648
GlaI GCGC 2 cut(s) 214, 320
GluI GCNGC 7 cut(s) 126, 129, 156, 422, 525, 620, 1176
GsaI CCCAGC 1 cut(s) 750
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 619, 644
HapII CCGG 5 cut(s) 56, 612, 652, 726, 1227
HgaI GACGC 2 cut(s) 34, 704
HhaI GCGC 2 cut(s) 215, 321
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 5 cut(s) 52, 73, 319, 352, 881
Hin6I GCGC 2 cut(s) 213, 319
HinP1I GCGC 2 cut(s) 213, 319
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 8 cut(s) 5, 20, 188, 401, 758, 802, 953, 1324
HpaII CCGG 5 cut(s) 56, 612, 652, 726, 1227
HphI GGTGA 2 cut(s) 250, 286
Hpy166II GTNNAC 5 cut(s) 94, 169, 534, 679, 1239
Hpy188I TCNGA 7 cut(s) 187, 757, 835, 916, 988, 1021, 1382
Hpy188III TCNNGA 7 cut(s) 175, 304, 388, 726, 865, 1227, 1321
Hpy8I GTNNAC 5 cut(s) 94, 169, 534, 679, 1239
Hpy99I CGWCG 2 cut(s) 242, 720
HpyAV CCTTC 6 cut(s) 117, 203, 271, 284, 340, 890
HpyCH4III ACNGT 6 cut(s) 439, 697, 842, 973, 1157, 1198
HpyCH4V TGCA 4 cut(s) 69, 926, 1178, 1239
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 605, 625, 1277, 1282
HpyF3I CTNAG 3 cut(s) 88, 711, 1020
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 5 cut(s) 52, 73, 319, 352, 881
HspAI GCGC 2 cut(s) 213, 319
Kpn2I TCCGGA 2 cut(s) 725, 1226
Kzo9I GATC 2 cut(s) 24, 144
LmnI GCTCC 6 cut(s) 78, 142, 661, 669, 1013, 1339
Lsp1109I GCAGC 2 cut(s) 408, 1162
LweI GCATC 2 cut(s) 21, 1025
MaeI CTAG 2 cut(s) 17, 648
MaeIII GTNAC 3 cut(s) 256, 784, 906
MalI GATC 2 cut(s) 26, 146
MbiI CCGCTC 1 cut(s) 137
MboI GATC 2 cut(s) 24, 144
MboII GAAGA 3 cut(s) 226, 319, 325
MhlI GDGCHC 3 cut(s) 182, 666, 1241
MluCI AATT 5 cut(s) 289, 430, 829, 1001, 1366
MlyI GAGTC 5 cut(s) 14, 29, 182, 395, 1318
MmeI TCCRAC 1 cut(s) 135
MroI TCCGGA 2 cut(s) 725, 1226
MseI TTAA 5 cut(s) 624, 944, 1029, 1125, 1334
MslI CAYNNNNRTG 2 cut(s) 68, 440
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 5 cut(s) 56, 612, 652, 726, 1227
MspR9I CCNGG 2 cut(s) 612, 653
Mva1269I GAATGC 1 cut(s) 928
MwoI GCNNNNNNNGC 5 cut(s) 134, 605, 625, 1277, 1282
NciI CCSGG 2 cut(s) 612, 653
NcoI CCATGG 1 cut(s) 348
NdeII GATC 2 cut(s) 24, 144
NlaIII CATG 5 cut(s) 52, 73, 319, 352, 881
NlaIV GGNNCC 4 cut(s) 346, 609, 724, 1341
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 2 cut(s) 256, 784
NspI RCATGY 2 cut(s) 73, 319
OliI CACNNNNGTG 1 cut(s) 440
PaeI GCATGC 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 928
PfeI GAWTC 3 cut(s) 758, 802, 953
PkrI GCNGC 7 cut(s) 127, 130, 157, 423, 526, 621, 1177
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 5 cut(s) 13, 28, 182, 395, 1318
PpsI GAGTC 5 cut(s) 13, 28, 182, 395, 1318
PshBI ATTAAT 2 cut(s) 1029, 1334
Psp124BI GAGCTC 1 cut(s) 666
PspFI CCCAGC 1 cut(s) 746
PspN4I GGNNCC 4 cut(s) 346, 609, 724, 1341
PspPI GGNCC 2 cut(s) 617, 723
PvuI CGATCG 1 cut(s) 27
RsaI GTAC 1 cut(s) 839
RsaNI GTAC 1 cut(s) 838
RseI CAYNNNNRTG 2 cut(s) 68, 440
SacI GAGCTC 1 cut(s) 666
SaqAI TTAA 5 cut(s) 624, 944, 1029, 1125, 1334
SatI GCNGC 7 cut(s) 126, 129, 156, 422, 525, 620, 1176
Sau3AI GATC 2 cut(s) 24, 144
Sau96I GGNCC 2 cut(s) 617, 723
SchI GAGTC 5 cut(s) 14, 29, 182, 395, 1318
ScrFI CCNGG 2 cut(s) 612, 653
SduI GDGCHC 3 cut(s) 182, 666, 1241
SfaNI GCATC 2 cut(s) 21, 1025
SfcI CTRYAG 1 cut(s) 1153
Sfr274I CTCGAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 723
SlaI CTCGAG 1 cut(s) 173
SmiMI CAYNNNNRTG 2 cut(s) 68, 440
SmlI CTYRAG 2 cut(s) 173, 623
SmoI CTYRAG 2 cut(s) 173, 623
SphI GCATGC 1 cut(s) 73
Sse9I AATT 5 cut(s) 289, 430, 829, 1001, 1366
SspMI CTAG 2 cut(s) 17, 648
SstI GAGCTC 1 cut(s) 666
StyD4I CCNGG 2 cut(s) 610, 651
StyI CCWWGG 2 cut(s) 228, 348
TaaI ACNGT 6 cut(s) 439, 697, 842, 973, 1157, 1198
TaqI TCGA 9 cut(s) 8, 23, 174, 207, 359, 389, 805, 1267, 1292
TasI AATT 5 cut(s) 289, 430, 829, 1001, 1366
TatI WGTACW 1 cut(s) 837
TauI GCSGC 5 cut(s) 128, 131, 158, 527, 622
TfiI GAWTC 3 cut(s) 758, 802, 953
Tru1I TTAA 5 cut(s) 624, 944, 1029, 1125, 1334
Tru9I TTAA 5 cut(s) 624, 944, 1029, 1125, 1334
TscAI CASTG 7 cut(s) 442, 700, 847, 955, 1015, 1162, 1263
TseFI GTSAC 2 cut(s) 256, 784
TseI GCWGC 2 cut(s) 421, 1175
Tsp45I GTSAC 2 cut(s) 256, 784
TspDTI ATGAA 2 cut(s) 831, 909
TspRI CASTG 7 cut(s) 442, 700, 847, 955, 1015, 1162, 1263
Vha464I CTTAAG 1 cut(s) 623
VneI GTGCAC 1 cut(s) 1237
VpaK11BI GGWCC 1 cut(s) 723
VspI ATTAAT 2 cut(s) 1029, 1334
XapI RAATTY 1 cut(s) 1366
XceI RCATGY 2 cut(s) 73, 319
XhoI CTCGAG 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 93, 168
XspI CTAG 2 cut(s) 17, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.