FvH4_1g30201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016249
Physical Location & Seq
Reverse (-)
23899288 .. 23900401
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g30201.t1

Sequence Viewer

Length: 522 bp
ATGGCGAATTTTTCGGCTAGTCGTCGAAATCCGATGCAGTTTTTCGGCAAGTCACTAGAATCCGGCGATGGTTCCTGCGAAACAGCAGATCCGGCAGAGAGCCGTGAATATGGCTGGGCATGGGACGGGACGGGATTAGGGTCATCCCACGGCCCGTCCCGGACATTGCACACGGGACGGGATCGGGACGGGCCTTACCTTAAAAGCATGAGAGAGGGAACAATCTTGCCTGATGGAGGAAGCGGCGGAGGAGGAGGAGGCACGGTGCTTGTTGCTGCTGCTCCGAGAAGTCACGCTGGTCCTAGGAAGATTGGGGTTGCCTCGTCGTTGGTTGTAGTTCGTGAGGAGGAAGTGGAGGAGGAAGCAAGCGCCGAGGAGGAAGCGGAGGAGGAGGAATCGGGTGGTGAGATGCGGAGGCGGAGGAAGCAGGCGTCGAGGAGGAAGCTGAGGAGGAGGAAGCGAGCGGTGGAGAAGTTTGAAAGAGAGACTGAGAGAGTGAGGACCGAGGAGGAAGCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.92

Weight (kDa)

5.81

Isoelectric Point (pI)

74.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 464
AciI CCGC 7 cut(s) 243, 246, 383, 412, 418, 464, 515
AclWI GGATC 2 cut(s) 83, 189
AcsI RAATTY 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 479
AluBI AGCT 1 cut(s) 445
AluI AGCT 1 cut(s) 445
Alw26I GTCTC 1 cut(s) 479
AlwI GGATC 2 cut(s) 83, 189
AoxI GGCC 2 cut(s) 151, 191
ApeKI GCWGC 2 cut(s) 275, 278
ApoI RAATTY 1 cut(s) 7
AspA2I CCTAGG 1 cut(s) 302
AspLEI GCGC 1 cut(s) 371
AspS9I GGNCC 4 cut(s) 152, 191, 299, 501
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 2 cut(s) 299, 501
AvrII CCTAGG 1 cut(s) 302
BbvCI CCTCAGC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 262, 265
BccI CCATC 2 cut(s) 62, 227
BceAI ACGGC 2 cut(s) 87, 166
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 3 cut(s) 18, 56, 303
BfoI RGCGCY 1 cut(s) 372
BisI GCNGC 3 cut(s) 244, 276, 279
BlnI CCTAGG 1 cut(s) 302
BlsI GCNGC 3 cut(s) 245, 277, 280
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 2 cut(s) 299, 501
BmgT120I GGNCC 4 cut(s) 152, 191, 299, 501
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 24, 399
Bpu10I CCTNAGC 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 4 cut(s) 148, 302, 372, 504
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 164
BseDI CCNNGG 4 cut(s) 148, 302, 372, 504
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 2 cut(s) 437, 480
BseXI GCAGC 2 cut(s) 262, 265
BseYI CCCAGC 1 cut(s) 114
BshFI GGCC 2 cut(s) 153, 193
BsiSI CCGG 3 cut(s) 63, 92, 160
BslFI GGGAC 5 cut(s) 137, 142, 142, 189, 200
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 479
BsmFI GGGAC 5 cut(s) 137, 142, 142, 189, 200
BsnI GGCC 2 cut(s) 153, 193
Bsp143I GATC 2 cut(s) 88, 181
BspACI CCGC 7 cut(s) 243, 246, 383, 412, 418, 464, 515
BspANI GGCC 2 cut(s) 153, 193
BspCNI CTCAG 2 cut(s) 438, 481
BspLI GGNNCC 1 cut(s) 73
BspPI GGATC 2 cut(s) 83, 189
BsrBI CCGCTC 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 164
BssECI CCNNGG 4 cut(s) 148, 302, 372, 504
BssMI GATC 2 cut(s) 88, 181
BssNI GRCGYC 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 367, 429, 462
BstDEI CTNAG 2 cut(s) 446, 489
BstDSI CCRYGG 1 cut(s) 148
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 2 cut(s) 91, 184
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 2 cut(s) 88, 181
BstMWI GCNNNNNNNGC 2 cut(s) 92, 424
BstSCI CCNGG 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 262, 265
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 2 cut(s) 153, 193
BtgI CCRYGG 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 143
Cac8I GCNNGC 3 cut(s) 367, 429, 462
CfoI GCGC 1 cut(s) 371
Cfr13I GGNCC 4 cut(s) 152, 191, 299, 501
CseI GACGC 1 cut(s) 420
CviAII CATG 2 cut(s) 120, 208
CviJI RGCY 6 cut(s) 17, 102, 114, 153, 193, 445
CviKI_1 RGCY 6 cut(s) 17, 102, 114, 153, 193, 445
DdeI CTNAG 2 cut(s) 446, 489
DpnI GATC 2 cut(s) 90, 183
DpnII GATC 2 cut(s) 88, 181
EciI GGCGGA 2 cut(s) 261, 433
Eco130I CCWWGG 1 cut(s) 302
Eco47I GGWCC 2 cut(s) 299, 501
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 2 cut(s) 123, 211
FaiI YATR 3 cut(s) 111, 121, 209
FaqI GGGAC 5 cut(s) 137, 142, 142, 189, 200
FatI CATG 2 cut(s) 119, 207
Fnu4HI GCNGC 3 cut(s) 244, 276, 279
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 244, 276, 279
FspBI CTAG 3 cut(s) 18, 56, 303
GlaI GCGC 1 cut(s) 370
GluI GCNGC 3 cut(s) 244, 276, 279
GsaI CCCAGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 372
HaeIII GGCC 2 cut(s) 153, 193
HapII CCGG 3 cut(s) 63, 92, 160
HgaI GACGC 1 cut(s) 420
HhaI GCGC 1 cut(s) 371
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 2 cut(s) 123, 211
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HinfI GANTC 2 cut(s) 59, 395
HpaII CCGG 3 cut(s) 63, 92, 160
HphI GGTGA 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 33, 285
Hpy188III TCNNGA 2 cut(s) 185, 341
Hpy99I CGWCG 3 cut(s) 27, 328, 436
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 37, 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 424
HpyF3I CTNAG 2 cut(s) 446, 489
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 2 cut(s) 123, 211
HspAI GCGC 1 cut(s) 369
Kzo9I GATC 2 cut(s) 88, 181
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 8 cut(s) 76, 88, 100, 105, 173, 243, 282, 413
Lsp1109I GCAGC 2 cut(s) 262, 265
LweI GCATC 2 cut(s) 24, 399
MaeI CTAG 3 cut(s) 18, 56, 303
MaeIII GTNAC 2 cut(s) 51, 290
MalI GATC 2 cut(s) 90, 183
MbiI CCGCTC 1 cut(s) 464
MboI GATC 2 cut(s) 88, 181
MboII GAAGA 1 cut(s) 319
MflI RGATCY 1 cut(s) 88
MluCI AATT 1 cut(s) 7
MseI TTAA 1 cut(s) 201
MspI CCGG 3 cut(s) 63, 92, 160
MspR9I CCNGG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 92, 424
NciI CCSGG 1 cut(s) 160
NdeII GATC 2 cut(s) 88, 181
NlaIII CATG 2 cut(s) 123, 211
NlaIV GGNNCC 1 cut(s) 73
NmeAIII GCCGAG 1 cut(s) 397
NmuCI GTSAC 2 cut(s) 51, 290
PfeI GAWTC 2 cut(s) 59, 395
PfoI TCCNGGA 1 cut(s) 158
PkrI GCNGC 3 cut(s) 245, 277, 280
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 4 cut(s) 152, 191, 299, 501
PsuI RGATCY 1 cut(s) 88
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 3 cut(s) 244, 276, 279
Sau3AI GATC 2 cut(s) 88, 181
Sau96I GGNCC 4 cut(s) 152, 191, 299, 501
ScrFI CCNGG 1 cut(s) 160
SetI ASST 2 cut(s) 201, 447
SfaNI GCATC 2 cut(s) 24, 399
SinI GGWCC 2 cut(s) 299, 501
Sse9I AATT 1 cut(s) 7
SsiI CCGC 7 cut(s) 243, 246, 383, 412, 418, 464, 515
SspMI CTAG 3 cut(s) 18, 56, 303
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 2 cut(s) 25, 434
TaqII GACCGA 1 cut(s) 518
TasI AATT 1 cut(s) 7
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 2 cut(s) 59, 395
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 2 cut(s) 51, 290
TseI GCWGC 2 cut(s) 275, 278
Tsp45I GTSAC 2 cut(s) 51, 290
VpaK11BI GGWCC 2 cut(s) 299, 501
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 1 cut(s) 7
XmaJI CCTAGG 1 cut(s) 302
XspI CTAG 3 cut(s) 18, 56, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.