Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016249

Physical Location & Seq

Genomic Coordinates Reverse (-)

8778287 .. 8781376

Gene Structure 3090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08572.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGTGGTGACCGTGAGAGGAGGTTGTGGCTGGAGCGATGGTTTCTAGTGGTAGCAGTGACAAGAGGAAGGAGAGATGGGAGGGAGGAAAGAGAAGGGAGAGAGAGAGAGATCGAGGAATGGGGAAAGGAGGCGCGGCTCAACGAAATAGAGAGTTTTGGGGGTGCTGGGTCCTGCAAACCTTGGGCGAAACTCAGACGCCTTTTGATGGAGCTTTGGAGCTGCATCAATCGGGGTTCAAAGCGGAGGCTTAGGAGTTCTGCTGGGGTTGAGATTCGGCAAGGAGTTTGGACGGAGACGAGGGTCTGGAGGTCCTCGACGGCGTTAGTGGCAGAGGAGAGAGTGGGAGGAGTAGTAGAGGTTGTTGAGGTCGTAGGTGGCTTGGAGATTTTCGAGGTCAAAAGAAGTGTAGAAGGCGGGCTTGGCAGGTGGGGATGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

17.04

Weight (kDa)

9.85

Isoelectric Point (pI)

76.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30201 FvH4_2g16142 FvH4_3g31373 FvH4_3g31400 FvH4_4g08572 FvH4_4g10191 FvH4_4g14141 FvH4_5g06903 FvH4_7g04901
rosa_chinensis	RchiOBHm_Chr5g0058111
rosa_roxburghii	Rroxscaffold_1G00022500
rosa_rugosa	Rorug05G0310800
rosa_samantha	Rh5AG379500 Rh5CG414500 Rh7BG226700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	417
Acc36I	ACCTGC	1 cut(s)	417
AccII	CGCG	1 cut(s)	136
AciI	CCGC	3 cut(s)	136, 244, 417
AcyI	GRCGYC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	2 cut(s)	214, 222
AluI	AGCT	2 cut(s)	214, 222
Alw26I	GTCTC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	171, 312
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	2 cut(s)	171, 312
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	4 cut(s)	33, 71, 202, 429
BceAI	ACGGC	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	417
BisI	GCNGC	2 cut(s)	137, 223
BlsI	GCNGC	2 cut(s)	138, 224
Bme18I	GGWCC	2 cut(s)	171, 312
BmgT120I	GGNCC	2 cut(s)	171, 312
BmiI	GGNNCC	1 cut(s)	172
BmsI	GCATC	1 cut(s)	234
BoxI	GACNNNNGTC	1 cut(s)	302
BpmI	CTGGAG	2 cut(s)	53, 328
Bpu10I	CCTNAGC	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 339, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	208
BseRI	GAGGAG	3 cut(s)	34, 350, 363
BseXI	GCAGC	1 cut(s)	209
BseYI	CCCAGC	2 cut(s)	167, 263
Bsh1236I	CGCG	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	290
BsmBI	CGTCTC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	136, 244, 417
BspCNI	CTCAG	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	2 cut(s)	194, 251
BstEII	GGTNACC	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	440
BstFNI	CGCG	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 423
BstPAI	GACNNNNGTC	1 cut(s)	302
BstPI	GGTNACC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	209
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	440
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	419
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	171, 312
CseI	GACGC	1 cut(s)	207
CviJI	RGCY	7 cut(s)	31, 139, 214, 222, 250, 381, 421
CviKI_1	RGCY	7 cut(s)	31, 139, 214, 222, 250, 381, 421
DdeI	CTNAG	2 cut(s)	194, 251
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	171, 312
Eco91I	GGTNACC	1 cut(s)	8
EcoO109I	RGGNCCY	2 cut(s)	171, 312
EcoO65I	GGTNACC	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	290
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FauI	CCCGC	1 cut(s)	410
Fnu4HI	GCNGC	2 cut(s)	137, 223
Fsp4HI	GCNGC	2 cut(s)	137, 223
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	2 cut(s)	137, 223
GsaI	CCCAGC	2 cut(s)	171, 267
GsuI	CTGGAG	2 cut(s)	53, 328
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	274
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	3 cut(s)	63, 89, 407
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	177, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 423
HpyF3I	CTNAG	2 cut(s)	194, 251
Hsp92I	GRCGYC	1 cut(s)	199
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	3 cut(s)	34, 211, 219
LpnPI	CCDG	6 cut(s)	17, 153, 187, 249, 292, 412
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	8, 58
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	329, 423
NdeII	GATC	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	2 cut(s)	8, 58
PaqCI	CACCTGC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	138, 224
PpuMI	RGGWCCY	2 cut(s)	171, 312
PshAI	GACNNNNGTC	1 cut(s)	302
Psp5II	RGGWCCY	2 cut(s)	171, 312
PspEI	GGTNACC	1 cut(s)	8
PspFI	CCCAGC	2 cut(s)	167, 263
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	171, 312
PspPPI	RGGWCCY	2 cut(s)	171, 312
SatI	GCNGC	2 cut(s)	137, 223
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	2 cut(s)	171, 312
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	2 cut(s)	171, 312
SsiI	CCGC	3 cut(s)	136, 244, 417
SspMI	CTAG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	114, 317, 393
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	2 cut(s)	8, 58
TseI	GCWGC	1 cut(s)	222
Tsp45I	GTSAC	2 cut(s)	8, 58
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	2 cut(s)	171, 312
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.