Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016249

Physical Location & Seq

Genomic Coordinates Forward (+)

13251579 .. 13260541

Gene Structure 8963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10191.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGAAGGTGGGGGTTCCAGCGATATCTTATAAGAAGAGTTGGGAGACGGTGGCCATCACCCCCTACCGGATCAGATCATCCACATCGTGGTTGAAATCTAGAAGCAGAGGAGATGTAGTCGAGGACGAAGGGGAGGGTATGCAGTCGAGGCCGAAGCAGAGGTCTTCAAGAAGTTATCTTCGAAGTCAAGCCGGAAGTCGCGTCGAGGCAACAGAGCCACATCATTGTCGTCTGTTGGGGGCAGAGCTTGGATTATGGAGGAAGGCAGAGCTTGGATTCTTGGTTGAGGACTGCTACACCACCACCTTGTCATCTTGGCTCGGTATGTGGAGAAACCAGCAAGGACAAGCAACTACAATTGTAGAATTGAGGAGATTAGAGAATTTACGGGGAGACTATGGAGAAATTCCGGCAAGCAGCCAGAATCTGGCAGAACATTCCGGCAAGTCGCGGGAATCCGGCGAGGTTCCAGCGAGGCAACATAATCGGCTGAGAGCCGTTAAGAAAGGGGTTGCAGGGCATATATGCTTGGAAAGATTGTTCCAAGATGAAGAGAATGGGACCAGCCTCATCACCAGAGGAGGCCGGAATTGGCGCCGGCGAGGCCGAGAAGTTCCAACAGCAATTCTGGAAATTCTGGGCAATTTGAGAACCAGAGGTGGCCGGAATTGGGGTCTACTTGAGTTTCCTGCAAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.41

Weight (kDa)

10.15

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30201 FvH4_2g16142 FvH4_3g31373 FvH4_3g31400 FvH4_4g08572 FvH4_4g10191 FvH4_4g14141 FvH4_5g06903 FvH4_7g04901
rosa_chinensis	RchiOBHm_Chr5g0058111
rosa_roxburghii	Rroxscaffold_1G00022500
rosa_rugosa	Rorug05G0310800
rosa_samantha	Rh5AG379500 Rh5CG414500 Rh7BG226700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	597
AccB7I	CCANNNNNTGG	2 cut(s)	90, 430
AccI	GTMKAC	1 cut(s)	679
AccII	CGCG	2 cut(s)	204, 454
AciI	CCGC	1 cut(s)	454
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	2 cut(s)	54, 664
AcsI	RAATTY	3 cut(s)	385, 408, 636
AcyI	GRCGYC	1 cut(s)	598
AdeI	CACNNNGTG	1 cut(s)	90
AfiI	CCNNNNNNNGG	4 cut(s)	69, 90, 430, 673
AgsI	TTSAA	2 cut(s)	97, 171
AloI	GAACNNNNNNTCC	2 cut(s)	527, 559
AluBI	AGCT	2 cut(s)	250, 274
AluI	AGCT	2 cut(s)	250, 274
Alw26I	GTCTC	2 cut(s)	41, 390
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	430
AoxI	GGCC	5 cut(s)	54, 152, 586, 607, 664
ApeKI	GCWGC	1 cut(s)	420
ApoI	RAATTY	3 cut(s)	385, 408, 636
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	52, 568
AsuII	TTCGAA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	564
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BcoDI	GTCTC	2 cut(s)	41, 390
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	601
BglI	GCCNNNNNGGC	1 cut(s)	606
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	4 cut(s)	18, 471, 565, 599
BpiI	GAAGAC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	704
BsaHI	GRCGYC	1 cut(s)	598
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 90, 430, 673
Bse118I	RCCGGY	1 cut(s)	600
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	4 cut(s)	69, 90, 430, 673
BseMII	CTCAG	1 cut(s)	485
BseRI	GAGGAG	3 cut(s)	126, 388, 597
BseXI	GCAGC	1 cut(s)	432
Bsh1236I	CGCG	2 cut(s)	204, 454
BshFI	GGCC	5 cut(s)	56, 154, 588, 609, 666
BshNI	GGYRCC	1 cut(s)	597
BsiSI	CCGG	8 cut(s)	70, 195, 413, 444, 462, 589, 601, 667
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	4 cut(s)	69, 90, 430, 673
BsmAI	GTCTC	2 cut(s)	41, 390
BsmBI	CGTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	577
BsnI	GGCC	5 cut(s)	56, 154, 588, 609, 666
Bsp119I	TTCGAA	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	72, 77
BspACI	CCGC	1 cut(s)	454
BspANI	GGCC	5 cut(s)	56, 154, 588, 609, 666
BspCNI	CTCAG	1 cut(s)	486
BspFNI	CGCG	2 cut(s)	204, 454
BspLI	GGNNCC	4 cut(s)	18, 471, 565, 599
BspPI	GGATC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	600
BssMI	GATC	2 cut(s)	72, 77
BssNI	GRCGYC	1 cut(s)	598
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	32, 549
BstACI	GRCGYC	1 cut(s)	598
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	418, 602
BstDEI	CTNAG	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	2 cut(s)	204, 454
BstH2I	RGCGCY	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	2 cut(s)	75, 80
BstMAI	GTCTC	2 cut(s)	41, 390
BstMBI	GATC	2 cut(s)	72, 77
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 606
BstUI	CGCG	2 cut(s)	204, 454
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	5 cut(s)	56, 154, 588, 609, 666
BtsCI	GGATG	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	418, 602
CaiI	CAGNNNCTG	1 cut(s)	430
CfoI	GCGC	1 cut(s)	600
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	564
CseI	GACGC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	494
DinI	GGCGCC	1 cut(s)	599
DpnI	GATC	2 cut(s)	74, 79
DpnII	GATC	2 cut(s)	72, 77
DraIII	CACNNNGTG	1 cut(s)	90
EaeI	YGGCCR	2 cut(s)	54, 664
Eam1104I	CTCTTC	2 cut(s)	32, 549
EarI	CTCTTC	2 cut(s)	32, 549
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	564
EcoRV	GATATC	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	599
EheI	GGCGCC	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	41
FaqI	GGGAC	1 cut(s)	577
FauI	CCCGC	1 cut(s)	447
FblI	GTMKAC	1 cut(s)	679
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	421
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	1 cut(s)	421
HaeII	RGCGCY	1 cut(s)	601
HaeIII	GGCC	5 cut(s)	56, 154, 588, 609, 666
HapII	CCGG	8 cut(s)	70, 195, 413, 444, 462, 589, 601, 667
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	600
Hin1I	GRCGYC	1 cut(s)	598
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HinfI	GANTC	3 cut(s)	279, 427, 458
HpaII	CCGG	8 cut(s)	70, 195, 413, 444, 462, 589, 601, 667
HphI	GGTGA	2 cut(s)	52, 568
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	3 cut(s)	102, 171, 632
Hpy8I	GTNNAC	1 cut(s)	680
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	125, 259
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	145, 518, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 606
HpyF3I	CTNAG	1 cut(s)	494
Hsp92I	GRCGYC	1 cut(s)	598
HspAI	GCGC	1 cut(s)	598
KasI	GGCGCC	1 cut(s)	597
KroI	GCCGGC	1 cut(s)	600
KroNI	GCCGGC	1 cut(s)	602
Kzo9I	GATC	2 cut(s)	72, 77
Lsp1109I	GCAGC	1 cut(s)	432
MaeI	CTAG	1 cut(s)	102
MalI	GATC	2 cut(s)	74, 79
MboI	GATC	2 cut(s)	72, 77
MboII	GAAGA	4 cut(s)	49, 159, 173, 566
MfeI	CAATTG	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	56
MluNI	TGGCCA	1 cut(s)	56
Mly113I	GGCGCC	1 cut(s)	598
MmeI	TCCRAC	1 cut(s)	644
Mox20I	TGGCCA	1 cut(s)	56
MreI	CGCCGGCG	1 cut(s)	600
MroNI	GCCGGC	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	8 cut(s)	70, 195, 413, 444, 462, 589, 601, 667
MunI	CAATTG	1 cut(s)	360
MvnI	CGCG	2 cut(s)	204, 454
MwoI	GCNNNNNNNGC	2 cut(s)	151, 606
NaeI	GCCGGC	1 cut(s)	602
NarI	GGCGCC	1 cut(s)	598
NdeII	GATC	2 cut(s)	72, 77
NgoMIV	GCCGGC	1 cut(s)	600
NlaIV	GGNNCC	4 cut(s)	18, 471, 565, 599
NmeAIII	GCCGAG	1 cut(s)	635
NspV	TTCGAA	1 cut(s)	184
PdiI	GCCGGC	1 cut(s)	602
PfeI	GAWTC	3 cut(s)	279, 427, 458
PflMI	CCANNNNNTGG	2 cut(s)	90, 430
PkrI	GCNGC	1 cut(s)	422
PluTI	GGCGCC	1 cut(s)	601
PsiI	TTATAA	1 cut(s)	33
PspN4I	GGNNCC	4 cut(s)	18, 471, 565, 599
PspPI	GGNCC	1 cut(s)	564
PstNI	CAGNNNCTG	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	2 cut(s)	72, 77
Sau96I	GGNCC	1 cut(s)	564
SetI	ASST	7 cut(s)	12, 167, 252, 276, 311, 471, 664
SfoI	GGCGCC	1 cut(s)	599
SfuI	TTCGAA	1 cut(s)	184
SgrAI	CRCCGGYG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SsiI	CCGC	1 cut(s)	454
SspDI	GGCGCC	1 cut(s)	597
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	4 cut(s)	123, 149, 184, 207
TfiI	GAWTC	3 cut(s)	279, 427, 458
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TseI	GCWGC	1 cut(s)	420
TspDTI	ATGAA	1 cut(s)	567
Van91I	CCANNNNNTGG	2 cut(s)	90, 430
VpaK11BI	GGWCC	1 cut(s)	564
XapI	RAATTY	3 cut(s)	385, 408, 636
XbaI	TCTAGA	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	679
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.