Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016249

Physical Location & Seq

Genomic Coordinates Forward (+)

25586404 .. 25595995

Gene Structure 9592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCCAATTTTCCGGGAAGTGGCTGGAATCCGGTAAAGTTTTCCGGCAAGTCGCCGGATCCGGTGAAGTTTTCCAACAAGTCATCGGGATCCGGCGAGGGTTCCGGCGAAGCAGTAGATCCGACAGAGCGTCGAGAAAGTTGTGGCTGTGAGAGGCGGATTAGGGATCAGAAGAGGGTTCAATATGAGGATGAGGTCCGCAACAATCCCCTGAACTTGGACTCTTGGCTCGCTTACATAGCGCTAGAAGAGTCTGCTGCTGCCAATAAGCACCGAATCAGAGAGCTGTTTCGGCGAGCTGTAGCTAATGTTCCTCTGGTGCCGGAGTGCTACCGGGATGGGAAGCTGCGTTGGCGGCGGTATGTTCAGATGTGGATCTATTACGCAACTTATGAAGAGAGGCTCGGAGGAGAGGCAGCGCCGGCGCAAACGAGACAAGTGTATGAGCAGTGCCTTGCAGTGATTCCTCATCAAAAGTTCTCATTTGCAAAAGTATGGCTTCTTGCTGCAGGGTTGGAGTTACGACAGAGGAATCTCAAGGGTGCGCGGGAGATCCTCGGCACTACAATGAGAGTGGCACCCAAACACAAGATATTTAGGAGGTGCATTGATATGGAGATGAAGCTTGGGAATGCATCAAGCAGGGGGGAACTGGAGTGTCATGAACAGGTGTGGATGGCATACATTAGGTTTGAAATATCCGAGGGGGAGGTTGAGAGGACTAGACAACTTTTCGAGAGACTACTAGAATGTTCGAATCATGTGAAGGTGTGGATCGATTATGCAAAGTTTGAGGCAGTAGAGAACCGTTCTATTGAGCATGCAAGAAGGGTTTTCAGTAGAGCTGCTGACTGTTTCAGATTTGATAGAACTGAGGAGAATAGGAGGGTGTTGCGACAACAATGGTTATGTATGGAGGCTAGCTTTGGGGATCTGTGTGATATTAGCCTAATGCAATCCAAGTTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071007 GO:0071010 GO:0071011 GO:0071012 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

HAT Suf TPR_8

Protein Analysis

324

Amino Acids

37.65

Weight (kDa)

8.96

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_Syf1_CNRKL1_N	PF23233	59 - 200	1.2e-09	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_Syf1_CNRKL1_C	PF23231	120 - 292	7.5e-14	Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N	PF23233	222 - 283	3.7e-07	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C	PF23241	223 - 289	2.4e-12	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016249)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30201 FvH4_2g16142 FvH4_3g31373 FvH4_3g31400 FvH4_4g08572 FvH4_4g10191 FvH4_4g14141 FvH4_5g06903 FvH4_7g04901
rosa_chinensis	RchiOBHm_Chr5g0058111
rosa_roxburghii	Rroxscaffold_1G00022500
rosa_rugosa	Rorug05G0310800
rosa_samantha	Rh5AG379500 Rh5CG414500 Rh7BG226700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	319, 577
AccII	CGCG	1 cut(s)	547
AciI	CCGC	5 cut(s)	157, 199, 355, 358, 547
AcoI	YGGCCR	1 cut(s)	3
AfeI	AGCGCT	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	20, 217
AgsI	TTSAA	2 cut(s)	182, 695
AhdI	GACNNNNNGTC	1 cut(s)	129
AluBI	AGCT	7 cut(s)	286, 299, 305, 346, 625, 845, 924
AluI	AGCT	7 cut(s)	286, 299, 305, 346, 625, 845, 924
Alw26I	GTCTC	2 cut(s)	427, 733
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	6 cut(s)	257, 260, 346, 416, 506, 845
AspLEI	GCGC	4 cut(s)	244, 421, 427, 547
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	2 cut(s)	15, 335
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	755
AsuNHI	GCTAGC	1 cut(s)	920
AvaII	GGWCC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	58, 89
BanI	GGYRCC	2 cut(s)	319, 577
BbvI	GCAGC	6 cut(s)	244, 247, 333, 428, 493, 832
BccI	CCATC	2 cut(s)	332, 670
BcnI	CCSGG	2 cut(s)	15, 335
BcoDI	GTCTC	2 cut(s)	427, 733
BfaI	CTAG	4 cut(s)	245, 723, 746, 921
BfmI	CTRYAG	2 cut(s)	300, 507
BfoI	RGCGCY	2 cut(s)	245, 422
BisI	GCNGC	7 cut(s)	258, 261, 347, 356, 417, 507, 846
BlsI	GCNGC	7 cut(s)	259, 262, 348, 357, 418, 508, 847
Bme1390I	CCNGG	2 cut(s)	15, 335
Bme18I	GGWCC	1 cut(s)	196
BmeRI	GACNNNNNGTC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	5 cut(s)	60, 91, 103, 321, 579
BmrFI	CCNGG	2 cut(s)	15, 335
BmsI	GCATC	1 cut(s)	644
BmtI	GCTAGC	1 cut(s)	924
BpmI	CTGGAG	1 cut(s)	674
Bpu14I	TTCGAA	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	2 cut(s)	15, 335
Bsa29I	ATCGAT	1 cut(s)	777
BsaBI	GATNNNNATC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	556, 702
BsaWI	WCCGGW	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 217
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	374
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	2 cut(s)	556, 702
BseGI	GGATG	3 cut(s)	196, 343, 681
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	20, 217
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	2 cut(s)	423, 890
BseXI	GCAGC	6 cut(s)	244, 247, 333, 428, 493, 832
Bsh1236I	CGCG	1 cut(s)	547
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	319, 577
BshVI	ATCGAT	1 cut(s)	777
BslI	CCNNNNNNNGG	2 cut(s)	20, 217
BsmAI	GTCTC	2 cut(s)	427, 733
BsmI	GAATGC	1 cut(s)	637
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	755
Bsp143I	GATC	8 cut(s)	58, 89, 118, 166, 375, 552, 774, 931
BspACI	CCGC	5 cut(s)	157, 199, 355, 358, 547
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	865
BspDI	ATCGAT	1 cut(s)	777
BspFNI	CGCG	1 cut(s)	547
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	5 cut(s)	60, 91, 103, 321, 579
BspMAI	CTGCAG	1 cut(s)	511
BspOI	GCTAGC	1 cut(s)	924
BspT104I	TTCGAA	1 cut(s)	755
BspT107I	GGYRCC	2 cut(s)	319, 577
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	657
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	556, 702
BssMI	GATC	8 cut(s)	58, 89, 118, 166, 375, 552, 774, 931
Bst4CI	ACNGT	2 cut(s)	809, 854
Bst6I	CTCTTC	3 cut(s)	167, 243, 390
BstBI	TTCGAA	1 cut(s)	755
BstC8I	GCNNGC	5 cut(s)	231, 297, 423, 822, 922
BstDEI	CTNAG	1 cut(s)	873
BstF5I	GGATG	3 cut(s)	196, 343, 681
BstFNI	CGCG	1 cut(s)	547
BstH2I	RGCGCY	2 cut(s)	245, 422
BstHHI	GCGC	4 cut(s)	244, 421, 427, 547
BstKTI	GATC	8 cut(s)	61, 92, 121, 169, 378, 555, 777, 934
BstMAI	GTCTC	2 cut(s)	427, 733
BstMBI	GATC	8 cut(s)	58, 89, 118, 166, 375, 552, 774, 931
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 292, 352, 355, 422
BstNSI	RCATGY	1 cut(s)	824
BstSCI	CCNGG	2 cut(s)	13, 333
BstSFI	CTRYAG	2 cut(s)	300, 507
BstUI	CGCG	1 cut(s)	547
BstV1I	GCAGC	6 cut(s)	244, 247, 333, 428, 493, 832
BstX2I	RGATCY	6 cut(s)	58, 89, 118, 375, 552, 931
BstYI	RGATCY	6 cut(s)	58, 89, 118, 375, 552, 931
Bsu15I	ATCGAT	1 cut(s)	777
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	777
BtsCI	GGATG	3 cut(s)	196, 343, 681
BtsI	GCAGTG	2 cut(s)	455, 465
BtsIMutI	CAGTG	2 cut(s)	455, 465
Cac8I	GCNNGC	5 cut(s)	231, 297, 423, 822, 922
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	4 cut(s)	244, 421, 427, 547
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	196
ClaI	ATCGAT	1 cut(s)	777
CseI	GACGC	1 cut(s)	119
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	3 cut(s)	662, 761, 821
DdeI	CTNAG	1 cut(s)	873
DpnI	GATC	8 cut(s)	60, 91, 120, 168, 377, 554, 776, 933
DpnII	GATC	8 cut(s)	58, 89, 118, 166, 375, 552, 774, 931
DriI	GACNNNNNGTC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	167, 243, 390
Eam1105I	GACNNNNNGTC	1 cut(s)	129
EarI	CTCTTC	3 cut(s)	167, 243, 390
EciI	GGCGGA	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	196
Eco47III	AGCGCT	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	637
FaeI	CATG	3 cut(s)	665, 764, 824
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FatI	CATG	3 cut(s)	661, 760, 820
FauI	CCCGC	1 cut(s)	540
Fnu4HI	GCNGC	7 cut(s)	258, 261, 347, 356, 417, 507, 846
FokI	GGATG	3 cut(s)	203, 350, 688
Fsp4HI	GCNGC	7 cut(s)	258, 261, 347, 356, 417, 507, 846
FspBI	CTAG	4 cut(s)	245, 723, 746, 921
GlaI	GCGC	4 cut(s)	243, 420, 426, 546
GluI	GCNGC	7 cut(s)	258, 261, 347, 356, 417, 507, 846
GsuI	CTGGAG	1 cut(s)	674
HaeII	RGCGCY	2 cut(s)	245, 422
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	4 cut(s)	244, 421, 427, 547
Hin1II	CATG	3 cut(s)	665, 764, 824
Hin6I	GCGC	4 cut(s)	242, 419, 425, 545
HinP1I	GCGC	4 cut(s)	242, 419, 425, 545
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	7 cut(s)	28, 221, 251, 276, 463, 532, 757
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	7 cut(s)	123, 171, 281, 369, 407, 703, 860
Hpy188III	TCNNGA	4 cut(s)	87, 134, 662, 736
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	2 cut(s)	760, 822
HpyCH4III	ACNGT	2 cut(s)	809, 854
HpyCH4V	TGCA	8 cut(s)	458, 488, 509, 606, 635, 785, 824, 955
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 292, 352, 355, 422
HpyF3I	CTNAG	1 cut(s)	873
Hsp92II	CATG	3 cut(s)	665, 764, 824
HspAI	GCGC	4 cut(s)	242, 419, 425, 545
KroI	GCCGGC	1 cut(s)	421
KroNI	GCCGGC	1 cut(s)	423
Kzo9I	GATC	8 cut(s)	58, 89, 118, 166, 375, 552, 774, 931
Lsp1109I	GCAGC	6 cut(s)	244, 247, 333, 428, 493, 832
LweI	GCATC	1 cut(s)	644
MaeI	CTAG	4 cut(s)	245, 723, 746, 921
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	8 cut(s)	60, 91, 120, 168, 377, 554, 776, 933
MboI	GATC	8 cut(s)	58, 89, 118, 166, 375, 552, 774, 931
MboII	GAAGA	3 cut(s)	184, 260, 407
MflI	RGATCY	6 cut(s)	58, 89, 118, 375, 552, 931
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	215, 260
MmeI	TCCRAC	3 cut(s)	99, 146, 495
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	637
MreI	CGCCGGCG	1 cut(s)	421
MroNI	GCCGGC	1 cut(s)	421
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	566, 611
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	15, 335
Mva1269I	GAATGC	1 cut(s)	637
MvnI	CGCG	1 cut(s)	547
MwoI	GCNNNNNNNGC	5 cut(s)	239, 292, 352, 355, 422
NaeI	GCCGGC	1 cut(s)	423
NciI	CCSGG	2 cut(s)	15, 335
NdeII	GATC	8 cut(s)	58, 89, 118, 166, 375, 552, 774, 931
NgoMIV	GCCGGC	1 cut(s)	421
NheI	GCTAGC	1 cut(s)	920
NlaIII	CATG	3 cut(s)	665, 764, 824
NlaIV	GGNNCC	5 cut(s)	60, 91, 103, 321, 579
NmeAIII	GCCGAG	1 cut(s)	537
NsiI	ATGCAT	1 cut(s)	637
NspI	RCATGY	1 cut(s)	824
NspV	TTCGAA	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	824
PagI	TCATGA	1 cut(s)	661
PctI	GAATGC	1 cut(s)	637
PdiI	GCCGGC	1 cut(s)	423
PfeI	GAWTC	5 cut(s)	28, 276, 463, 532, 757
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	7 cut(s)	259, 262, 348, 357, 418, 508, 847
PleI	GAGTC	2 cut(s)	215, 259
PpsI	GAGTC	2 cut(s)	215, 259
PspN4I	GGNNCC	5 cut(s)	60, 91, 103, 321, 579
PspPI	GGNCC	1 cut(s)	196
PsrI	GAACNNNNNNTAC	2 cut(s)	294, 326
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	6 cut(s)	58, 89, 118, 375, 552, 931
RseI	CAYNNNNRTG	2 cut(s)	566, 611
SatI	GCNGC	7 cut(s)	258, 261, 347, 356, 417, 507, 846
Sau3AI	GATC	8 cut(s)	58, 89, 118, 166, 375, 552, 774, 931
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	215, 260
ScrFI	CCNGG	2 cut(s)	15, 335
SfaNI	GCATC	1 cut(s)	644
SfcI	CTRYAG	2 cut(s)	300, 507
SfuI	TTCGAA	1 cut(s)	755
SgrAI	CRCCGGYG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	566, 611
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SphI	GCATGC	1 cut(s)	824
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	5 cut(s)	157, 199, 355, 358, 547
SspMI	CTAG	4 cut(s)	245, 723, 746, 921
StyD4I	CCNGG	2 cut(s)	13, 333
TaaI	ACNGT	2 cut(s)	809, 854
TaqI	TCGA	4 cut(s)	133, 735, 755, 777
TasI	AATT	1 cut(s)	7
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	5 cut(s)	28, 276, 463, 532, 757
TscAI	CASTG	2 cut(s)	455, 465
TseI	GCWGC	6 cut(s)	257, 260, 346, 416, 506, 845
TspDTI	ATGAA	3 cut(s)	408, 635, 678
TspRI	CASTG	2 cut(s)	455, 465
VpaK11BI	GGWCC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	824
XspI	CTAG	4 cut(s)	245, 723, 746, 921
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.