FvH4_2g00852

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
891564 .. 894910
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00852.t1

Sequence Viewer

Length: 228 bp
ATGGAGTCCTCAATCTCCTCCGTTTCAACCTCTTCAAAATCCAAACGCCTCTTATTTGACCGCCGTTACGGTTGGGTAATTGATGAATGGAAAGACCCATCGGAGGAAGCTCTGGCCGGTGGCCGTGGAATGTTTTGCATACTGCCTATAGCGAAAGCTGCCGTAAAGATGGCTTCAGAGTCGGTTAGTCTTGCAGCAAACTCAGTAGTAATTAGTAAAAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.06

Weight (kDa)

8.93

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21195 AT2G21195 AT2G21195 AT2G21195
fragaria_vesca FvH4_2g00852
malus_domestica MD05G1004000.v1.1
prunus_persica Prupe.8G007200_v2.0.a1
pyrus_communis pycom05g00350
rosa_chinensis RchiOBHm_Chr6g0251251
rosa_laevigata RLG00000015470
rosa_multiflora Rmu_sc0015396.1_g000005
rosa_roxburghii Rroxscaffold_7G00216880
rosa_rugosa Rorug05G0501200
rosa_samantha Rh6AG010600 Rh6BG001400 Rh6CG007600 Rh6DG008000
rosa_wichuraiana Rw6G001200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AcoI YGGCCR 2 cut(s) 114, 121
AcuI CTGAAG 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 2 cut(s) 27, 36
AluBI AGCT 3 cut(s) 110, 158, 222
AluI AGCT 3 cut(s) 110, 158, 222
AoxI GGCC 2 cut(s) 114, 121
ApeKI GCWGC 2 cut(s) 158, 194
BbvI GCAGC 2 cut(s) 145, 206
BccI CCATC 2 cut(s) 106, 163
BceAI ACGGC 3 cut(s) 48, 108, 146
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 159, 195
BlsI GCNGC 2 cut(s) 160, 196
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 2 cut(s) 145, 206
BshFI GGCC 2 cut(s) 116, 123
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 103
BsnI GGCC 2 cut(s) 116, 123
BspACI CCGC 1 cut(s) 61
BspANI GGCC 2 cut(s) 116, 123
BspCNI CTCAG 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 202
BstDSI CCRYGG 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 145, 206
BsuRI GGCC 2 cut(s) 116, 123
BtgI CCRYGG 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 116
CviJI RGCY 6 cut(s) 110, 116, 123, 158, 173, 222
CviKI_1 RGCY 6 cut(s) 110, 116, 123, 158, 173, 222
DdeI CTNAG 1 cut(s) 202
EaeI YGGCCR 2 cut(s) 114, 121
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 159
FaiI YATR 2 cut(s) 140, 149
Fnu4HI GCNGC 2 cut(s) 159, 195
Fsp4HI GCNGC 2 cut(s) 159, 195
GluI GCNGC 2 cut(s) 159, 195
HaeIII GGCC 2 cut(s) 116, 123
HapII CCGG 1 cut(s) 117
HinfI GANTC 2 cut(s) 5, 179
HpaII CCGG 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 103, 178
Hpy188III TCNNGA 1 cut(s) 225
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 138, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 202
LpnPI CCDG 2 cut(s) 98, 130
Lsp1109I GCAGC 2 cut(s) 145, 206
MaeIII GTNAC 1 cut(s) 65
MboII GAAGA 1 cut(s) 24
MluCI AATT 2 cut(s) 78, 210
MlyI GAGTC 2 cut(s) 14, 188
MnlI CCTC 5 cut(s) 19, 28, 40, 59, 97
MspI CCGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 160, 196
PleI GAGTC 2 cut(s) 13, 187
PpsI GAGTC 2 cut(s) 13, 187
SatI GCNGC 2 cut(s) 159, 195
SchI GAGTC 2 cut(s) 14, 188
SetI ASST 4 cut(s) 32, 112, 160, 224
SfcI CTRYAG 1 cut(s) 147
SgeI CNNG 4 cut(s) 125, 129, 137, 203
Sse9I AATT 2 cut(s) 78, 210
SsiI CCGC 1 cut(s) 61
TaaI ACNGT 1 cut(s) 71
TasI AATT 2 cut(s) 78, 210
TseI GCWGC 2 cut(s) 158, 194
TspDTI ATGAA 1 cut(s) 99
TspGWI ACGGA 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.