pycom05g00350

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
396154 .. 397170
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g00350.1

Sequence Viewer

Length: 231 bp
ATGGGCCAGAGAGAGATAATGGAGTCCTCGGCTGCTTCCTCACTCTCCGTTACAGCGTCCTCAAATTCGCCTTCCAAACGCCTTTTGTTCGACCGCCGTTACGGTTGGGTAATTGATGAATTGAAAGACCCATCAGAGGAAGCTCTTGCCGGTGGCCGAGGGATGTTTTGCATACTGCCGCTTGCAAAAACTTTGATCAAGATGGCTTCCCAATCGGCTGGGCAGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.26

Weight (kDa)

7.9

Isoelectric Point (pI)

67.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21195 AT2G21195 AT2G21195 AT2G21195
fragaria_vesca FvH4_2g00852
malus_domestica MD05G1004000.v1.1
prunus_persica Prupe.8G007200_v2.0.a1
pyrus_communis pycom05g00350
rosa_chinensis RchiOBHm_Chr6g0251251
rosa_laevigata RLG00000015470
rosa_multiflora Rmu_sc0015396.1_g000005
rosa_roxburghii Rroxscaffold_7G00216880
rosa_rugosa Rorug05G0501200
rosa_samantha Rh6AG010600 Rh6BG001400 Rh6CG007600 Rh6DG008000
rosa_wichuraiana Rw6G001200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 94, 179
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AoxI GGCC 2 cut(s) 4, 154
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 19
BccI CCATC 2 cut(s) 139, 196
BceAI ACGGC 1 cut(s) 81
BclI TGATCA 1 cut(s) 195
BisI GCNGC 2 cut(s) 33, 179
BlsI GCNGC 2 cut(s) 34, 180
BmgT120I GGNCC 1 cut(s) 4
BsaJI CCNNGG 2 cut(s) 27, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 27, 157
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 2 cut(s) 6, 156
BsiEI CGRYCG 1 cut(s) 94
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 136
BsnI GGCC 2 cut(s) 6, 156
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 2 cut(s) 94, 179
BspANI GGCC 2 cut(s) 6, 156
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 2 cut(s) 27, 157
BssMI GATC 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 183
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstMCI CGRYCG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 218
BsuRI GGCC 2 cut(s) 6, 156
BtsCI GGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 45
CviJI RGCY 6 cut(s) 6, 32, 143, 156, 206, 218
CviKI_1 RGCY 6 cut(s) 6, 32, 143, 156, 206, 218
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 154
FaiI YATR 1 cut(s) 173
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 33, 179
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 2 cut(s) 33, 179
GluI GCNGC 2 cut(s) 33, 179
GsaI CCCAGC 1 cut(s) 222
HaeIII GGCC 2 cut(s) 6, 156
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 45
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 171, 185
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 3 cut(s) 20, 163, 204
Lsp1109I GCAGC 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 49, 98
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MluCI AATT 3 cut(s) 64, 111, 119
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 5 cut(s) 37, 49, 70, 130, 152
MspI CCGG 1 cut(s) 150
NdeII GATC 1 cut(s) 195
NmeAIII GCCGAG 2 cut(s) 8, 182
PkrI GCNGC 2 cut(s) 34, 180
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 4
SatI GCNGC 2 cut(s) 33, 179
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 32
SetI ASST 1 cut(s) 145
SgeI CNNG 7 cut(s) 19, 40, 158, 162, 170, 194, 211
Sse9I AATT 3 cut(s) 64, 111, 119
SsiI CCGC 2 cut(s) 94, 179
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 1 cut(s) 90
TasI AATT 3 cut(s) 64, 111, 119
TauI GCSGC 1 cut(s) 181
TscAI CASTG 1 cut(s) 230
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 132
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 230
XapI RAATTY 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.