RchiOBHm_Chr6g0251251

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
6548670 .. 6550854
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22525

Sequence Viewer

Length: 411 bp
ATGGAGTCCACAACCTCCTCAGTCTCCGTTTCTACCTCCTCAAAATCCAAATGCCTTTTATTTGACCGCCGTTACGGTTGGGTAATTGATGAATGGAAAGACCCATCGGAGGAAGCTCTGGCCGGTGGCCGTGGAATGTTTTGCGTACTGCCTCTAGCAAAAGCTGCGATAAAGATGGCTTCACAGTCGATTAGTCTTGCAGCAAGCTCTGCAGTAAAAGCTCTTGAAAAGCCAGAACTATTTTCACCTCAGCTACTGCAAGCTAGTGTAAATGATCAGCTTCACAAAATCACATCTTCTTTGCCAAAGCCAGACTTGAACTATTTATTACTCAAAGGAAATTTGTCTCAAGCTGCCAGTTCCTCATCTTCATGTGAACAACTAGAAAGCAGTAATTCGCAGATGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.57

Weight (kDa)

6.56

Isoelectric Point (pI)

56.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21195 AT2G21195 AT2G21195 AT2G21195
fragaria_vesca FvH4_2g00852
malus_domestica MD05G1004000.v1.1
prunus_persica Prupe.8G007200_v2.0.a1
pyrus_communis pycom05g00350
rosa_chinensis RchiOBHm_Chr6g0251251
rosa_laevigata RLG00000015470
rosa_multiflora Rmu_sc0015396.1_g000005
rosa_roxburghii Rroxscaffold_7G00216880
rosa_rugosa Rorug05G0501200
rosa_samantha Rh6AG010600 Rh6BG001400 Rh6CG007600 Rh6DG008000
rosa_wichuraiana Rw6G001200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 67
AcoI YGGCCR 2 cut(s) 120, 127
AcsI RAATTY 1 cut(s) 340
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 2 cut(s) 227, 319
AluBI AGCT 8 cut(s) 116, 164, 207, 221, 253, 263, 280, 353
AluI AGCT 8 cut(s) 116, 164, 207, 221, 253, 263, 280, 353
Alw26I GTCTC 2 cut(s) 28, 351
AlwNI CAGNNNCTG 1 cut(s) 256
AoxI GGCC 2 cut(s) 120, 127
ApeKI GCWGC 3 cut(s) 164, 200, 353
ApoI RAATTY 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 151, 212, 340
BccI CCATC 2 cut(s) 112, 169
BceAI ACGGC 2 cut(s) 54, 114
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 28, 351
BfaI CTAG 3 cut(s) 155, 264, 383
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 3 cut(s) 165, 201, 354
BlsI GCNGC 3 cut(s) 166, 202, 355
Bpu10I CCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 33, 263
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 2 cut(s) 7, 28
BseXI GCAGC 3 cut(s) 151, 212, 340
BshFI GGCC 2 cut(s) 122, 129
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 28, 351
BsnI GGCC 2 cut(s) 122, 129
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 1 cut(s) 67
BspANI GGCC 2 cut(s) 122, 129
BspCNI CTCAG 2 cut(s) 32, 262
BspMAI CTGCAG 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 274
Bst4CI ACNGT 2 cut(s) 77, 186
BstAPI GCANNNNNTGC 2 cut(s) 164, 209
BstC8I GCNNGC 2 cut(s) 205, 261
BstDEI CTNAG 3 cut(s) 19, 249, 408
BstDSI CCRYGG 1 cut(s) 130
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 2 cut(s) 28, 351
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 3 cut(s) 164, 209, 218
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 3 cut(s) 151, 212, 340
BsuRI GGCC 2 cut(s) 122, 129
BtgI CCRYGG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 205, 261
CaiI CAGNNNCTG 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 122
Csp6I GTAC 1 cut(s) 146
CviAII CATG 1 cut(s) 372
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 3 cut(s) 19, 249, 408
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
EaeI YGGCCR 2 cut(s) 120, 127
FaeI CATG 1 cut(s) 375
FaiI YATR 1 cut(s) 373
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 1 cut(s) 371
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 165, 201, 354
Fsp4HI GCNGC 3 cut(s) 165, 201, 354
FspBI CTAG 3 cut(s) 155, 264, 383
GluI GCNGC 3 cut(s) 165, 201, 354
HaeIII GGCC 2 cut(s) 122, 129
HapII CCGG 1 cut(s) 123
Hin1II CATG 1 cut(s) 375
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 237
Hpy166II GTNNAC 2 cut(s) 9, 377
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 2 cut(s) 9, 377
HpyCH4III ACNGT 2 cut(s) 77, 186
HpyCH4V TGCA 3 cut(s) 200, 212, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 209, 218
HpyF3I CTNAG 3 cut(s) 19, 249, 408
Hsp92II CATG 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 5 cut(s) 104, 136, 246, 324, 370
Lsp1109I GCAGC 3 cut(s) 151, 212, 340
MaeI CTAG 3 cut(s) 155, 264, 383
MaeIII GTNAC 1 cut(s) 71
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 2 cut(s) 288, 360
MluCI AATT 3 cut(s) 84, 340, 394
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 8 cut(s) 25, 28, 46, 49, 103, 162, 258, 373
MslI CAYNNNNRTG 1 cut(s) 370
MspI CCGG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 164, 209, 218
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 375
PkrI GCNGC 3 cut(s) 166, 202, 355
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PstI CTGCAG 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 256
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 370
SatI GCNGC 3 cut(s) 165, 201, 354
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 3 cut(s) 84, 340, 394
SsiI CCGC 1 cut(s) 67
SspMI CTAG 3 cut(s) 155, 264, 383
TaaI ACNGT 2 cut(s) 77, 186
TaqI TCGA 1 cut(s) 188
TasI AATT 3 cut(s) 84, 340, 394
TseI GCWGC 3 cut(s) 164, 200, 353
TspDTI ATGAA 2 cut(s) 105, 360
TspGWI ACGGA 1 cut(s) 16
XapI RAATTY 1 cut(s) 340
XspI CTAG 3 cut(s) 155, 264, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.