Rorug05G0501200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013362
Physical Location & Seq
Reverse (-)
68247231 .. 68249332
2102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0501200.1

Sequence Viewer

Length: 615 bp
ATGGCTAGAACGACGTCGTTGCTGCTCTGTACTCTGGTCCTTTTCGGAGCCCTAGCTCTAATTGAGGCAAAGAAATCCAAGGAGGATCTGAAGGAAGTGACCTCCAAGGTTTACTTCGATGTTGAAATTGCTGGGAAGCCTGCTGGTCGTATTGTCATGGGACTCTTTGGGAAGGCTGTTCCTAAGACGGCAGAAAATTTCCGAGCTCTTTGCACAGGGGAGAAAGGCATTGGAAAGAGCGGAAAACCTCTCCATTACAAGGGTAGCAAATTTCACAGGATTATTCCCAGCTTCATGCTTCAGGGAGGCGATTTCACTCTCGGTGACGGAAGAGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGATGAGAATTTCAAGTTGAAGCATACTGGACCAGGGTTTTTGTCGATGGCAAATGCTGGGCCAGACACCAATGGTTCACAATTCTTCATCACCACTGTGACAACTAGCTGGTTGGATGGCAGACATGTCGTATTTGGAAAGGTGCTGTCTGGCATGGATGTGGTTTACAAGGTTGAAGCTGAAGGAAGTCAGGGTGGAACACCCAAGAGCAAAGTTGTGATCGCTGACAGTGGCGAACTTCCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

21.77

Weight (kDa)

9.13

Isoelectric Point (pI)

13.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 38 - 198 8.4e-47 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013362)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21195 AT2G21195 AT2G21195 AT2G21195
fragaria_vesca FvH4_2g00852
malus_domestica MD05G1004000.v1.1
prunus_persica Prupe.8G007200_v2.0.a1
pyrus_communis pycom05g00350
rosa_chinensis RchiOBHm_Chr6g0251251
rosa_laevigata RLG00000015470
rosa_multiflora Rmu_sc0015396.1_g000005
rosa_roxburghii Rroxscaffold_7G00216880
rosa_rugosa Rorug05G0501200
rosa_samantha Rh6AG010600 Rh6BG001400 Rh6CG007600 Rh6DG008000
rosa_wichuraiana Rw6G001200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 240
AciI CCGC 1 cut(s) 240
AclWI GGATC 1 cut(s) 93
AcsI RAATTY 3 cut(s) 196, 269, 373
AcuI CTGAAG 3 cut(s) 110, 284, 567
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 490
AgsI TTSAA 4 cut(s) 125, 379, 385, 542
AjnI CCWGG 1 cut(s) 397
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AleI CACNNNNGTG 1 cut(s) 461
AluBI AGCT 5 cut(s) 56, 206, 291, 474, 545
AluI AGCT 5 cut(s) 56, 206, 291, 474, 545
Alw21I GWGCWC 1 cut(s) 208
AlwI GGATC 1 cut(s) 93
AoxI GGCC 1 cut(s) 425
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 3 cut(s) 196, 269, 373
AspS9I GGNCC 3 cut(s) 37, 395, 425
AsuHPI GGTGA 2 cut(s) 335, 448
AvaII GGWCC 2 cut(s) 37, 395
BanII GRGCYC 2 cut(s) 52, 208
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 9
BccI CCATC 2 cut(s) 406, 476
BceAI ACGGC 1 cut(s) 204
BcgI CGANNNNNNTGC 5 cut(s) 35, 192, 226, 475, 509
BciT130I CCWGG 1 cut(s) 399
BfaI CTAG 3 cut(s) 6, 53, 471
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 2 cut(s) 37, 395
BmgT120I GGNCC 3 cut(s) 37, 395, 425
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 78, 105, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 397
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 3 cut(s) 78, 105, 398
BseGI GGATG 2 cut(s) 487, 529
BseLI CCNNNNNNNGG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 9
BseYI CCCAGC 3 cut(s) 131, 287, 422
BshFI GGCC 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 208
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 1 cut(s) 427
Bsp1286I GDGCHC 2 cut(s) 52, 208
Bsp143I GATC 2 cut(s) 85, 585
BspACI CCGC 1 cut(s) 240
BspANI GGCC 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 1 cut(s) 93
BsrBI CCGCTC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 3 cut(s) 78, 105, 398
BssMI GATC 2 cut(s) 85, 585
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 78, 105
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 463, 596
Bst6I CTCTTC 1 cut(s) 325
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 487, 529
BstKTI GATC 2 cut(s) 88, 588
BstMBI GATC 2 cut(s) 85, 585
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 1 cut(s) 427
BtsCI GGATG 2 cut(s) 487, 529
BtsIMutI CAGTG 2 cut(s) 459, 601
Cac8I GCNNGC 1 cut(s) 141
Cfr13I GGNCC 3 cut(s) 37, 395, 425
Csp6I GTAC 1 cut(s) 30
CviAII CATG 4 cut(s) 157, 295, 491, 520
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 87, 587
DpnII GATC 2 cut(s) 85, 585
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Ecl136II GAGCTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 78, 105
Eco24I GRGCYC 2 cut(s) 52, 208
Eco47I GGWCC 2 cut(s) 37, 395
Eco53kI GAGCTC 1 cut(s) 206
Eco57I CTGAAG 3 cut(s) 110, 284, 567
EcoICRI GAGCTC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 78, 105
EcoT38I GRGCYC 2 cut(s) 52, 208
ErhI CCWWGG 2 cut(s) 78, 105
FaeI CATG 4 cut(s) 160, 298, 494, 523
FaiI YATR 6 cut(s) 158, 296, 351, 390, 492, 521
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 1 cut(s) 174
FatI CATG 4 cut(s) 156, 294, 490, 519
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 2 cut(s) 494, 536
FriOI GRGCYC 2 cut(s) 52, 208
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 3 cut(s) 6, 53, 471
GluI GCNGC 1 cut(s) 23
GsaI CCCAGC 3 cut(s) 135, 291, 426
HaeIII GGCC 1 cut(s) 427
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 4 cut(s) 160, 298, 494, 523
HinfI GANTC 2 cut(s) 162, 341
HphI GGTGA 2 cut(s) 335, 448
Hpy166II GTNNAC 3 cut(s) 112, 443, 532
Hpy188I TCNGA 3 cut(s) 47, 90, 203
Hpy8I GTNNAC 3 cut(s) 112, 443, 532
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 3 cut(s) 85, 166, 542
HpyCH4III ACNGT 2 cut(s) 463, 596
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 4 cut(s) 160, 298, 494, 523
Kzo9I GATC 2 cut(s) 85, 585
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 9
MaeI CTAG 3 cut(s) 6, 53, 471
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 3 cut(s) 97, 323, 463
MalI GATC 2 cut(s) 87, 587
MbiI CCGCTC 1 cut(s) 240
MboI GATC 2 cut(s) 85, 585
MboII GAAGA 2 cut(s) 342, 442
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 52, 208
MluCI AATT 7 cut(s) 60, 126, 196, 269, 345, 373, 446
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 6 cut(s) 58, 76, 112, 258, 299, 326
MseI TTAA 1 cut(s) 613
MslI CAYNNNNRTG 2 cut(s) 461, 524
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
NdeII GATC 2 cut(s) 85, 585
NlaIII CATG 4 cut(s) 160, 298, 494, 523
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 3 cut(s) 97, 323, 463
NspI RCATGY 1 cut(s) 494
OliI CACNNNNGTG 1 cut(s) 461
PciI ACATGT 1 cut(s) 490
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PscI ACATGT 1 cut(s) 490
Psp124BI GAGCTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 3 cut(s) 131, 287, 422
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 3 cut(s) 37, 395, 425
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
RseI CAYNNNNRTG 2 cut(s) 461, 524
SacI GAGCTC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 613
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 2 cut(s) 85, 585
Sau96I GGNCC 3 cut(s) 37, 395, 425
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 2 cut(s) 52, 208
SinI GGWCC 2 cut(s) 37, 395
SmiMI CAYNNNNRTG 2 cut(s) 461, 524
Sse9I AATT 7 cut(s) 60, 126, 196, 269, 345, 373, 446
SsiI CCGC 1 cut(s) 240
SspMI CTAG 3 cut(s) 6, 53, 471
SstI GAGCTC 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 2 cut(s) 78, 105
TaaI ACNGT 2 cut(s) 463, 596
TaiI ACGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 117, 410
TasI AATT 7 cut(s) 60, 126, 196, 269, 345, 373, 446
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 613
Tru9I TTAA 1 cut(s) 613
TscAI CASTG 2 cut(s) 466, 601
TseFI GTSAC 3 cut(s) 97, 323, 463
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 3 cut(s) 97, 323, 463
TspDTI ATGAA 2 cut(s) 283, 442
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 2 cut(s) 466, 601
VpaK11BI GGWCC 2 cut(s) 37, 395
XapI RAATTY 3 cut(s) 196, 269, 373
XceI RCATGY 1 cut(s) 494
XspI CTAG 3 cut(s) 6, 53, 471
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.