Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013362

Physical Location & Seq

Genomic Coordinates Forward (+)

1255771 .. 1258057

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1004000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCGTCCTCGGCTGCTTCCTCACTCTCCGTTACAGCGTCCTCAAATTCGCCTTCCAAACGCCTTTTGTTCGACCGCCGTTACGGTTGGGTAATTGATGACTTGAAAGACCCATCAGAGGAAGCTCTTGCTGGTGGCCGAGGGATGTTTTGCATACTGCCGCTTGCAAAAACTTTGATTAAGATGGCTTCGCATTCGATTAATGGTGCAGCAAACTCAGCAGTGAAAGCTTTTGAAAGGCCAGACCTGCTTTCTCCGCAGCAACTGCAAGCGGGTCTTTACAACGAGCTCCACAAAATTAAGTCTTCTTTGGTAAAACCGGAATTGAACCATTTGTTACTCAAAGGAAATCTCTCGTCAAAAGAGGCCAGTTGCTCTTCTAGTAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

13.89

Weight (kDa)

9.39

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21195 AT2G21195 AT2G21195 AT2G21195
fragaria_vesca	FvH4_2g00852
malus_domestica	MD05G1004000.v1.1
prunus_persica	Prupe.8G007200_v2.0.a1
pyrus_communis	pycom05g00350
rosa_chinensis	RchiOBHm_Chr6g0251251
rosa_laevigata	RLG00000015470
rosa_multiflora	Rmu_sc0015396.1_g000005
rosa_roxburghii	Rroxscaffold_7G00216880
rosa_rugosa	Rorug05G0501200
rosa_samantha	Rh6AG010600 Rh6BG001400 Rh6CG007600 Rh6DG008000
rosa_wichuraiana	Rw6G001200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
AciI	CCGC	4 cut(s)	76, 161, 257, 272
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	106, 236, 328
AluBI	AGCT	3 cut(s)	125, 230, 289
AluI	AGCT	3 cut(s)	125, 230, 289
Alw21I	GWGCWC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	265
AoxI	GGCC	3 cut(s)	136, 239, 366
ApeKI	GCWGC	3 cut(s)	14, 209, 259
ApoI	RAATTY	1 cut(s)	46
AseI	ATTAAT	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	221, 271
BccI	CCATC	2 cut(s)	121, 178
BceAI	ACGGC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	4 cut(s)	15, 161, 210, 260
BlsI	GCNGC	4 cut(s)	16, 162, 211, 261
BpiI	GAAGAC	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	9, 139
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	9, 139
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	221, 271
BsgI	GTGCAG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	138, 241, 368
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	138, 241, 368
Bsp1286I	GDGCHC	1 cut(s)	291
BspACI	CCGC	4 cut(s)	76, 161, 257, 272
BspANI	GGCC	3 cut(s)	138, 241, 368
BspCNI	CTCAG	1 cut(s)	230
BspMI	ACCTGC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	9, 139
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	382
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	165, 270
BstDEI	CTNAG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	150
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 218, 227, 247, 256, 265
BstV1I	GCAGC	2 cut(s)	221, 271
BstV2I	GAAGAC	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	138, 241, 368
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	165, 270
CaiI	CAGNNNCTG	1 cut(s)	265
CseI	GACGC	1 cut(s)	27
CviJI	RGCY	8 cut(s)	14, 125, 138, 188, 230, 241, 289, 368
CviKI_1	RGCY	8 cut(s)	14, 125, 138, 188, 230, 241, 289, 368
DdeI	CTNAG	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	291
FaiI	YATR	2 cut(s)	155, 391
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	15, 161, 210, 260
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	4 cut(s)	15, 161, 210, 260
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	4 cut(s)	15, 161, 210, 260
HaeIII	GGCC	3 cut(s)	138, 241, 368
HapII	CCGG	1 cut(s)	320
HgaI	GACGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	228
HpaII	CCGG	1 cut(s)	320
Hpy188I	TCNGA	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	4 cut(s)	153, 167, 209, 268
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 218, 227, 247, 256, 265
HpyF3I	CTNAG	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	5
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	5 cut(s)	117, 255, 260, 333, 382
Lsp1109I	GCAGC	2 cut(s)	221, 271
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	3 cut(s)	31, 80, 336
MboII	GAAGA	2 cut(s)	297, 369
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	4 cut(s)	46, 93, 297, 323
MnlI	CCTC	6 cut(s)	19, 31, 52, 112, 134, 358
MseI	TTAA	3 cut(s)	180, 201, 300
MspI	CCGG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	193
MwoI	GCNNNNNNNGC	6 cut(s)	11, 218, 227, 247, 256, 265
NmeAIII	GCCGAG	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	382
PctI	GAATGC	1 cut(s)	193
PkrI	GCNGC	4 cut(s)	16, 162, 211, 261
PshBI	ATTAAT	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	180, 201, 300
SatI	GCNGC	4 cut(s)	15, 161, 210, 260
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	4 cut(s)	127, 232, 249, 291
Sse9I	AATT	4 cut(s)	46, 93, 297, 323
SsiI	CCGC	4 cut(s)	76, 161, 257, 272
SspMI	CTAG	1 cut(s)	381
SstI	GAGCTC	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	72, 197
TasI	AATT	4 cut(s)	46, 93, 297, 323
TauI	GCSGC	1 cut(s)	163
Tru1I	TTAA	3 cut(s)	180, 201, 300
Tru9I	TTAA	3 cut(s)	180, 201, 300
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	3 cut(s)	14, 209, 259
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	228
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	1 cut(s)	46
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.