FvH4_2g01080

Heparan-alpha-glucosaminide N-acetyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009646
Physical Location & Seq
Reverse (-)
1039542 .. 1045064
5523 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01080.t1

Sequence Viewer

Length: 1260 bp
ATGGCCGATTATGTCCTCATTCCAAACGGAGAAGAAGACCGTTCACCCCTCGCCGCCACTCCCAAGCCTCCACGTGTCGCCTCCCTCGATGTCTTCCGCGGCCTCTGCGTCTTCCTGATGATGGTGGTTGATTACGGCGGCTCGATTGTTCCGGCGATCGCACACTCGCCGTGGACCGGTCTCCATTTGGCTGACTTTGTGATGCCGTTTTTTCTCTTCATTGCCGGAGTTTCTCTCGCTTTGGTCTACAAGAGAGTGAGTAACAGAGTGGAGGCTACATGGAAGGCCGTGTTTCGTGCGGTTAAGCTCTTTCTGTTGGGCGTTCTTCTTCAAGGTGGTTATTTTCATGGAGTAGCTTCCTTGACTTTTGGAGTTGACATTGAAAGAATACGGTGGTTTGGAATTTTGCAGAGGATAGCCATTGGATATATGGTTGCAGCTTTATGCGAAATTTGGCTTTCACGTCGGACCTCGAGCGAAGTGGGGTTTTTCAGGAGCTATTACTGGCACTGGTGTGCCATCTTTCTGTTATCAGCAATATACAGTGGGTTGCTGTATGGTTTGTATGTTCCAGATTGGGAATTCAAAGCATCAACACCTACATATTTGACTCCCTCTAATGATAGTCATGTTTACGTGGTGAAATGTTCTATGAGAGGAGATCTTGGACCTGGTTGTAATTCTGCTGGGATGATTGATCGTTACATAGTGGGTGTTGATCATTTATATTCAAAACCTGTATACAGGAACCTGAAGGAGTGCAATATGTCTACTGGTGGTCGCATTCCAGAGAGTTCTCCTTCATGGTGTCATACACCTTTTGATCCTGAAGGTATATTAAGTACCCTAACGGCAGCAGTGACTTGCATAATTGGACTCCAGTACGGTCACATTCTTGCACACATACAGGACCACAAAGGGCGACTGAATATTTGGTCTCTGTTTTCAGTATCAATGTTTGTCCTCGGATCATTTCTCGCGTTCATAGGTGTTCCTGTAAATAAATCTCTGTACACGATCAGTTATCTGCTAATTACTTCAGCATCTGCGGGAATGACATTTTGTGCTCTATATCTGCTGATAGATGTTTACGGTTATCGGTGCATAACATTTGTGTTGGAGTGGATGGGCATACATTCTTTGAGTATTTTTATAGTTGTAACTTCCAATCTAGCTGTTATTGCGATTCAGGGATTCTACTGGACTCATCCTGAGAATAATATTGTTCACTGGATCATAACACCTTTTGTGCACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko04142 map00531 map01100 map04142
Pfam Domains
Protein Families
DUF1624

Protein Analysis

420

Amino Acids

46.86

Weight (kDa)

8.26

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 246, 741, 770
AccII CGCG 2 cut(s) 99, 980
AciI CCGC 6 cut(s) 54, 97, 99, 138, 299, 1049
AclWI GGATC 3 cut(s) 818, 976, 1241
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 402, 450, 581
AcuI CTGAAG 3 cut(s) 773, 849, 1023
AcvI CACGTG 1 cut(s) 74
AfaI GTAC 3 cut(s) 844, 884, 1013
AfiI CCNNNNNNNGG 2 cut(s) 121, 176
AflIII ACRYGT 1 cut(s) 73
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 4 cut(s) 332, 383, 586, 732
AjiI CACGTC 1 cut(s) 464
AjnI CCWGG 1 cut(s) 670
AleI CACNNNNGTG 1 cut(s) 513
AluBI AGCT 5 cut(s) 307, 356, 440, 498, 1175
AluI AGCT 5 cut(s) 307, 356, 440, 498, 1175
Alw21I GWGCWC 2 cut(s) 1069, 1254
Alw26I GTCTC 2 cut(s) 185, 942
Alw44I GTGCAC 1 cut(s) 1250
AlwI GGATC 3 cut(s) 818, 976, 1241
AlwNI CAGNNNCTG 1 cut(s) 1046
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 3 cut(s) 3, 100, 285
ApaLI GTGCAC 1 cut(s) 1250
ApeKI GCWGC 2 cut(s) 437, 854
ApoI RAATTY 3 cut(s) 402, 450, 581
ArsI GACNNNNNNTTYG 2 cut(s) 915, 947
AsiGI ACCGGT 1 cut(s) 176
AsiSI GCGATCGC 1 cut(s) 159
AspS9I GGNCC 4 cut(s) 174, 468, 668, 910
AsuHPI GGTGA 2 cut(s) 36, 652
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 4 cut(s) 174, 468, 668, 910
BaeGI GKGCMC 1 cut(s) 1254
BbrPI CACGTG 1 cut(s) 74
BbsI GAAGAC 3 cut(s) 42, 85, 103
Bbv12I GWGCWC 2 cut(s) 1069, 1254
BbvI GCAGC 2 cut(s) 449, 866
BccI CCATC 3 cut(s) 115, 527, 1120
BceAI ACGGC 5 cut(s) 151, 154, 190, 272, 867
BciT130I CCWGG 1 cut(s) 672
BclI TGATCA 1 cut(s) 718
BcoDI GTCTC 2 cut(s) 185, 942
BfaI CTAG 1 cut(s) 1172
BglII AGATCT 1 cut(s) 661
BisI GCNGC 5 cut(s) 54, 100, 139, 438, 855
BlsI GCNGC 5 cut(s) 55, 101, 140, 439, 856
Bme1390I CCNGG 1 cut(s) 672
Bme18I GGWCC 4 cut(s) 174, 468, 668, 910
BmeT110I CYCGRG 1 cut(s) 472
BmgBI CACGTC 1 cut(s) 464
BmgT120I GGNCC 4 cut(s) 174, 468, 668, 910
BmiI GGNNCC 1 cut(s) 749
BmrFI CCNGG 1 cut(s) 672
BmsI GCATC 3 cut(s) 192, 599, 1052
BpiI GAAGAC 3 cut(s) 42, 85, 103
BplI GAGNNNNNCTC 2 cut(s) 219, 251
BpmI CTGGAG 1 cut(s) 863
BsaAI YACGTR 2 cut(s) 74, 637
BsaI GGTCTC 2 cut(s) 185, 942
BsaJI CCNNGG 3 cut(s) 97, 170, 964
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 176
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 6 cut(s) 509, 515, 778, 880, 1205, 1235
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 3 cut(s) 97, 170, 964
BseGI GGATG 3 cut(s) 696, 1131, 1207
BseLI CCNNNNNNNGG 2 cut(s) 121, 176
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 1203
BseNI ACTGG 6 cut(s) 509, 515, 778, 880, 1205, 1235
BseRI GAGGAG 1 cut(s) 672
BseSI GKGCMC 1 cut(s) 1254
BseXI GCAGC 2 cut(s) 449, 866
BseYI CCCAGC 1 cut(s) 686
Bsh1236I CGCG 2 cut(s) 99, 980
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 3 cut(s) 5, 102, 287
BshTI ACCGGT 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 1069, 1254
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 3 cut(s) 152, 177, 225
BslI CCNNNNNNNGG 2 cut(s) 121, 176
BsmAI GTCTC 2 cut(s) 185, 942
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 3 cut(s) 5, 102, 287
Bso31I GGTCTC 2 cut(s) 185, 942
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 1069, 1254
Bsp1407I TGTACA 1 cut(s) 1011
Bsp143I GATC 8 cut(s) 156, 661, 697, 718, 823, 968, 1017, 1233
BspACI CCGC 6 cut(s) 54, 97, 99, 138, 299, 1049
BspANI GGCC 3 cut(s) 5, 102, 287
BspCNI CTCAG 1 cut(s) 1204
BspFNI CGCG 2 cut(s) 99, 980
BspLI GGNNCC 1 cut(s) 749
BspPI GGATC 3 cut(s) 818, 976, 1241
BspTNI GGTCTC 2 cut(s) 185, 942
BsrDI GCAATG 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 1011
BsrI ACTGG 6 cut(s) 509, 515, 778, 880, 1205, 1235
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 97, 170, 964
BssMI GATC 8 cut(s) 156, 661, 697, 718, 823, 968, 1017, 1233
BssNAI GTATAC 1 cut(s) 742
Bst1107I GTATAC 1 cut(s) 742
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 5 cut(s) 41, 393, 545, 887, 1094
Bst6I CTCTTC 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 1011
BstBAI YACGTR 2 cut(s) 74, 637
BstDEI CTNAG 1 cut(s) 1212
BstDSI CCRYGG 2 cut(s) 97, 170
BstF5I GGATG 3 cut(s) 696, 1131, 1207
BstFNI CGCG 2 cut(s) 99, 980
BstKTI GATC 8 cut(s) 159, 664, 700, 721, 826, 971, 1020, 1236
BstMAI GTCTC 2 cut(s) 185, 942
BstMBI GATC 8 cut(s) 156, 661, 697, 718, 823, 968, 1017, 1233
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 105, 1181
BstNI CCWGG 1 cut(s) 672
BstSCI CCNGG 1 cut(s) 670
BstSLI GKGCMC 1 cut(s) 1254
BstUI CGCG 2 cut(s) 99, 980
BstV1I GCAGC 2 cut(s) 449, 866
BstV2I GAAGAC 3 cut(s) 42, 85, 103
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BstZ17I GTATAC 1 cut(s) 742
BsuRI GGCC 3 cut(s) 5, 102, 287
BtgI CCRYGG 2 cut(s) 97, 170
BtrI CACGTC 1 cut(s) 464
BtsCI GGATG 3 cut(s) 696, 1131, 1207
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 4 cut(s) 508, 550, 864, 1228
CaiI CAGNNNCTG 1 cut(s) 1046
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 4 cut(s) 174, 468, 668, 910
Cfr42I CCGCGG 1 cut(s) 100
CseI GACGC 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 670
Csp6I GTAC 3 cut(s) 843, 883, 1012
CspAI ACCGGT 1 cut(s) 176
CviAII CATG 4 cut(s) 279, 347, 629, 804
CviQI GTAC 3 cut(s) 843, 883, 1012
DdeI CTNAG 1 cut(s) 1212
DpnI GATC 8 cut(s) 158, 663, 699, 720, 825, 970, 1019, 1235
DpnII GATC 8 cut(s) 156, 661, 697, 718, 823, 968, 1017, 1233
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco31I GGTCTC 2 cut(s) 185, 942
Eco47I GGWCC 4 cut(s) 174, 468, 668, 910
Eco57I CTGAAG 3 cut(s) 773, 849, 1023
Eco72I CACGTG 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 472
EcoRI GAATTC 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 670
FaeI CATG 4 cut(s) 282, 350, 632, 807
FatI CATG 4 cut(s) 278, 346, 628, 803
FauI CCCGC 1 cut(s) 1042
FbaI TGATCA 1 cut(s) 718
FblI GTMKAC 3 cut(s) 246, 741, 770
Fnu4HI GCNGC 5 cut(s) 54, 100, 139, 438, 855
FokI GGATG 3 cut(s) 703, 1138, 1194
Fsp4HI GCNGC 5 cut(s) 54, 100, 139, 438, 855
FspBI CTAG 1 cut(s) 1172
GluI GCNGC 5 cut(s) 54, 100, 139, 438, 855
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 863
HaeIII GGCC 3 cut(s) 5, 102, 287
HapII CCGG 3 cut(s) 152, 177, 225
HgaI GACGC 1 cut(s) 97
Hin1II CATG 4 cut(s) 282, 350, 632, 807
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 5 cut(s) 610, 876, 1186, 1194, 1204
HpaII CCGG 3 cut(s) 152, 177, 225
HphI GGTGA 2 cut(s) 36, 652
Hpy188I TCNGA 2 cut(s) 468, 968
Hpy188III TCNNGA 6 cut(s) 115, 493, 572, 788, 827, 1211
Hpy99I CGWCG 1 cut(s) 468
HpyAV CCTTC 4 cut(s) 277, 748, 810, 824
HpyCH4III ACNGT 5 cut(s) 41, 393, 545, 887, 1094
HpyCH4IV ACGT 3 cut(s) 73, 463, 636
HpyCH4V TGCA 7 cut(s) 409, 437, 762, 867, 899, 1104, 1252
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 1181
HpyF3I CTNAG 1 cut(s) 1212
HpySE526I ACGT 3 cut(s) 73, 463, 636
Hsp92II CATG 4 cut(s) 282, 350, 632, 807
Ksp22I TGATCA 1 cut(s) 718
KspI CCGCGG 1 cut(s) 100
Kzo9I GATC 8 cut(s) 156, 661, 697, 718, 823, 968, 1017, 1233
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 2 cut(s) 449, 866
LweI GCATC 3 cut(s) 192, 599, 1052
MabI ACCWGGT 1 cut(s) 670
MaeI CTAG 1 cut(s) 1172
MaeII ACGT 3 cut(s) 73, 463, 636
MaeIII GTNAC 5 cut(s) 260, 701, 859, 887, 1159
MalI GATC 8 cut(s) 158, 663, 699, 720, 825, 970, 1019, 1235
MboI GATC 8 cut(s) 156, 661, 697, 718, 823, 968, 1017, 1233
MboII GAAGA 7 cut(s) 44, 47, 85, 103, 208, 317, 320
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 2 cut(s) 1069, 1254
MluCI AATT 6 cut(s) 402, 450, 581, 679, 870, 1032
MlyI GAGTC 3 cut(s) 604, 870, 1198
MmeI TCCRAC 2 cut(s) 446, 1098
MseI TTAA 2 cut(s) 303, 839
MslI CAYNNNNRTG 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 3 cut(s) 152, 177, 225
MspR9I CCNGG 1 cut(s) 672
Mva1269I GAATGC 1 cut(s) 783
MvaI CCWGG 1 cut(s) 672
MvnI CGCG 2 cut(s) 99, 980
MwoI GCNNNNNNNGC 2 cut(s) 105, 1181
NdeII GATC 8 cut(s) 156, 661, 697, 718, 823, 968, 1017, 1233
NlaIII CATG 4 cut(s) 282, 350, 632, 807
NlaIV GGNNCC 1 cut(s) 749
NmuCI GTSAC 2 cut(s) 859, 887
OliI CACNNNNGTG 1 cut(s) 513
PaeR7I CTCGAG 1 cut(s) 472
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PctI GAATGC 1 cut(s) 783
PfeI GAWTC 2 cut(s) 1186, 1194
PinAI ACCGGT 1 cut(s) 176
PkrI GCNGC 5 cut(s) 55, 101, 140, 439, 856
Ple19I CGATCG 1 cut(s) 159
PleI GAGTC 3 cut(s) 604, 870, 1198
PmaCI CACGTG 1 cut(s) 74
PmlI CACGTG 1 cut(s) 74
PpsI GAGTC 3 cut(s) 604, 870, 1198
Ppu21I YACGTR 2 cut(s) 74, 637
Psp6I CCWGG 1 cut(s) 670
PspCI CACGTG 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 686
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 1 cut(s) 749
PspPI GGNCC 4 cut(s) 174, 468, 668, 910
PspXI VCTCGAGB 1 cut(s) 472
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 1 cut(s) 661
PvuI CGATCG 1 cut(s) 159
RgaI GCGATCGC 1 cut(s) 159
RsaI GTAC 3 cut(s) 844, 884, 1013
RsaNI GTAC 3 cut(s) 843, 883, 1012
RseI CAYNNNNRTG 1 cut(s) 513
SacII CCGCGG 1 cut(s) 100
SaqAI TTAA 2 cut(s) 303, 839
SatI GCNGC 5 cut(s) 54, 100, 139, 438, 855
Sau3AI GATC 8 cut(s) 156, 661, 697, 718, 823, 968, 1017, 1233
Sau96I GGNCC 4 cut(s) 174, 468, 668, 910
SchI GAGTC 3 cut(s) 604, 870, 1198
ScrFI CCNGG 1 cut(s) 672
SduI GDGCHC 2 cut(s) 1069, 1254
SexAI ACCWGGT 1 cut(s) 670
SfaAI GCGATCGC 1 cut(s) 159
SfaNI GCATC 3 cut(s) 192, 599, 1052
Sfr274I CTCGAG 1 cut(s) 472
Sfr303I CCGCGG 1 cut(s) 100
SgfI GCGATCGC 1 cut(s) 159
SgrBI CCGCGG 1 cut(s) 100
SinI GGWCC 4 cut(s) 174, 468, 668, 910
SlaI CTCGAG 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 6 cut(s) 402, 450, 581, 679, 870, 1032
SsiI CCGC 6 cut(s) 54, 97, 99, 138, 299, 1049
SspI AATATT 2 cut(s) 931, 1222
SspMI CTAG 1 cut(s) 1172
StyD4I CCNGG 1 cut(s) 670
TaaI ACNGT 5 cut(s) 41, 393, 545, 887, 1094
TaiI ACGT 3 cut(s) 76, 466, 639
TaqI TCGA 3 cut(s) 87, 143, 473
TasI AATT 6 cut(s) 402, 450, 581, 679, 870, 1032
TatI WGTACW 1 cut(s) 1011
TauI GCSGC 3 cut(s) 56, 102, 141
TfiI GAWTC 2 cut(s) 1186, 1194
Tru1I TTAA 2 cut(s) 303, 839
Tru9I TTAA 2 cut(s) 303, 839
TscAI CASTG 4 cut(s) 515, 550, 864, 1235
TseFI GTSAC 2 cut(s) 859, 887
TseI GCWGC 2 cut(s) 437, 854
Tsp45I GTSAC 2 cut(s) 859, 887
TspDTI ATGAA 4 cut(s) 208, 335, 792, 973
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 4 cut(s) 515, 550, 864, 1235
VneI GTGCAC 1 cut(s) 1250
VpaK11BI GGWCC 4 cut(s) 174, 468, 668, 910
XapI RAATTY 3 cut(s) 402, 450, 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XhoI CTCGAG 1 cut(s) 472
XmiI GTMKAC 3 cut(s) 246, 741, 770
XspI CTAG 1 cut(s) 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.