Rroxscaffold_7G00216590

Heparan-alpha-glucosaminide N-acetyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009646
Physical Location & Seq
Forward (+)
67324692 .. 67330237
5546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00216590.1

Sequence Viewer

Length: 1260 bp
ATGGCCGACGATTATGTCCTCATTCCAAACGGAGAAGAAGACCATGCAGTCCTCGCCACCACTCCCAAGCCTCCACGTGTCGCCTCCCTCGACGTCTTCCGCGGCCTCTGCGTCTTCCTGATGATGGTGGTGGATTACGGCGGCTCGATTATTCCGGCGATTGCTCACTCGCCGTGGAACGGTCTCCACTTGGCTGACTTTGTGATGCCCTTCTTTCTCTTCATTGCCGGAGTTTCTCTTGCTCTGGTCTACAAGAGAGTGACTAACAGAGTTGAAGCTACATGGAAGGCCATGTTTCGGTCCCTTAAGCTTTTTCTCTTAGGCGTTCTTCTTCAAGGTGGTTATTTTCATGGAGTGAGTTCCTTGACTTATGGAGTTGACATTGAAAGAATACGGTGGTTTGGCATTTTGCAGAGGATAGCCATTGGATATATTGTTGCGGCCTTATGCGAAATCTGGCTTTCACATCGCACCTCGAGGGAAGTGAGGTTTTTCAGGAGCTATTACTGGCACTGGTGTGTCATCTTTTTGTTATCAGCAATATACGCTGGGTTGCTGTATGGTTTGTATGTTCCAGATTGGGAATTCAAAGCATCAACACCTACCTCTTTGTCTCCTTCTGATGATACACATGTTTACGCGGTGAGATGTTCTCTGAGAGGAGATCTTGGACCTGCTTGTAATTCCGCTGGGATGATTGATCGTTACATTGTGGGTGTTGATCATCTCTATTCAAAACCCGTTTACAGGAACCTGAAGGATTGCAATATGTCTACTGATGGTCGGATTCCAGAGAGTTCGCCTTCATGGTGTCATACTCCTTTTGATCCTGAAGGTATATTAAGCACCCTAACAGCAGCAGTGACTTGCATAATTGGACTTCAATATGGTCACATTCTTGCACACATACAGGACCACAAAGGACGCCTAAATATTTGGTCCTTGTTTTCAGTTTCAATGTTTGTCCTTGGATCATTTCTTGCCTTCATAGGCGTTCCTGTAAATAAATCTCTGTACACTATCAGTTATATGCTAATTACTTCTGCATCTGCAGGAATGACATTTTGCGCTCTATATCTGCTGAGAGATGTTTACGGTTACCGGCGCATAACGTTTGTGTTGGAGTGGATGGGCATACATTCTTTGAGTATTTTCATAATTGTAACTTCCAACCTAGCTGTTATTGCGATTCAGGGATTCTACTGGATTGATCCTGAGAATAATATTGTTCACTGGATCATATCTTTTGTGCACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko04142 map00531 map01100 map04142
Pfam Domains
Protein Families
DUF1624

Protein Analysis

419

Amino Acids

47.22

Weight (kDa)

7.64

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HGSNAT_cat PF07786 26 - 150 1.7e-06 Heparan-alpha-glucosaminide N-acetyltransferase, catalytic
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 14, 47
AatII GACGTC 1 cut(s) 96
AbsI CCTCGAGG 1 cut(s) 475
Acc36I ACCTGC 1 cut(s) 682
AccI GTMKAC 2 cut(s) 249, 773
AccII CGCG 2 cut(s) 102, 641
AciI CCGC 6 cut(s) 100, 102, 141, 440, 641, 687
AclI AACGTT 1 cut(s) 1112
AclWI GGATC 4 cut(s) 821, 979, 1205, 1244
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 584
AcuI CTGAAG 2 cut(s) 776, 852
AcvI CACGTG 1 cut(s) 77
AcyI GRCGYC 2 cut(s) 93, 925
AfaI GTAC 1 cut(s) 1016
AfiI CCNNNNNNNGG 4 cut(s) 124, 179, 297, 747
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 2 cut(s) 76, 631
AgsI TTSAA 7 cut(s) 275, 335, 386, 589, 735, 884, 957
AleI CACNNNNGTG 1 cut(s) 516
AluBI AGCT 4 cut(s) 278, 310, 501, 1178
AluI AGCT 4 cut(s) 278, 310, 501, 1178
Alw21I GWGCWC 1 cut(s) 1254
Alw26I GTCTC 2 cut(s) 188, 618
Alw44I GTGCAC 1 cut(s) 1250
AlwI GGATC 4 cut(s) 821, 979, 1205, 1244
Ama87I CYCGRG 1 cut(s) 475
AoxI GGCC 4 cut(s) 3, 103, 288, 441
ApaLI GTGCAC 1 cut(s) 1250
ApeKI GCWGC 1 cut(s) 857
ApoI RAATTY 1 cut(s) 584
AspLEI GCGC 2 cut(s) 1070, 1107
AspS9I GGNCC 4 cut(s) 300, 671, 913, 939
AsuHPI GGTGA 1 cut(s) 655
AvaI CYCGRG 1 cut(s) 475
AvaII GGWCC 4 cut(s) 300, 671, 913, 939
BaeGI GKGCMC 1 cut(s) 1254
BaeI ACNNNNGTAYC 2 cut(s) 618, 651
BbrPI CACGTG 1 cut(s) 77
BbsI GAAGAC 3 cut(s) 45, 88, 106
Bbv12I GWGCWC 1 cut(s) 1254
BbvI GCAGC 1 cut(s) 869
BccI CCATC 3 cut(s) 118, 773, 1123
BceAI ACGGC 2 cut(s) 154, 157
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 188, 618
BfaI CTAG 1 cut(s) 1175
BfmI CTRYAG 1 cut(s) 1050
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 682
BglII AGATCT 1 cut(s) 664
BisI GCNGC 4 cut(s) 103, 142, 441, 858
BlsI GCNGC 4 cut(s) 104, 143, 442, 859
Bme18I GGWCC 4 cut(s) 300, 671, 913, 939
BmeT110I CYCGRG 1 cut(s) 475
BmgT120I GGNCC 4 cut(s) 300, 671, 913, 939
BmiI GGNNCC 2 cut(s) 302, 752
BmsI GCATC 3 cut(s) 195, 602, 1055
BpiI GAAGAC 3 cut(s) 45, 88, 106
BplI GAGNNNNNCTC 2 cut(s) 637, 669
BsaAI YACGTR 1 cut(s) 77
BsaHI GRCGYC 2 cut(s) 93, 925
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 3 cut(s) 100, 173, 967
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 179, 297, 747
Bse118I RCCGGY 1 cut(s) 1101
Bse1I ACTGG 4 cut(s) 512, 518, 1208, 1238
Bse3DI GCAATG 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 100, 173, 967
BseGI GGATG 2 cut(s) 699, 1134
BseLI CCNNNNNNNGG 4 cut(s) 124, 179, 297, 747
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 3 cut(s) 647, 1073, 1206
BseNI ACTGG 4 cut(s) 512, 518, 1208, 1238
BseRI GAGGAG 1 cut(s) 675
BseSI GKGCMC 1 cut(s) 1254
BseXI GCAGC 1 cut(s) 869
BseYI CCCAGC 2 cut(s) 548, 689
Bsh1236I CGCG 2 cut(s) 102, 641
BshFI GGCC 4 cut(s) 5, 105, 290, 443
BsiHKAI GWGCWC 1 cut(s) 1254
BsiHKCI CYCGRG 1 cut(s) 475
BsiSI CCGG 3 cut(s) 155, 228, 1102
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 4 cut(s) 124, 179, 297, 747
BsmAI GTCTC 2 cut(s) 188, 618
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 4 cut(s) 5, 105, 290, 443
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 1254
Bsp1407I TGTACA 1 cut(s) 1014
Bsp143I GATC 7 cut(s) 664, 700, 721, 826, 971, 1210, 1236
BspACI CCGC 6 cut(s) 100, 102, 141, 440, 641, 687
BspANI GGCC 4 cut(s) 5, 105, 290, 443
BspCNI CTCAG 3 cut(s) 648, 1074, 1207
BspFNI CGCG 2 cut(s) 102, 641
BspLI GGNNCC 2 cut(s) 302, 752
BspMAI CTGCAG 1 cut(s) 1054
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 4 cut(s) 821, 979, 1205, 1244
BspTI CTTAAG 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 1101
BsrGI TGTACA 1 cut(s) 1014
BsrI ACTGG 4 cut(s) 512, 518, 1208, 1238
BssAI RCCGGY 1 cut(s) 1101
BssECI CCNNGG 3 cut(s) 100, 173, 967
BssMI GATC 7 cut(s) 664, 700, 721, 826, 971, 1210, 1236
BssNI GRCGYC 2 cut(s) 93, 925
BssT1I CCWWGG 1 cut(s) 967
Bst4CI ACNGT 3 cut(s) 182, 396, 1097
Bst6I CTCTTC 1 cut(s) 224
BstACI GRCGYC 2 cut(s) 93, 925
BstAFI CTTAAG 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 1014
BstBAI YACGTR 1 cut(s) 77
BstDEI CTNAG 4 cut(s) 319, 656, 1082, 1215
BstDSI CCRYGG 2 cut(s) 100, 173
BstEII GGTNACC 1 cut(s) 1097
BstF5I GGATG 2 cut(s) 699, 1134
BstFNI CGCG 2 cut(s) 102, 641
BstHHI GCGC 2 cut(s) 1070, 1107
BstKTI GATC 7 cut(s) 667, 703, 724, 829, 974, 1213, 1239
BstMAI GTCTC 2 cut(s) 188, 618
BstMBI GATC 7 cut(s) 664, 700, 721, 826, 971, 1210, 1236
BstMWI GCNNNNNNNGC 4 cut(s) 53, 108, 545, 1184
BstNSI RCATGY 1 cut(s) 635
BstPI GGTNACC 1 cut(s) 1097
BstSFI CTRYAG 1 cut(s) 1050
BstSLI GKGCMC 1 cut(s) 1254
BstUI CGCG 2 cut(s) 102, 641
BstV1I GCAGC 1 cut(s) 869
BstV2I GAAGAC 3 cut(s) 45, 88, 106
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 4 cut(s) 5, 105, 290, 443
BtgI CCRYGG 2 cut(s) 100, 173
BtgZI GCGATG 1 cut(s) 452
BtsCI GGATG 2 cut(s) 699, 1134
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 3 cut(s) 511, 867, 1231
BveI ACCTGC 1 cut(s) 682
CfoI GCGC 2 cut(s) 1070, 1107
Cfr10I RCCGGY 1 cut(s) 1101
Cfr13I GGNCC 4 cut(s) 300, 671, 913, 939
Cfr42I CCGCGG 1 cut(s) 103
CseI GACGC 2 cut(s) 100, 933
Csp6I GTAC 1 cut(s) 1015
CviAII CATG 6 cut(s) 44, 282, 292, 350, 632, 807
CviQI GTAC 1 cut(s) 1015
DdeI CTNAG 4 cut(s) 319, 656, 1082, 1215
DpnI GATC 7 cut(s) 666, 702, 723, 828, 973, 1212, 1238
DpnII GATC 7 cut(s) 664, 700, 721, 826, 971, 1210, 1236
DrdI GACNNNNNNGTC 2 cut(s) 14, 47
DseDI GACNNNNNNGTC 2 cut(s) 14, 47
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 967
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 4 cut(s) 300, 671, 913, 939
Eco57I CTGAAG 2 cut(s) 776, 852
Eco72I CACGTG 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 475
Eco91I GGTNACC 1 cut(s) 1097
EcoO65I GGTNACC 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 967
ErhI CCWWGG 1 cut(s) 967
FaeI CATG 6 cut(s) 47, 285, 295, 353, 635, 810
FaqI GGGAC 1 cut(s) 286
FatI CATG 6 cut(s) 43, 281, 291, 349, 631, 806
FbaI TGATCA 1 cut(s) 721
FblI GTMKAC 2 cut(s) 249, 773
Fnu4HI GCNGC 4 cut(s) 103, 142, 441, 858
FokI GGATG 2 cut(s) 706, 1141
Fsp4HI GCNGC 4 cut(s) 103, 142, 441, 858
FspBI CTAG 1 cut(s) 1175
GlaI GCGC 2 cut(s) 1069, 1106
GluI GCNGC 4 cut(s) 103, 142, 441, 858
GsaI CCCAGC 2 cut(s) 552, 693
HaeIII GGCC 4 cut(s) 5, 105, 290, 443
HapII CCGG 3 cut(s) 155, 228, 1102
HgaI GACGC 2 cut(s) 100, 933
HhaI GCGC 2 cut(s) 1070, 1107
Hin1I GRCGYC 2 cut(s) 93, 925
Hin1II CATG 6 cut(s) 47, 285, 295, 353, 635, 810
Hin6I GCGC 2 cut(s) 1068, 1105
HinP1I GCGC 2 cut(s) 1068, 1105
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 3 cut(s) 787, 1189, 1197
HpaII CCGG 3 cut(s) 155, 228, 1102
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 9 cut(s) 250, 379, 637, 745, 774, 1017, 1093, 1231, 1252
Hpy188I TCNGA 3 cut(s) 622, 657, 786
Hpy188III TCNNGA 6 cut(s) 118, 496, 575, 791, 830, 1214
Hpy8I GTNNAC 9 cut(s) 250, 379, 637, 745, 774, 1017, 1093, 1231, 1252
Hpy99I CGWCG 2 cut(s) 11, 95
HpyAV CCTTC 7 cut(s) 220, 280, 627, 751, 813, 827, 994
HpyCH4III ACNGT 3 cut(s) 182, 396, 1097
HpyCH4IV ACGT 3 cut(s) 76, 93, 1112
HpyCH4V TGCA 8 cut(s) 47, 412, 765, 870, 902, 1046, 1052, 1252
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 108, 545, 1184
HpyF3I CTNAG 4 cut(s) 319, 656, 1082, 1215
HpySE526I ACGT 3 cut(s) 76, 93, 1112
Hsp92I GRCGYC 2 cut(s) 93, 925
Hsp92II CATG 6 cut(s) 47, 285, 295, 353, 635, 810
HspAI GCGC 2 cut(s) 1068, 1105
Ksp22I TGATCA 1 cut(s) 721
KspI CCGCGG 1 cut(s) 103
Kzo9I GATC 7 cut(s) 664, 700, 721, 826, 971, 1210, 1236
LmnI GCTCC 1 cut(s) 498
Lsp1109I GCAGC 1 cut(s) 869
LweI GCATC 3 cut(s) 195, 602, 1055
MaeI CTAG 1 cut(s) 1175
MaeII ACGT 3 cut(s) 76, 93, 1112
MaeIII GTNAC 6 cut(s) 259, 704, 862, 890, 1097, 1162
MalI GATC 7 cut(s) 666, 702, 723, 828, 973, 1212, 1238
MboI GATC 7 cut(s) 664, 700, 721, 826, 971, 1210, 1236
MboII GAAGA 7 cut(s) 47, 50, 88, 106, 211, 320, 323
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 1 cut(s) 1254
MluCI AATT 5 cut(s) 584, 682, 873, 1035, 1158
MmeI TCCRAC 3 cut(s) 764, 1101, 1194
MseI TTAA 2 cut(s) 306, 842
MslI CAYNNNNRTG 1 cut(s) 516
MspA1I CMGCKG 2 cut(s) 102, 689
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 3 cut(s) 155, 228, 1102
MvnI CGCG 2 cut(s) 102, 641
MwoI GCNNNNNNNGC 4 cut(s) 53, 108, 545, 1184
NdeII GATC 7 cut(s) 664, 700, 721, 826, 971, 1210, 1236
NlaIII CATG 6 cut(s) 47, 285, 295, 353, 635, 810
NlaIV GGNNCC 2 cut(s) 302, 752
NmuCI GTSAC 3 cut(s) 259, 862, 890
NspI RCATGY 1 cut(s) 635
OliI CACNNNNGTG 1 cut(s) 516
PaeR7I CTCGAG 1 cut(s) 475
PciI ACATGT 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 3 cut(s) 787, 1189, 1197
PkrI GCNGC 4 cut(s) 104, 143, 442, 859
PmaCI CACGTG 1 cut(s) 77
PmlI CACGTG 1 cut(s) 77
Ppu21I YACGTR 1 cut(s) 77
PscI ACATGT 1 cut(s) 631
Psp1406I AACGTT 1 cut(s) 1112
PspCI CACGTG 1 cut(s) 77
PspEI GGTNACC 1 cut(s) 1097
PspFI CCCAGC 2 cut(s) 548, 689
PspN4I GGNNCC 2 cut(s) 302, 752
PspPI GGNCC 4 cut(s) 300, 671, 913, 939
PspXI VCTCGAGB 1 cut(s) 475
PstI CTGCAG 1 cut(s) 1054
PsuI RGATCY 1 cut(s) 664
RsaI GTAC 1 cut(s) 1016
RsaNI GTAC 1 cut(s) 1015
RseI CAYNNNNRTG 1 cut(s) 516
SacII CCGCGG 1 cut(s) 103
SaqAI TTAA 2 cut(s) 306, 842
SatI GCNGC 4 cut(s) 103, 142, 441, 858
Sau3AI GATC 7 cut(s) 664, 700, 721, 826, 971, 1210, 1236
Sau96I GGNCC 4 cut(s) 300, 671, 913, 939
SduI GDGCHC 1 cut(s) 1254
SfaNI GCATC 3 cut(s) 195, 602, 1055
SfcI CTRYAG 1 cut(s) 1050
Sfr274I CTCGAG 1 cut(s) 475
Sfr303I CCGCGG 1 cut(s) 103
SgrBI CCGCGG 1 cut(s) 103
SinI GGWCC 4 cut(s) 300, 671, 913, 939
SlaI CTCGAG 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 2 cut(s) 305, 475
SmoI CTYRAG 2 cut(s) 305, 475
Sse9I AATT 5 cut(s) 584, 682, 873, 1035, 1158
SsiI CCGC 6 cut(s) 100, 102, 141, 440, 641, 687
SspI AATATT 2 cut(s) 934, 1225
SspMI CTAG 1 cut(s) 1175
StyI CCWWGG 1 cut(s) 967
TaaI ACNGT 3 cut(s) 182, 396, 1097
TaiI ACGT 3 cut(s) 79, 96, 1115
TaqI TCGA 3 cut(s) 90, 146, 476
TaqII GACCGA 1 cut(s) 288
TasI AATT 5 cut(s) 584, 682, 873, 1035, 1158
TatI WGTACW 1 cut(s) 1014
TauI GCSGC 3 cut(s) 105, 144, 443
TfiI GAWTC 3 cut(s) 787, 1189, 1197
Tru1I TTAA 2 cut(s) 306, 842
Tru9I TTAA 2 cut(s) 306, 842
TscAI CASTG 3 cut(s) 518, 867, 1238
TseFI GTSAC 3 cut(s) 259, 862, 890
TseI GCWGC 1 cut(s) 857
Tsp45I GTSAC 3 cut(s) 259, 862, 890
TspDTI ATGAA 5 cut(s) 211, 338, 795, 976, 1144
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 3 cut(s) 518, 867, 1238
Vha464I CTTAAG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 1250
VpaK11BI GGWCC 4 cut(s) 300, 671, 913, 939
XapI RAATTY 1 cut(s) 584
XceI RCATGY 1 cut(s) 635
XhoI CTCGAG 1 cut(s) 475
XmiI GTMKAC 2 cut(s) 249, 773
XspI CTAG 1 cut(s) 1175
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.