Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007072

Physical Location & Seq

Genomic Coordinates Reverse (-)

2410589 .. 2415744

Gene Structure 5156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03090.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGGGTGAATGGAGAGACTGAGATTGAAGGTGAGAACAGGAACACCAAGGAAATTGAAGAAATCGGAGAAATGGGTTCGATTGTTGGAGCTGAGTTTGCTCAGCCTCCTGTAAAGCTTGTAGTTGGGTACGCTTTGACATCAAAGAAGAAGAAGAGCTTCTTGCAGCCTAAGCTTATTGGATTGGCTCGGAATAAGGGTATATCCTTCATTGCAATTGATCCAAATCAGACACTTTCAGATCAAGGTCCGTTTGATGTTGTTCTGCATAAGTTGCCGGGAAGAGAATGGTGCGAGGTTATAGAGGATTACAGGCAAAAACATCCAGAAGTTACTGTTCTTGATCCGCCAAATGCAGTACAACATCTGCACAATCGCCAGTCCATGCTTCAAGATGTGGCAGATCTAAACTTGTCTGACTCCCATGGAATGGTTTGTGTTCCAAAACAATTGACCATCACAAAAGATACATTATCTATTCCAAATGAAGTAGCTAAAGCTGGGCTAAAATTGCCTCTAGTTGTTAAACCACTATTGGTGGATGGTAGCGCCAAGTCACATGAACTGTCTCTTGCTTATGACCAATGCTCCCTCTCAGAACTTGAACCTCCTCTGGTCCTGCAGGAGTTTGTAAATCATGGTGGTGTCCTGTTTAAAATATATATTGTCGGGGAAGCCATAAAGGTTGTAAGGCGTTTCTCTCTCCCTAATATCAGTAAACGTGATCTAGAAAAACTTGCTGGTGTTTTCCGTTTCCCAAGGGTTTCATGTGCGGCAGCTTCAGCAGATGATGCAGACCTGGACCCTAGTATTGCTGAACTACCTGAACGACCTTTACTAGAGAGGCTTGCAAGGGAGCTTCGTCAACGATTGGGACTCCGGCTATTCAATGTAGATATGATCCGAGAGTACGGGACAAAGGATGTCTATTATGTCATCGACATCAACTACTTTCCTGGCAAGGTACGGGAAAATGCCGGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

329

Amino Acids

36.55

Weight (kDa)

6.04

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	41 - 120	5.7e-35	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	140 - 336	2.3e-91	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33770
fragaria_vesca	FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090
malus_domestica	MD00G1031200.v1.1
prunus_persica	Prupe.8G151200_v2.0.a1 Prupe.8G151200_v2.0.a1
pyrus_communis	pycom10g09690
rosa_chinensis	RchiOBHm_Chr6g0247961
rosa_laevigata	RLG00000015167
rosa_multiflora	Rmu_ssc0000139.1_g000003
rosa_roxburghii	Rroxscaffold_179G00449320 Rroxscaffold_7G00213550
rosa_rugosa	Rorug05G0529800 Rorug05G0529800
rosa_samantha	Rh6AG044600 Rh6BG039600 Rh6CG038200 Rh6DG035200
rosa_wichuraiana	Rw6G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	430
AciI	CCGC	2 cut(s)	347, 773
AclWI	GGATC	3 cut(s)	215, 338, 895
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	4 cut(s)	131, 360, 911, 966
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	5 cut(s)	29, 59, 392, 605, 889
AjnI	CCWGG	2 cut(s)	798, 955
AluBI	AGCT	8 cut(s)	92, 118, 159, 175, 494, 500, 779, 859
AluI	AGCT	8 cut(s)	92, 118, 159, 175, 494, 500, 779, 859
Alw26I	GTCTC	2 cut(s)	11, 573
AlwI	GGATC	3 cut(s)	215, 338, 895
ApeKI	GCWGC	2 cut(s)	166, 776
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	551
AspS9I	GGNCC	3 cut(s)	248, 616, 802
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	19, 44
AvaII	GGWCC	3 cut(s)	248, 616, 802
BbvI	GCAGC	2 cut(s)	178, 788
BccI	CCATC	2 cut(s)	464, 536
BciT130I	CCWGG	2 cut(s)	800, 957
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	11, 573
BfaI	CTAG	4 cut(s)	518, 728, 807, 839
BfmI	CTRYAG	1 cut(s)	620
BfoI	RGCGCY	1 cut(s)	552
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	3 cut(s)	167, 774, 777
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	3 cut(s)	168, 775, 778
Bme1390I	CCNGG	3 cut(s)	279, 800, 957
Bme18I	GGWCC	3 cut(s)	248, 616, 802
BmgT120I	GGNCC	3 cut(s)	248, 616, 802
BmiI	GGNNCC	1 cut(s)	804
BmrFI	CCNGG	3 cut(s)	279, 800, 957
BmsI	GCATC	1 cut(s)	781
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	48, 424, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	800, 957
BseDI	CCNNGG	3 cut(s)	48, 424, 758
BseGI	GGATG	3 cut(s)	322, 547, 928
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	4 cut(s)	12, 84, 116, 609
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	600
BseXI	GCAGC	2 cut(s)	178, 788
BseYI	CCCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	278, 880, 978
BslFI	GGGAC	2 cut(s)	888, 928
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	2 cut(s)	11, 573
BsmFI	GGGAC	2 cut(s)	888, 928
Bsp143I	GATC	6 cut(s)	220, 241, 343, 403, 724, 900
Bsp1720I	GCTNAGC	1 cut(s)	102
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	2 cut(s)	347, 773
BspCNI	CTCAG	4 cut(s)	13, 85, 115, 608
BspLI	GGNNCC	1 cut(s)	804
BspMAI	CTGCAG	1 cut(s)	624
BspPI	GGATC	3 cut(s)	215, 338, 895
BspQI	GCTCTTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	3 cut(s)	48, 424, 758
BssMI	GATC	6 cut(s)	220, 241, 343, 403, 724, 900
BssT1I	CCWWGG	3 cut(s)	48, 424, 758
Bst2UI	CCWGG	2 cut(s)	800, 957
Bst4CI	ACNGT	2 cut(s)	337, 567
Bst6I	CTCTTC	2 cut(s)	149, 277
BstAPI	GCANNNNNTGC	2 cut(s)	274, 791
BstC8I	GCNNGC	1 cut(s)	849
BstDEI	CTNAG	5 cut(s)	21, 93, 102, 171, 595
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	3 cut(s)	322, 547, 928
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	6 cut(s)	223, 244, 346, 406, 727, 903
BstMAI	GTCTC	2 cut(s)	11, 573
BstMBI	GATC	6 cut(s)	220, 241, 343, 403, 724, 900
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 172, 274, 511, 782, 791
BstNI	CCWGG	2 cut(s)	800, 957
BstSCI	CCNGG	3 cut(s)	277, 798, 955
BstSFI	CTRYAG	1 cut(s)	620
BstV1I	GCAGC	2 cut(s)	178, 788
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	322, 547, 928
Cac8I	GCNNGC	1 cut(s)	849
CfoI	GCGC	1 cut(s)	551
Cfr13I	GGNCC	3 cut(s)	248, 616, 802
Csp6I	GTAC	4 cut(s)	130, 359, 910, 965
CviAII	CATG	5 cut(s)	385, 425, 560, 638, 768
CviQI	GTAC	4 cut(s)	130, 359, 910, 965
DdeI	CTNAG	5 cut(s)	21, 93, 102, 171, 595
DpnI	GATC	6 cut(s)	222, 243, 345, 405, 726, 902
DpnII	GATC	6 cut(s)	220, 241, 343, 403, 724, 900
DraI	TTTAAA	1 cut(s)	655
Eam1104I	CTCTTC	2 cut(s)	149, 277
EarI	CTCTTC	2 cut(s)	149, 277
EciI	GGCGGA	1 cut(s)	336
Eco130I	CCWWGG	3 cut(s)	48, 424, 758
Eco47I	GGWCC	3 cut(s)	248, 616, 802
Eco57I	CTGAAG	1 cut(s)	765
EcoRII	CCWGG	2 cut(s)	798, 955
EcoT14I	CCWWGG	3 cut(s)	48, 424, 758
ErhI	CCWWGG	3 cut(s)	48, 424, 758
FaeI	CATG	5 cut(s)	388, 428, 563, 641, 771
FalI	AAGNNNNNCTT	4 cut(s)	143, 175, 146, 178
FaqI	GGGAC	2 cut(s)	888, 928
FatI	CATG	5 cut(s)	384, 424, 559, 637, 767
Fnu4HI	GCNGC	3 cut(s)	167, 774, 777
FokI	GGATG	3 cut(s)	309, 554, 935
Fsp4HI	GCNGC	3 cut(s)	167, 774, 777
FspBI	CTAG	4 cut(s)	518, 728, 807, 839
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	3 cut(s)	167, 774, 777
GsaI	CCCAGC	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	552
HapII	CCGG	3 cut(s)	278, 880, 978
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	5 cut(s)	388, 428, 563, 641, 771
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HincII	GTYRAC	1 cut(s)	866
HindII	GTYRAC	1 cut(s)	866
HindIII	AAGCTT	2 cut(s)	116, 173
HinfI	GANTC	2 cut(s)	419, 876
HpaII	CCGG	3 cut(s)	278, 880, 978
HphI	GGTGA	2 cut(s)	19, 44
Hpy166II	GTNNAC	2 cut(s)	719, 866
Hpy188I	TCNGA	7 cut(s)	68, 192, 231, 241, 418, 598, 905
Hpy188III	TCNNGA	4 cut(s)	326, 341, 392, 728
Hpy8I	GTNNAC	2 cut(s)	719, 866
HpyAV	CCTTC	2 cut(s)	23, 217
HpyCH4III	ACNGT	2 cut(s)	337, 567
HpyCH4IV	ACGT	1 cut(s)	721
HpyCH4V	TGCA	8 cut(s)	166, 215, 268, 356, 370, 622, 794, 851
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 172, 274, 511, 782, 791
HpyF3I	CTNAG	5 cut(s)	21, 93, 102, 171, 595
HpySE526I	ACGT	1 cut(s)	721
Hsp92II	CATG	5 cut(s)	388, 428, 563, 641, 771
HspAI	GCGC	1 cut(s)	549
Kzo9I	GATC	6 cut(s)	220, 241, 343, 403, 724, 900
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	3 cut(s)	89, 593, 856
Lsp1109I	GCAGC	2 cut(s)	178, 788
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	4 cut(s)	518, 728, 807, 839
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	2 cut(s)	331, 555
MalI	GATC	6 cut(s)	222, 243, 345, 405, 726, 902
MboI	GATC	6 cut(s)	220, 241, 343, 403, 724, 900
MboII	GAAGA	5 cut(s)	71, 160, 163, 166, 294
MfeI	CAATTG	2 cut(s)	216, 449
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	4 cut(s)	54, 216, 449, 509
MlyI	GAGTC	2 cut(s)	413, 870
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	8 cut(s)	117, 289, 298, 525, 602, 618, 621, 837
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	525, 654
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	3 cut(s)	278, 880, 978
MspR9I	CCNGG	3 cut(s)	279, 800, 957
MunI	CAATTG	2 cut(s)	216, 449
MvaI	CCWGG	2 cut(s)	800, 957
MwoI	GCNNNNNNNGC	6 cut(s)	98, 172, 274, 511, 782, 791
NciI	CCSGG	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	424
NdeII	GATC	6 cut(s)	220, 241, 343, 403, 724, 900
NlaIII	CATG	5 cut(s)	388, 428, 563, 641, 771
NlaIV	GGNNCC	1 cut(s)	804
NmuCI	GTSAC	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	3 cut(s)	168, 775, 778
PleI	GAGTC	2 cut(s)	413, 870
PpsI	GAGTC	2 cut(s)	413, 870
Psp6I	CCWGG	2 cut(s)	798, 955
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	2 cut(s)	798, 955
PspN4I	GGNNCC	1 cut(s)	804
PspPI	GGNCC	3 cut(s)	248, 616, 802
PsrI	GAACNNNNNNTAC	2 cut(s)	819, 851
PstI	CTGCAG	1 cut(s)	624
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	4 cut(s)	131, 360, 911, 966
RsaNI	GTAC	4 cut(s)	130, 359, 910, 965
RseI	CAYNNNNRTG	1 cut(s)	642
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	525, 654
SatI	GCNGC	3 cut(s)	167, 774, 777
Sau3AI	GATC	6 cut(s)	220, 241, 343, 403, 724, 900
Sau96I	GGNCC	3 cut(s)	248, 616, 802
SbfI	CCTGCAGG	1 cut(s)	624
SchI	GAGTC	2 cut(s)	413, 870
ScrFI	CCNGG	3 cut(s)	279, 800, 957
SdaI	CCTGCAGG	1 cut(s)	624
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	620
SinI	GGWCC	3 cut(s)	248, 616, 802
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse8387I	CCTGCAGG	1 cut(s)	624
Sse9I	AATT	4 cut(s)	54, 216, 449, 509
SsiI	CCGC	2 cut(s)	347, 773
SspMI	CTAG	4 cut(s)	518, 728, 807, 839
StyD4I	CCNGG	3 cut(s)	277, 798, 955
StyI	CCWWGG	3 cut(s)	48, 424, 758
TaaI	ACNGT	2 cut(s)	337, 567
TaiI	ACGT	1 cut(s)	724
TaqI	TCGA	2 cut(s)	80, 939
TasI	AATT	4 cut(s)	54, 216, 449, 509
TatI	WGTACW	1 cut(s)	358
TauI	GCSGC	1 cut(s)	776
Tru1I	TTAA	2 cut(s)	525, 654
Tru9I	TTAA	2 cut(s)	525, 654
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	2 cut(s)	166, 776
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	4 cut(s)	199, 501, 576, 756
TspGWI	ACGGA	2 cut(s)	240, 740
Van91I	CCANNNNNTGG	1 cut(s)	430
VpaK11BI	GGWCC	3 cut(s)	248, 616, 802
XbaI	TCTAGA	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	4 cut(s)	518, 728, 807, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.