Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007072

Physical Location & Seq

Genomic Coordinates Forward (+)

62549711 .. 62555075

Gene Structure 5365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGGGTGAACGGAGATGAAGGTGAGGACAAGCGCACCAAGGAAATTGAAGAATCGGGTTCGGTTGTTCCAACCAAGCTCGTAGTTGGGTACGCCTTAACTTCAAAGAAGAAGAAGAGCTTCATGCAGCCTAAACTTGTTGGATTGGCTCGGAATAAGGGTATATCCTTCATTGCAATTGATCCAAATCGGACACTTTCAGATCAAGGTCCATTTGATGTTGTTTTGCATAAGTTGCCAGGAAGAGAATGGTGCGAGGTTATAGAGGAATACAGGCAAAAACATCCAGAAGTAACTGTCCTCGATCCGCCAAATGCAGTACAACATCTTCACAATCGCCAGTCCATGCTTCAAGATGTGGCAGATCTAAACTTGTCCGACTCTCATGGAACGGTTTGTGTTCCAAAACAATTGACTATCACAAAAGATCCATCATCTATTCCTAATGAAGTAGCTAAAGCTGGGTTAAAATTGCCTCTAGTTGTTAAACCACTATTGGTGGATGGTAGCGCCAAGTCACATGAACTGTTTCTTGCTTATGACCAATGGTCCCTCTCAGAACTTGAACCTCCCCTGGTCCTGCAGGAGTTTGTAAATCATGGTGGTGTCCTCTTTAAAATATATATTGTCGGGGAAGCCATAAAGGTTGTAAGGCGTTTCTCTCTCCCTAATATCAGTAAACGTGAACTAGAAAAACTTGCTGGTGTTTTCCGTTTCCCAAGGGTTTCATGTGCGGCAGCTTCAGCAGATGATGCAGACCTGGACCCTAGTATTGCTGAACTACCTCAACGACCTTTGCTAGAGAGGCTTGCAAGGGAGCTCCGTCAACGATTGGGACTCCAACTATTCAATGTAGATATGATCCGAGAGTACGGGACAAAGGATGTCTTTTATGTCATTGACATCAACTACTTTCCTGGCAAGTATAATTTGTTTGTTCTCTATACGATCGCTGTCGATTTACGTACATCCTTTGAAATTGAAATTAACTATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

333

Amino Acids

37.43

Weight (kDa)

6.68

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	28 - 107	1.1e-35	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	127 - 310	6.2e-82	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33770
fragaria_vesca	FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090
malus_domestica	MD00G1031200.v1.1
prunus_persica	Prupe.8G151200_v2.0.a1 Prupe.8G151200_v2.0.a1
pyrus_communis	pycom10g09690
rosa_chinensis	RchiOBHm_Chr6g0247961
rosa_laevigata	RLG00000015167
rosa_multiflora	Rmu_ssc0000139.1_g000003
rosa_roxburghii	Rroxscaffold_179G00449320 Rroxscaffold_7G00213550
rosa_rugosa	Rorug05G0529800 Rorug05G0529800
rosa_samantha	Rh6AG044600 Rh6BG039600 Rh6CG038200 Rh6DG035200
rosa_wichuraiana	Rw6G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	308, 734
AclWI	GGATC	4 cut(s)	176, 299, 422, 856
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	4 cut(s)	92, 321, 872, 967
AgsI	TTSAA	7 cut(s)	50, 105, 353, 566, 850, 977, 983
AhdI	GACNNNNNGTC	1 cut(s)	547
AjnI	CCWGG	4 cut(s)	238, 573, 759, 916
AluBI	AGCT	6 cut(s)	79, 120, 455, 461, 740, 820
AluI	AGCT	6 cut(s)	79, 120, 455, 461, 740, 820
Alw21I	GWGCWC	1 cut(s)	822
AlwI	GGATC	4 cut(s)	176, 299, 422, 856
ApeKI	GCWGC	2 cut(s)	127, 737
Asp700I	GAANNNNTTC	2 cut(s)	119, 528
AspLEI	GCGC	2 cut(s)	36, 512
AspS9I	GGNCC	4 cut(s)	209, 549, 577, 763
AsuHPI	GGTGA	2 cut(s)	19, 35
AvaII	GGWCC	4 cut(s)	209, 549, 577, 763
BanII	GRGCYC	1 cut(s)	822
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
Bbv12I	GWGCWC	1 cut(s)	822
BbvI	GCAGC	2 cut(s)	139, 749
BccI	CCATC	2 cut(s)	439, 497
BciT130I	CCWGG	4 cut(s)	240, 575, 761, 918
BfaI	CTAG	4 cut(s)	479, 689, 768, 800
BfmI	CTRYAG	1 cut(s)	581
BfoI	RGCGCY	1 cut(s)	513
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	3 cut(s)	128, 735, 738
BlsI	GCNGC	3 cut(s)	129, 736, 739
Bme1390I	CCNGG	4 cut(s)	240, 575, 761, 918
Bme18I	GGWCC	4 cut(s)	209, 549, 577, 763
BmeRI	GACNNNNNGTC	1 cut(s)	547
BmgT120I	GGNCC	4 cut(s)	209, 549, 577, 763
BmiI	GGNNCC	2 cut(s)	551, 765
BmrFI	CCNGG	4 cut(s)	240, 575, 761, 918
BmsI	GCATC	1 cut(s)	742
BsaAI	YACGTR	1 cut(s)	965
BsaBI	GATNNNNATC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	39, 573, 719
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	4 cut(s)	240, 575, 761, 918
BseDI	CCNNGG	3 cut(s)	39, 573, 719
BseGI	GGATG	4 cut(s)	283, 508, 889, 968
BseJI	GATNNNNATC	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	139, 749
BseYI	CCCAGC	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	951
BsiEI	CGRYCG	1 cut(s)	951
BsiHKAI	GWGCWC	1 cut(s)	822
BslFI	GGGAC	3 cut(s)	535, 849, 889
BsmFI	GGGAC	3 cut(s)	535, 849, 889
Bsp1286I	GDGCHC	1 cut(s)	822
Bsp143I	GATC	7 cut(s)	181, 202, 304, 364, 427, 861, 948
BspACI	CCGC	2 cut(s)	308, 734
BspCNI	CTCAG	1 cut(s)	569
BspLI	GGNNCC	2 cut(s)	551, 765
BspMAI	CTGCAG	1 cut(s)	585
BspPI	GGATC	4 cut(s)	176, 299, 422, 856
BspQI	GCTCTTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	3 cut(s)	39, 573, 719
BssMI	GATC	7 cut(s)	181, 202, 304, 364, 427, 861, 948
BssT1I	CCWWGG	2 cut(s)	39, 719
Bst2UI	CCWGG	4 cut(s)	240, 575, 761, 918
Bst4CI	ACNGT	3 cut(s)	298, 394, 528
Bst6I	CTCTTC	2 cut(s)	110, 238
BstAPI	GCANNNNNTGC	2 cut(s)	235, 752
BstBAI	YACGTR	1 cut(s)	965
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	1 cut(s)	556
BstF5I	GGATG	4 cut(s)	283, 508, 889, 968
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	2 cut(s)	36, 512
BstKTI	GATC	7 cut(s)	184, 205, 307, 367, 430, 864, 951
BstMBI	GATC	7 cut(s)	181, 202, 304, 364, 427, 861, 948
BstMCI	CGRYCG	1 cut(s)	951
BstMWI	GCNNNNNNNGC	4 cut(s)	235, 743, 752, 805
BstNI	CCWGG	4 cut(s)	240, 575, 761, 918
BstSCI	CCNGG	4 cut(s)	238, 573, 759, 916
BstSFI	CTRYAG	1 cut(s)	581
BstSNI	TACGTA	1 cut(s)	965
BstV1I	GCAGC	2 cut(s)	139, 749
BstX2I	RGATCY	2 cut(s)	364, 427
BstYI	RGATCY	2 cut(s)	364, 427
BtsCI	GGATG	4 cut(s)	283, 508, 889, 968
Cac8I	GCNNGC	1 cut(s)	810
CfoI	GCGC	2 cut(s)	36, 512
Cfr13I	GGNCC	4 cut(s)	209, 549, 577, 763
Csp6I	GTAC	4 cut(s)	91, 320, 871, 966
CviAII	CATG	6 cut(s)	124, 346, 386, 521, 599, 729
CviQI	GTAC	4 cut(s)	91, 320, 871, 966
DdeI	CTNAG	1 cut(s)	556
DpnI	GATC	7 cut(s)	183, 204, 306, 366, 429, 863, 950
DpnII	GATC	7 cut(s)	181, 202, 304, 364, 427, 861, 948
DraI	TTTAAA	1 cut(s)	616
DriI	GACNNNNNGTC	1 cut(s)	547
Eam1104I	CTCTTC	2 cut(s)	110, 238
Eam1105I	GACNNNNNGTC	1 cut(s)	547
EarI	CTCTTC	2 cut(s)	110, 238
EciI	GGCGGA	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	820
Eco105I	TACGTA	1 cut(s)	965
Eco130I	CCWWGG	2 cut(s)	39, 719
Eco24I	GRGCYC	1 cut(s)	822
Eco47I	GGWCC	4 cut(s)	209, 549, 577, 763
Eco53kI	GAGCTC	1 cut(s)	820
Eco57I	CTGAAG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	820
EcoRII	CCWGG	4 cut(s)	238, 573, 759, 916
EcoT14I	CCWWGG	2 cut(s)	39, 719
EcoT38I	GRGCYC	1 cut(s)	822
ErhI	CCWWGG	2 cut(s)	39, 719
FaeI	CATG	6 cut(s)	127, 349, 389, 524, 602, 732
FalI	AAGNNNNNCTT	4 cut(s)	104, 136, 872, 904
FaqI	GGGAC	3 cut(s)	535, 849, 889
FatI	CATG	6 cut(s)	123, 345, 385, 520, 598, 728
Fnu4HI	GCNGC	3 cut(s)	128, 735, 738
FokI	GGATG	4 cut(s)	270, 515, 896, 955
FriOI	GRGCYC	1 cut(s)	822
Fsp4HI	GCNGC	3 cut(s)	128, 735, 738
FspBI	CTAG	4 cut(s)	479, 689, 768, 800
GlaI	GCGC	2 cut(s)	35, 511
GluI	GCNGC	3 cut(s)	128, 735, 738
GsaI	CCCAGC	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	513
HhaI	GCGC	2 cut(s)	36, 512
Hin1II	CATG	6 cut(s)	127, 349, 389, 524, 602, 732
Hin6I	GCGC	2 cut(s)	34, 510
HinP1I	GCGC	2 cut(s)	34, 510
HincII	GTYRAC	1 cut(s)	827
HindII	GTYRAC	1 cut(s)	827
HinfI	GANTC	3 cut(s)	53, 380, 837
HphI	GGTGA	2 cut(s)	19, 35
Hpy166II	GTNNAC	4 cut(s)	10, 680, 686, 827
Hpy188I	TCNGA	6 cut(s)	153, 192, 202, 379, 559, 866
Hpy188III	TCNNGA	2 cut(s)	287, 353
Hpy8I	GTNNAC	4 cut(s)	10, 680, 686, 827
HpyAV	CCTTC	2 cut(s)	14, 178
HpyCH4III	ACNGT	3 cut(s)	298, 394, 528
HpyCH4IV	ACGT	2 cut(s)	682, 964
HpyCH4V	TGCA	7 cut(s)	127, 176, 229, 317, 583, 755, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	235, 743, 752, 805
HpyF3I	CTNAG	1 cut(s)	556
HpySE526I	ACGT	2 cut(s)	682, 964
Hsp92II	CATG	6 cut(s)	127, 349, 389, 524, 602, 732
HspAI	GCGC	2 cut(s)	34, 510
Kzo9I	GATC	7 cut(s)	181, 202, 304, 364, 427, 861, 948
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	2 cut(s)	817, 825
Lsp1109I	GCAGC	2 cut(s)	139, 749
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	4 cut(s)	479, 689, 768, 800
MaeII	ACGT	2 cut(s)	682, 964
MaeIII	GTNAC	2 cut(s)	292, 516
MalI	GATC	7 cut(s)	183, 204, 306, 366, 429, 863, 950
MboI	GATC	7 cut(s)	181, 202, 304, 364, 427, 861, 948
MboII	GAAGA	6 cut(s)	62, 121, 124, 127, 255, 320
MfeI	CAATTG	2 cut(s)	177, 410
MflI	RGATCY	2 cut(s)	364, 427
MhlI	GDGCHC	1 cut(s)	822
MluCI	AATT	7 cut(s)	45, 177, 410, 470, 928, 978, 984
MlyI	GAGTC	2 cut(s)	374, 831
MmeI	TCCRAC	4 cut(s)	95, 121, 402, 865
MroXI	GAANNNNTTC	2 cut(s)	119, 528
MseI	TTAA	5 cut(s)	98, 467, 486, 615, 987
MslI	CAYNNNNRTG	1 cut(s)	603
MspR9I	CCNGG	4 cut(s)	240, 575, 761, 918
MunI	CAATTG	2 cut(s)	177, 410
MvaI	CCWGG	4 cut(s)	240, 575, 761, 918
MwoI	GCNNNNNNNGC	4 cut(s)	235, 743, 752, 805
NdeII	GATC	7 cut(s)	181, 202, 304, 364, 427, 861, 948
NlaIII	CATG	6 cut(s)	127, 349, 389, 524, 602, 732
NlaIV	GGNNCC	2 cut(s)	551, 765
NmuCI	GTSAC	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	110
PdmI	GAANNNNTTC	2 cut(s)	119, 528
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	129, 736, 739
Ple19I	CGATCG	1 cut(s)	951
PleI	GAGTC	2 cut(s)	374, 831
PpsI	GAGTC	2 cut(s)	374, 831
Ppu21I	YACGTR	1 cut(s)	965
Psp124BI	GAGCTC	1 cut(s)	822
Psp6I	CCWGG	4 cut(s)	238, 573, 759, 916
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	4 cut(s)	238, 573, 759, 916
PspN4I	GGNNCC	2 cut(s)	551, 765
PspPI	GGNCC	4 cut(s)	209, 549, 577, 763
PstI	CTGCAG	1 cut(s)	585
PsuI	RGATCY	2 cut(s)	364, 427
PvuI	CGATCG	1 cut(s)	951
RsaI	GTAC	4 cut(s)	92, 321, 872, 967
RsaNI	GTAC	4 cut(s)	91, 320, 871, 966
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	822
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	5 cut(s)	98, 467, 486, 615, 987
SatI	GCNGC	3 cut(s)	128, 735, 738
Sau3AI	GATC	7 cut(s)	181, 202, 304, 364, 427, 861, 948
Sau96I	GGNCC	4 cut(s)	209, 549, 577, 763
SbfI	CCTGCAGG	1 cut(s)	585
SchI	GAGTC	2 cut(s)	374, 831
ScrFI	CCNGG	4 cut(s)	240, 575, 761, 918
SdaI	CCTGCAGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	822
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	1 cut(s)	581
SinI	GGWCC	4 cut(s)	209, 549, 577, 763
SmiMI	CAYNNNNRTG	1 cut(s)	603
SnaBI	TACGTA	1 cut(s)	965
Sse8387I	CCTGCAGG	1 cut(s)	585
Sse9I	AATT	7 cut(s)	45, 177, 410, 470, 928, 978, 984
SsiI	CCGC	2 cut(s)	308, 734
SspMI	CTAG	4 cut(s)	479, 689, 768, 800
SstI	GAGCTC	1 cut(s)	822
StyD4I	CCNGG	4 cut(s)	238, 573, 759, 916
StyI	CCWWGG	2 cut(s)	39, 719
TaaI	ACNGT	3 cut(s)	298, 394, 528
TaiI	ACGT	2 cut(s)	685, 967
TaqI	TCGA	2 cut(s)	303, 957
TasI	AATT	7 cut(s)	45, 177, 410, 470, 928, 978, 984
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	5 cut(s)	98, 467, 486, 615, 987
Tru9I	TTAA	5 cut(s)	98, 467, 486, 615, 987
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	2 cut(s)	127, 737
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	6 cut(s)	33, 112, 160, 462, 537, 717
TspGWI	ACGGA	3 cut(s)	27, 701, 812
VpaK11BI	GGWCC	4 cut(s)	209, 549, 577, 763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
XmnI	GAANNNNTTC	2 cut(s)	119, 528
XspI	CTAG	4 cut(s)	479, 689, 768, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.