Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005708

Physical Location & Seq

Genomic Coordinates Forward (+)

71879293 .. 71882972

Gene Structure 3680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0529800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGGTTCCCCAACTGTGATTGTTATAGGTCAAGCAGGGAACAAGTTTATACTTGGTGCTGAAGATGATGTTCTTGCTGCCAAACAACCTCCCACCTTGTTAGCCATTGGAGGAAAACAGAGTATATTTGAACTTACAGGATCAAGGTACAGGTTGGTAAAGGGAGCAATGGTGAGCTTCTTGAAGCCTGAAAGTCTTCAAAACTACATCAACCAGATGGACAAATTAATCAAGACCATGTTACTAAAAGAAACAGAAAACAAAGACACCATAAAGGCTGTGGTCACCATGAAGAAGCTTACATTTAACATAGCATCAAGCATCCTTTTTGGTATCAAGGATGAGAACACCAGGGGGGTCTTGTTTGAGGACTTTTCATTAGCCTTCAAAGCAACTTGGTCTCTTCCTATTAATTTCCCTGGCACTGTTTATCGGCGAGGCCTAAGAGCTAGGGCAAGAATTGTGGATTCGATTTTGCCAATACTAAAGGAGAGAAGGGAGGAAATTTCAAAGGGGAATTTAAGCCCTACAAGTGATGTGTTTTCTAGCTTTCTAGCTTTGAGAGATGAAAACCAAGAACCAGTTTCTGATGATCTGATTATGGATAATTATGTCACCTTGATGATAGCCAGTCATGACACAACAGCCATTCTTCTTAGCCTTATGATATGGAAGCTGTCCACAGACTCTGAGATCTACAAAAAAGTTTTACAAGAACAAATAGACATTACAAGTAAGAGAGAGGGAGAAGAAGATAGGCTAACATGGCAGGAGATACAAAAGATGAAATACACATGGAGAGTTGCACAAGAGTTGATGAGGATGATTCCTCCTGTGTTTGGAAGCTTTAGAAAAATACTCAAAGACACTCAATATGGTGGCTACGACATTCCCAAAGGATGGCAGGTGTTTTGGGCGGCCTATGGAACTCACATGAACAAAGAAGTATTTGACAAACCCACAGAGTTTGATCCATCGAGATTTGAAAACTCATCAAAGCCAATTCCTCCCTATGCTTATATTCCATTTGGAGGTGGCATTCACACTTGCCCTGGAAACGAGTTTGCTAGAGTTGAAGTCCTCACAACCATCCACAATTTGGTGACAATGTTTGAGTGGTCACAGGTGTACCCTGAGGAAAAGATAACCCGTCAACCAATGCCATATCCATCCATGGGTCTCCCAATCAAGATCAAACCAAGAATTCCTAAATTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

406

Amino Acids

46.28

Weight (kDa)

8.93

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 381	3.9e-60	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50030 AT1G50030
fragaria_vesca	FvH4_2g03080
malus_domestica	MD00G1031100.v1.1 MD05G1107800.v1.1 MD10G1112000.v1.1
prunus_persica	Prupe.8G151300_v2.0.a1 Prupe.8G151300_v2.0.a1 Prupe.8G151300_v2.0.a1 Prupe.8G151300_v2.0.a1 Prupe.8G151300_v2.0.a1 Prupe.8G151300_v2.0.a1
pyrus_communis	pycom05g10410 pycom10g09700
rosa_chinensis	RchiOBHm_Chr6g0247951
rosa_laevigata	RLG00000015168
rosa_multiflora	Rmu_co8352471.1_g000001 Rmu_ssc0000139.1_g000004
rosa_roxburghii	Rroxscaffold_179G00449330 Rroxscaffold_7G00213560
rosa_rugosa	Rorug05G0529700 Rorug05G0529800
rosa_samantha	Rh6AG044500 Rh6BG039500 Rh6CG038100 Rh6DG035100
rosa_wichuraiana	Rw0G021390 Rw6G003870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	895
Acc36I	ACCTGC	1 cut(s)	895
AccB7I	CCANNNNNTGG	2 cut(s)	900, 1099
AciI	CCGC	1 cut(s)	917
AclWI	GGATC	2 cut(s)	148, 965
AcsI	RAATTY	4 cut(s)	504, 517, 1203, 1211
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	149, 1130
AfiI	CCNNNNNNNGG	5 cut(s)	839, 900, 1031, 1099, 1175
AgsI	TTSAA	7 cut(s)	131, 184, 200, 388, 510, 986, 1076
AjnI	CCWGG	3 cut(s)	350, 418, 1051
AluBI	AGCT	7 cut(s)	177, 298, 449, 549, 557, 676, 846
AluI	AGCT	7 cut(s)	177, 298, 449, 549, 557, 676, 846
Alw26I	GTCTC	2 cut(s)	405, 1184
AlwI	GGATC	2 cut(s)	148, 965
AlwNI	CAGNNNCTG	2 cut(s)	587, 689
AoxI	GGCC	2 cut(s)	439, 918
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	4 cut(s)	504, 517, 1203, 1211
AseI	ATTAAT	2 cut(s)	227, 411
Asp700I	GAANNNNTTC	1 cut(s)	195
AsuHPI	GGTGA	4 cut(s)	184, 277, 607, 1114
AxyI	CCTNAGG	1 cut(s)	1134
BaeI	ACNNNNGTAYC	2 cut(s)	1112, 1145
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	5 cut(s)	211, 894, 982, 1097, 1177
BciT130I	CCWGG	3 cut(s)	352, 420, 1053
BcoDI	GTCTC	2 cut(s)	405, 1184
BfaI	CTAG	4 cut(s)	450, 546, 554, 1068
BfuAI	ACCTGC	1 cut(s)	895
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	2 cut(s)	78, 918
BlsI	GCNGC	2 cut(s)	79, 919
Bme1390I	CCNGG	3 cut(s)	352, 420, 1053
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	3 cut(s)	352, 420, 1053
BmsI	GCATC	2 cut(s)	323, 330
BpiI	GAAGAC	1 cut(s)	188
BsaI	GGTCTC	2 cut(s)	405, 1184
BsaJI	CCNNGG	4 cut(s)	351, 418, 1051, 1173
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	5 cut(s)	839, 900, 1031, 1099, 1175
Bse1I	ACTGG	2 cut(s)	581, 630
Bse21I	CCTNAGG	1 cut(s)	1134
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	3 cut(s)	352, 420, 1053
BseDI	CCNNGG	4 cut(s)	351, 418, 1051, 1173
BseGI	GGATG	6 cut(s)	321, 346, 828, 905, 1089, 1169
BseLI	CCNNNNNNNGG	5 cut(s)	839, 900, 1031, 1099, 1175
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	681, 1125
BseNI	ACTGG	2 cut(s)	581, 630
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	2 cut(s)	441, 920
BslI	CCNNNNNNNGG	5 cut(s)	839, 900, 1031, 1099, 1175
BsmAI	GTCTC	2 cut(s)	405, 1184
BsmI	GAATGC	1 cut(s)	1038
BsnI	GGCC	2 cut(s)	441, 920
Bso31I	GGTCTC	2 cut(s)	405, 1184
Bsp143I	GATC	5 cut(s)	140, 592, 693, 970, 1191
Bsp19I	CCATGG	1 cut(s)	1173
BspACI	CCGC	1 cut(s)	917
BspANI	GGCC	2 cut(s)	441, 920
BspCNI	CTCAG	2 cut(s)	682, 1126
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	895
BspPI	GGATC	2 cut(s)	148, 965
BspTNI	GGTCTC	2 cut(s)	405, 1184
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	581, 630
BssECI	CCNNGG	4 cut(s)	351, 418, 1051, 1173
BssMI	GATC	5 cut(s)	140, 592, 693, 970, 1191
BssT1I	CCWWGG	1 cut(s)	1173
Bst2UI	CCWGG	3 cut(s)	352, 420, 1053
Bst4CI	ACNGT	2 cut(s)	16, 427
Bst6I	CTCTTC	1 cut(s)	408
BstDEI	CTNAG	4 cut(s)	443, 656, 690, 1134
BstDSI	CCRYGG	1 cut(s)	1173
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	6 cut(s)	321, 346, 828, 905, 1089, 1169
BstKTI	GATC	5 cut(s)	143, 595, 696, 973, 1194
BstMAI	GTCTC	2 cut(s)	405, 1184
BstMBI	GATC	5 cut(s)	140, 592, 693, 970, 1191
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 766
BstNI	CCWGG	3 cut(s)	352, 420, 1053
BstPI	GGTNACC	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	350, 418, 1051
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	693
Bsu36I	CCTNAGG	1 cut(s)	1134
BsuRI	GGCC	2 cut(s)	441, 920
BtgI	CCRYGG	1 cut(s)	1173
BtsCI	GGATG	6 cut(s)	321, 346, 828, 905, 1089, 1169
BtsIMutI	CAGTG	1 cut(s)	423
BveI	ACCTGC	1 cut(s)	895
CaiI	CAGNNNCTG	2 cut(s)	587, 689
CciI	TCATGA	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	148, 1129
CspCI	CAANNNNNGTGG	4 cut(s)	444, 479, 949, 984
CviAII	CATG	7 cut(s)	238, 289, 635, 765, 795, 934, 1174
CviQI	GTAC	2 cut(s)	148, 1129
DdeI	CTNAG	4 cut(s)	443, 656, 690, 1134
DpnI	GATC	5 cut(s)	142, 594, 695, 972, 1193
DpnII	GATC	5 cut(s)	140, 592, 693, 970, 1191
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	1173
Eco147I	AGGCCT	1 cut(s)	441
Eco31I	GGTCTC	2 cut(s)	405, 1184
Eco57I	CTGAAG	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	1134
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	1203
EcoRII	CCWGG	3 cut(s)	350, 418, 1051
EcoT14I	CCWWGG	1 cut(s)	1173
ErhI	CCWWGG	1 cut(s)	1173
FaeI	CATG	7 cut(s)	241, 292, 638, 768, 798, 937, 1177
FatI	CATG	7 cut(s)	237, 288, 634, 764, 794, 933, 1173
Fnu4HI	GCNGC	2 cut(s)	78, 918
FokI	GGATG	6 cut(s)	308, 353, 835, 912, 1076, 1156
Fsp4HI	GCNGC	2 cut(s)	78, 918
FspBI	CTAG	4 cut(s)	450, 546, 554, 1068
GluI	GCNGC	2 cut(s)	78, 918
HaeIII	GGCC	2 cut(s)	441, 920
Hin1II	CATG	7 cut(s)	241, 292, 638, 768, 798, 937, 1177
HincII	GTYRAC	1 cut(s)	1154
HindII	GTYRAC	1 cut(s)	1154
HindIII	AAGCTT	2 cut(s)	296, 844
HinfI	GANTC	3 cut(s)	467, 686, 826
HphI	GGTGA	4 cut(s)	184, 277, 607, 1114
Hpy166II	GTNNAC	3 cut(s)	681, 1129, 1154
Hpy188I	TCNGA	3 cut(s)	589, 597, 691
Hpy188III	TCNNGA	5 cut(s)	181, 232, 635, 978, 1189
Hpy8I	GTNNAC	3 cut(s)	681, 1129, 1154
HpyAV	CCTTC	2 cut(s)	394, 489
HpyCH4III	ACNGT	2 cut(s)	16, 427
HpyCH4V	TGCA	1 cut(s)	806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 766
HpyF3I	CTNAG	4 cut(s)	443, 656, 690, 1134
Hsp92II	CATG	7 cut(s)	241, 292, 638, 768, 798, 937, 1177
Kzo9I	GATC	5 cut(s)	140, 592, 693, 970, 1191
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	323, 330
MaeI	CTAG	4 cut(s)	450, 546, 554, 1068
MaeIII	GTNAC	5 cut(s)	240, 283, 613, 1102, 1119
MalI	GATC	5 cut(s)	142, 594, 695, 972, 1193
MboI	GATC	5 cut(s)	140, 592, 693, 970, 1191
MboII	GAAGA	7 cut(s)	74, 188, 304, 395, 644, 761, 764
MflI	RGATCY	1 cut(s)	693
MlyI	GAGTC	1 cut(s)	680
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	4 cut(s)	227, 306, 411, 521
MslI	CAYNNNNRTG	1 cut(s)	620
MspR9I	CCNGG	3 cut(s)	352, 420, 1053
Mva1269I	GAATGC	1 cut(s)	1038
MvaI	CCWGG	3 cut(s)	352, 420, 1053
MwoI	GCNNNNNNNGC	2 cut(s)	389, 766
NcoI	CCATGG	1 cut(s)	1173
NdeII	GATC	5 cut(s)	140, 592, 693, 970, 1191
NlaIII	CATG	7 cut(s)	241, 292, 638, 768, 798, 937, 1177
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	4 cut(s)	283, 613, 1102, 1119
PagI	TCATGA	1 cut(s)	634
PaqCI	CACCTGC	1 cut(s)	895
PceI	AGGCCT	1 cut(s)	441
PctI	GAATGC	1 cut(s)	1038
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	467, 826
PflMI	CCANNNNNTGG	2 cut(s)	900, 1099
PkrI	GCNGC	2 cut(s)	79, 919
PleI	GAGTC	1 cut(s)	680
PpsI	GAGTC	1 cut(s)	680
PshBI	ATTAAT	2 cut(s)	227, 411
Psp6I	CCWGG	3 cut(s)	350, 418, 1051
PspEI	GGTNACC	1 cut(s)	283
PspGI	CCWGG	3 cut(s)	350, 418, 1051
PspN4I	GGNNCC	1 cut(s)	7
PstNI	CAGNNNCTG	2 cut(s)	587, 689
PsuI	RGATCY	1 cut(s)	693
RsaI	GTAC	2 cut(s)	149, 1130
RsaNI	GTAC	2 cut(s)	148, 1129
RseI	CAYNNNNRTG	1 cut(s)	620
SaqAI	TTAA	4 cut(s)	227, 306, 411, 521
SatI	GCNGC	2 cut(s)	78, 918
Sau3AI	GATC	5 cut(s)	140, 592, 693, 970, 1191
SchI	GAGTC	1 cut(s)	680
ScrFI	CCNGG	3 cut(s)	352, 420, 1053
SfaNI	GCATC	2 cut(s)	323, 330
SmiMI	CAYNNNNRTG	1 cut(s)	620
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	1 cut(s)	917
SspMI	CTAG	4 cut(s)	450, 546, 554, 1068
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	3 cut(s)	350, 418, 1051
StyI	CCWWGG	1 cut(s)	1173
TaaI	ACNGT	2 cut(s)	16, 427
TaqI	TCGA	2 cut(s)	470, 977
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	2 cut(s)	467, 826
Tru1I	TTAA	4 cut(s)	227, 306, 411, 521
Tru9I	TTAA	4 cut(s)	227, 306, 411, 521
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	4 cut(s)	283, 613, 1102, 1119
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	4 cut(s)	283, 613, 1102, 1119
TspDTI	ATGAA	5 cut(s)	305, 366, 582, 800, 950
TspRI	CASTG	1 cut(s)	430
Van91I	CCANNNNNTGG	2 cut(s)	900, 1099
VspI	ATTAAT	2 cut(s)	227, 411
XapI	RAATTY	4 cut(s)	504, 517, 1203, 1211
XcmI	CCANNNNNNNNNTGG	2 cut(s)	277, 1096
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	4 cut(s)	450, 546, 554, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.