Rmu_ssc0000139.1_g000004

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000139.1
OG0005708
Physical Location & Seq
Reverse (-)
43658 .. 46241
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000139.1_g000004.1.cds

Sequence Viewer

Length: 1248 bp
atgactgcagatgaagtggaatgccagataaaaattgctctggaatggttgcgtggagacagaattgagtatcgacgttttgctgccgtcttgattttgaaagagatggcagaaaatgcttccacggtgttcaatgttcatgtacctgagtttgttgatgctatctgggttgctttgagagatccagtattggctatccgagagcgagctgtggaagctctgcgtgcttgccttggtgttattgagaaacgtgagacacgatggcgtgtgcaatggtattatcgtatgttcgaagctacacaggatggattgggtaaaaatgcttctgttcacagcatacatggttctttacttgcagttggagagcttttaaggaatacaggtgaattcatgatgtcaaggtatagggaagttgcagaaattgtccttaggtatcttgaccacaaggataggctggttcgcctgagcataacttcactgctacctcgaattgctcattttctgcgtgatcgatttgttacaaactacttagagacatgtatgaatcatatcctcgctgttttgcgacaatcagctgaactacgctccagtggttttattgcacttggggagatggctggtgctttggacggggaactgtttttgtatttgagccaaattacacctcacttacgtgaagcaattgctccacgtagagggcgaccctcacttgaggctttggcttgtgttggaaatattgcaaaagcaatggggcctgctatggaacatgatgttcgtggtcttttggatgttatgttcgctgctggtctttcctctacgcttgttgaggcccttgaaaagataactgccagtataccatctttgctgcctaccatccaagatcggttgctagaatgcatttcagtggttctttcaaaatcccaacatcctcagggaaggccagttgttggaatgggtagaggaaatttaataaatatccctcagcaagtttcagacctcagtggctcatcccttgtgcagcttgctttgcagactctagctcgtttcaatttcaagggtcacgaccttcttgaatttgcaagagaatcagttgttgtatatttggatgatgatgacggagccatccgaaaagatgctgccctttgttgttgcagattggttgcaaattccttttctggtgtacaatatgcttctggtaggtcaaatcggggaaagcgacgccgtcttgtcgaggaggttcgttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0001558 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005844 GO:0006139 GO:0006259 GO:0006281 GO:0006351 GO:0006355 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009303 GO:0009605 GO:0009606 GO:0009607 GO:0009615 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009733 GO:0009743 GO:0009744 GO:0009745 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010182 GO:0010243 GO:0010467 GO:0010468 GO:0010506 GO:0010507 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0016070 GO:0016072 GO:0016301 GO:0016303 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019216 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019637 GO:0019747 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030307 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035004 GO:0036092 GO:0036211 GO:0040008 GO:0040019 GO:0042221 GO:0042493 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043455 GO:0043621 GO:0043900 GO:0043901 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045017 GO:0045472 GO:0045828 GO:0045834 GO:0045893 GO:0045927 GO:0045935 GO:0045995 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046677 GO:0046834 GO:0046854 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050687 GO:0050688 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0052742 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0080090 GO:0080134 GO:0090069 GO:0090070 GO:0090304 GO:0090407 GO:0097159 GO:0097305 GO:0097327 GO:0097659 GO:0098781 GO:0140096 GO:1900457 GO:1900459 GO:1901355 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901654 GO:1901698 GO:1901700 GO:1901701 GO:1902659 GO:1902661 GO:1902680 GO:1902930 GO:1902932 GO:1903506 GO:1903508 GO:1990904 GO:2000026 GO:2000112 GO:2000232 GO:2000234 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko04012 ko04066 ko04072 ko04136 ko04138 ko04139 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04218 ko04371 ko04630 ko04659 ko04714 ko04910 ko04919 ko04920 ko04930 ko04931 ko05165 ko05167 ko05200 ko05205 ko05206 ko05210 ko05212 ko05214 ko05215 ko05221 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map04012 map04066 map04072 map04136 map04138 map04139 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04218 map04371 map04630 map04659 map04714 map04910 map04919 map04920 map04930 map04931 map05165 map05167 map05200 map05205 map05206 map05210 map05212 map05214 map05215 map05221 map05224 map05225 map05226 map05230 map05231
Pfam Domains
Protein Families
DUF3385 FAT FATC FRB_dom PI3_PI4_kinase

Protein Analysis

415

Amino Acids

46.43

Weight (kDa)

8.39

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 947
AccI GTMKAC 1 cut(s) 853
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 4 cut(s) 386, 964, 1073, 1165
AcyI GRCGYC 1 cut(s) 1219
AfaI GTAC 2 cut(s) 144, 1182
AfiI CCNNNNNNNGG 2 cut(s) 695, 947
AflIII ACRYGT 1 cut(s) 536
AgsI TTSAA 7 cut(s) 100, 133, 836, 915, 1048, 1054, 1073
AleI CACNNNNGTG 1 cut(s) 672
AloI GAACNNNNNNTCC 2 cut(s) 779, 811
AluBI AGCT 7 cut(s) 209, 218, 296, 367, 575, 1021, 1040
AluI AGCT 7 cut(s) 209, 218, 296, 367, 575, 1021, 1040
Alw26I GTCTC 3 cut(s) 51, 248, 527
AlwI GGATC 1 cut(s) 176
AoxI GGCC 3 cut(s) 752, 828, 938
ApeKI GCWGC 5 cut(s) 83, 800, 865, 1018, 1136
ApoI RAATTY 4 cut(s) 386, 964, 1073, 1165
AspS9I GGNCC 2 cut(s) 752, 829
AsuHPI GGTGA 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 291
AxyI CCTNAGG 2 cut(s) 428, 930
BarI GAAGNNNNNNTAC 2 cut(s) 307, 339
BbvCI CCTCAGC 1 cut(s) 981
BbvI GCAGC 5 cut(s) 70, 787, 852, 1030, 1123
BccI CCATC 7 cut(s) 100, 255, 299, 607, 865, 881, 1130
BceAI ACGGC 2 cut(s) 71, 1206
BcoDI GTCTC 3 cut(s) 51, 248, 527
BfaI CTAG 2 cut(s) 890, 1037
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 5 cut(s) 84, 801, 866, 1019, 1137
BlsI GCNGC 5 cut(s) 85, 802, 867, 1020, 1138
BmgT120I GGNCC 2 cut(s) 752, 829
BmiI GGNNCC 2 cut(s) 753, 1120
BmsI GCATC 2 cut(s) 148, 1123
BpmI CTGGAG 1 cut(s) 571
Bpu10I CCTNAGC 2 cut(s) 464, 981
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 731
Bsa29I ATCGAT 1 cut(s) 511
BsaAI YACGTR 2 cut(s) 674, 692
BsaHI GRCGYC 1 cut(s) 1219
BsaJI CCNNGG 2 cut(s) 123, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 695, 947
Bse1I ACTGG 4 cut(s) 185, 588, 849, 941
Bse21I CCTNAGG 2 cut(s) 428, 930
Bse3DI GCAATG 2 cut(s) 278, 753
BseCI ATCGAT 1 cut(s) 511
BseDI CCNNGG 2 cut(s) 123, 232
BseGI GGATG 7 cut(s) 310, 793, 873, 925, 1007, 1111, 1122
BseLI CCNNNNNNNGG 2 cut(s) 695, 947
BseMI GCAATG 2 cut(s) 278, 753
BseMII CTCAG 5 cut(s) 138, 455, 944, 995, 1012
BseNI ACTGG 4 cut(s) 185, 588, 849, 941
BseRI GAGGAG 1 cut(s) 1247
BseXI GCAGC 5 cut(s) 70, 787, 852, 1030, 1123
BsgI GTGCAG 1 cut(s) 1037
BshFI GGCC 3 cut(s) 754, 830, 940
BshVI ATCGAT 1 cut(s) 511
BslI CCNNNNNNNGG 2 cut(s) 695, 947
BsmAI GTCTC 3 cut(s) 51, 248, 527
BsmI GAATGC 2 cut(s) 26, 899
BsnI GGCC 3 cut(s) 754, 830, 940
Bsp119I TTCGAA 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 1180
Bsp143I GATC 3 cut(s) 181, 508, 880
BspANI GGCC 3 cut(s) 754, 830, 940
BspCNI CTCAG 5 cut(s) 139, 456, 943, 994, 1011
BspDI ATCGAT 1 cut(s) 511
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 753, 1120
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 291
BsrDI GCAATG 2 cut(s) 278, 753
BsrGI TGTACA 1 cut(s) 1180
BsrI ACTGG 4 cut(s) 185, 588, 849, 941
BssECI CCNNGG 2 cut(s) 123, 232
BssMI GATC 3 cut(s) 181, 508, 880
BssNAI GTATAC 1 cut(s) 854
BssNI GRCGYC 1 cut(s) 1219
BssT1I CCWWGG 1 cut(s) 232
Bst1107I GTATAC 1 cut(s) 854
Bst4CI ACNGT 2 cut(s) 127, 639
BstACI GRCGYC 1 cut(s) 1219
BstAPI GCANNNNNTGC 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 1180
BstBAI YACGTR 2 cut(s) 674, 692
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 5 cut(s) 207, 225, 229, 756, 1023
BstDEI CTNAG 7 cut(s) 147, 428, 464, 529, 930, 981, 998
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 7 cut(s) 310, 793, 873, 925, 1007, 1111, 1122
BstKTI GATC 3 cut(s) 184, 511, 883
BstMAI GTCTC 3 cut(s) 51, 248, 527
BstMBI GATC 3 cut(s) 181, 508, 880
BstMWI GCNNNNNNNGC 4 cut(s) 116, 215, 224, 1027
BstNSI RCATGY 1 cut(s) 540
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 5 cut(s) 70, 787, 852, 1030, 1123
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BstZ17I GTATAC 1 cut(s) 854
Bsu15I ATCGAT 1 cut(s) 511
Bsu36I CCTNAGG 2 cut(s) 428, 930
BsuRI GGCC 3 cut(s) 754, 830, 940
BsuTUI ATCGAT 1 cut(s) 511
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 7 cut(s) 310, 793, 873, 925, 1007, 1111, 1122
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 4 cut(s) 476, 595, 909, 1006
Cac8I GCNNGC 5 cut(s) 207, 225, 229, 756, 1023
CciI TCATGA 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 752, 829
ClaI ATCGAT 1 cut(s) 511
CseI GACGC 1 cut(s) 1227
Csp6I GTAC 2 cut(s) 143, 1181
CviAII CATG 5 cut(s) 140, 341, 391, 537, 767
CviQI GTAC 2 cut(s) 143, 1181
DdeI CTNAG 7 cut(s) 147, 428, 464, 529, 930, 981, 998
DpnI GATC 3 cut(s) 183, 510, 882
DpnII GATC 3 cut(s) 181, 508, 880
Eco130I CCWWGG 1 cut(s) 232
Eco81I CCTNAGG 2 cut(s) 428, 930
EcoO109I RGGNCCY 2 cut(s) 752, 829
EcoRI GAATTC 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 899
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 5 cut(s) 143, 344, 394, 540, 770
FatI CATG 5 cut(s) 139, 340, 390, 536, 766
FblI GTMKAC 1 cut(s) 853
Fnu4HI GCNGC 5 cut(s) 84, 801, 866, 1019, 1137
FokI GGATG 7 cut(s) 317, 800, 860, 912, 994, 1109, 1118
Fsp4HI GCNGC 5 cut(s) 84, 801, 866, 1019, 1137
FspBI CTAG 2 cut(s) 890, 1037
GluI GCNGC 5 cut(s) 84, 801, 866, 1019, 1137
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 3 cut(s) 754, 830, 940
HgaI GACGC 1 cut(s) 1227
Hin1I GRCGYC 1 cut(s) 1219
Hin1II CATG 5 cut(s) 143, 344, 394, 540, 770
HinfI GANTC 3 cut(s) 544, 1033, 1085
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 3 cut(s) 331, 854, 1181
Hpy188I TCNGA 3 cut(s) 200, 994, 1127
Hpy188III TCNNGA 7 cut(s) 41, 91, 391, 437, 1061, 1070, 1245
Hpy8I GTNNAC 3 cut(s) 331, 854, 1181
Hpy99I CGWCG 2 cut(s) 78, 1221
HpyAV CCTTC 2 cut(s) 930, 1076
HpyCH4III ACNGT 2 cut(s) 127, 639
HpyCH4IV ACGT 4 cut(s) 76, 250, 673, 691
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 215, 224, 1027
HpyF3I CTNAG 7 cut(s) 147, 428, 464, 529, 930, 981, 998
HpySE526I ACGT 4 cut(s) 76, 250, 673, 691
Hsp92I GRCGYC 1 cut(s) 1219
Hsp92II CATG 5 cut(s) 143, 344, 394, 540, 770
Kzo9I GATC 3 cut(s) 181, 508, 880
LmnI GCTCC 3 cut(s) 590, 691, 1118
Lsp1109I GCAGC 5 cut(s) 70, 787, 852, 1030, 1123
LweI GCATC 2 cut(s) 148, 1123
MaeI CTAG 2 cut(s) 890, 1037
MaeII ACGT 4 cut(s) 76, 250, 673, 691
MaeIII GTNAC 2 cut(s) 517, 1058
MalI GATC 3 cut(s) 183, 510, 882
MboI GATC 3 cut(s) 181, 508, 880
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 1 cut(s) 181
MlyI GAGTC 1 cut(s) 1027
MmeI TCCRAC 3 cut(s) 340, 709, 928
Mph1103I ATGCAT 1 cut(s) 899
MseI TTAA 2 cut(s) 371, 968
MslI CAYNNNNRTG 2 cut(s) 672, 902
MspA1I CMGCKG 1 cut(s) 575
MunI CAATTG 1 cut(s) 681
Mva1269I GAATGC 2 cut(s) 26, 899
MwoI GCNNNNNNNGC 4 cut(s) 116, 215, 224, 1027
NdeII GATC 3 cut(s) 181, 508, 880
NlaIII CATG 5 cut(s) 143, 344, 394, 540, 770
NlaIV GGNNCC 2 cut(s) 753, 1120
NmuCI GTSAC 1 cut(s) 1058
NsiI ATGCAT 1 cut(s) 899
NspI RCATGY 1 cut(s) 540
NspV TTCGAA 1 cut(s) 291
OliI CACNNNNGTG 1 cut(s) 672
PagI TCATGA 1 cut(s) 390
PciI ACATGT 1 cut(s) 536
PcsI WCGNNNNNNNCGW 3 cut(s) 256, 697, 1213
PctI GAATGC 2 cut(s) 26, 899
PfeI GAWTC 2 cut(s) 544, 1085
PflFI GACNNNGTC 1 cut(s) 1221
PflMI CCANNNNNTGG 1 cut(s) 947
PkrI GCNGC 5 cut(s) 85, 802, 867, 1020, 1138
PleI GAGTC 1 cut(s) 1027
PpsI GAGTC 1 cut(s) 1027
Ppu21I YACGTR 2 cut(s) 674, 692
PscI ACATGT 1 cut(s) 536
PspN4I GGNNCC 2 cut(s) 753, 1120
PspPI GGNCC 2 cut(s) 752, 829
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 1221
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 144, 1182
RsaNI GTAC 2 cut(s) 143, 1181
RseI CAYNNNNRTG 2 cut(s) 672, 902
SaqAI TTAA 2 cut(s) 371, 968
SatI GCNGC 5 cut(s) 84, 801, 866, 1019, 1137
Sau3AI GATC 3 cut(s) 181, 508, 880
Sau96I GGNCC 2 cut(s) 752, 829
SchI GAGTC 1 cut(s) 1027
SfaNI GCATC 2 cut(s) 148, 1123
SfcI CTRYAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 291
SmiMI CAYNNNNRTG 2 cut(s) 672, 902
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SspI AATATT 1 cut(s) 736
SspMI CTAG 2 cut(s) 890, 1037
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 127, 639
TaiI ACGT 4 cut(s) 79, 253, 676, 694
TaqI TCGA 5 cut(s) 73, 291, 487, 511, 1230
TatI WGTACW 1 cut(s) 1180
TfiI GAWTC 2 cut(s) 544, 1085
Tru1I TTAA 2 cut(s) 371, 968
Tru9I TTAA 2 cut(s) 371, 968
TscAI CASTG 4 cut(s) 483, 595, 909, 1006
TseFI GTSAC 1 cut(s) 1058
TseI GCWGC 5 cut(s) 83, 800, 865, 1018, 1136
Tsp45I GTSAC 1 cut(s) 1058
TspDTI ATGAA 4 cut(s) 27, 128, 379, 557
TspGWI ACGGA 1 cut(s) 1131
TspRI CASTG 4 cut(s) 483, 595, 909, 1006
Tth111I GACNNNGTC 1 cut(s) 1221
Van91I CCANNNNNTGG 1 cut(s) 947
XapI RAATTY 4 cut(s) 386, 964, 1073, 1165
XceI RCATGY 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 853
XspI CTAG 2 cut(s) 890, 1037
Zsp2I ATGCAT 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.