Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8352471.1

Orthogroup ID

OG0005708

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 784

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8352471.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgtaccctctcctagtagcctgtaaatcaataagtaatttacgcaaagctgccgctcaagaagtggttgacaaagttcgacagcatagtggtttacttgtggatcaggcacaacttgtttcaacggaactaatccgggtcgcaatactttggcatgaaatgtggcatgaggctctggaagaagctagtcgtctgtattttggtgaacataacattgagggcatgctaaaagtattggagccattgcatgaaatgctcgaggaaggggctatgaagaataataccactataaaagagacaacattcattgaggcctatcgtcatgaattgctggaggcttatgaatgttgcatgaaatataagagaactggaaaagatgccgagcttactcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001558 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005844 GO:0006139 GO:0006259 GO:0006281 GO:0006351 GO:0006355 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009303 GO:0009605 GO:0009606 GO:0009607 GO:0009615 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009733 GO:0009743 GO:0009744 GO:0009745 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010182 GO:0010243 GO:0010467 GO:0010468 GO:0010506 GO:0010507 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0016070 GO:0016072 GO:0016301 GO:0016303 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019216 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0019637 GO:0019747 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030307 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035004 GO:0036092 GO:0036211 GO:0040008 GO:0040019 GO:0042221 GO:0042493 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043455 GO:0043621 GO:0043900 GO:0043901 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045017 GO:0045472 GO:0045828 GO:0045834 GO:0045893 GO:0045927 GO:0045935 GO:0045995 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046677 GO:0046834 GO:0046854 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050687 GO:0050688 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0052742 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0080090 GO:0080134 GO:0090069 GO:0090070 GO:0090304 GO:0090407 GO:0097159 GO:0097305 GO:0097327 GO:0097659 GO:0098781 GO:0140096 GO:1900457 GO:1900459 GO:1901355 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901654 GO:1901698 GO:1901700 GO:1901701 GO:1902659 GO:1902661 GO:1902680 GO:1902930 GO:1902932 GO:1903506 GO:1903508 GO:1990904 GO:2000026 GO:2000112 GO:2000232 GO:2000234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04012 ko04066 ko04072 ko04136 ko04138 ko04139 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04218 ko04371 ko04630 ko04659 ko04714 ko04910 ko04919 ko04920 ko04930 ko04931 ko05165 ko05167 ko05200 ko05205 ko05206 ko05210 ko05212 ko05214 ko05215 ko05221 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map04012 map04066 map04072 map04136 map04138 map04139 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04218 map04371 map04630 map04659 map04714 map04910 map04919 map04920 map04930 map04931 map05165 map05167 map05200 map05205 map05206 map05210 map05212 map05214 map05215 map05221 map05224 map05225 map05226 map05230 map05231

Pfam Domains

Protein Families

DUF3385 FAT FATC FRB_dom PI3_PI4_kinase

Protein Analysis

131

Amino Acids

15.15

Weight (kDa)

5.51

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50030 AT1G50030
fragaria_vesca	FvH4_2g03080
malus_domestica	MD00G1031100.v1.1 MD05G1107800.v1.1 MD10G1112000.v1.1
prunus_persica	Prupe.8G151300_v2.0.a1 Prupe.8G151300_v2.0.a1 Prupe.8G151300_v2.0.a1 Prupe.8G151300_v2.0.a1 Prupe.8G151300_v2.0.a1 Prupe.8G151300_v2.0.a1
pyrus_communis	pycom05g10410 pycom10g09700
rosa_chinensis	RchiOBHm_Chr6g0247951
rosa_laevigata	RLG00000015168
rosa_multiflora	Rmu_co8352471.1_g000001 Rmu_ssc0000139.1_g000004
rosa_roxburghii	Rroxscaffold_179G00449330 Rroxscaffold_7G00213560
rosa_rugosa	Rorug05G0529700 Rorug05G0529800
rosa_samantha	Rh6AG044500 Rh6BG039500 Rh6CG038100 Rh6DG035100
rosa_wichuraiana	Rw0G021390 Rw6G003870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	56
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	123
AluBI	AGCT	3 cut(s)	50, 185, 385
AluI	AGCT	3 cut(s)	50, 185, 385
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	111
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	2 cut(s)	14, 186
BisI	GCNGC	2 cut(s)	51, 54
BlsI	GCNGC	2 cut(s)	52, 55
Bme1390I	CCNGG	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	373
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	314
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	373
BssMI	GATC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	390
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	224
CciI	TCATGA	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	6 cut(s)	155, 167, 223, 248, 323, 352
CviJI	RGCY	9 cut(s)	20, 50, 173, 185, 241, 269, 314, 338, 385
CviKI_1	RGCY	9 cut(s)	20, 50, 173, 185, 241, 269, 314, 338, 385
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	257
FaeI	CATG	6 cut(s)	158, 170, 226, 251, 326, 355
FatI	CATG	6 cut(s)	154, 166, 222, 247, 322, 351
Fnu4HI	GCNGC	2 cut(s)	51, 54
Fsp4HI	GCNGC	2 cut(s)	51, 54
FspBI	CTAG	2 cut(s)	14, 186
GluI	GCNGC	2 cut(s)	51, 54
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	1 cut(s)	136
Hin1II	CATG	6 cut(s)	158, 170, 226, 251, 326, 355
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	3 cut(s)	70, 95, 206
Hpy188III	TCNNGA	3 cut(s)	59, 176, 323
Hpy8I	GTNNAC	3 cut(s)	70, 95, 206
HpyAV	CCTTC	1 cut(s)	257
HpyCH4V	TGCA	2 cut(s)	247, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	6 cut(s)	158, 170, 226, 251, 326, 355
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	6 cut(s)	34, 92, 149, 161, 317, 354
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	14, 186
MalI	GATC	1 cut(s)	105
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	191, 286
MluCI	AATT	2 cut(s)	37, 326
MnlI	CCTC	6 cut(s)	18, 163, 211, 253, 304, 328
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	6 cut(s)	158, 170, 226, 251, 326, 355
NlaIV	GGNNCC	1 cut(s)	240
NspI	RCATGY	1 cut(s)	226
PaeI	GCATGC	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	257
PagI	TCATGA	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	52, 55
PspN4I	GGNNCC	1 cut(s)	240
PspXI	VCTCGAGB	1 cut(s)	257
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	51, 54
Sau3AI	GATC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	3 cut(s)	52, 187, 387
SfaNI	GCATC	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	57, 257
SmoI	CTYRAG	2 cut(s)	57, 257
SphI	GCATGC	1 cut(s)	226
Sse9I	AATT	2 cut(s)	37, 326
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	2 cut(s)	14, 186
StuI	AGGCCT	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	135
TaqI	TCGA	2 cut(s)	79, 258
TasI	AATT	2 cut(s)	37, 326
TauI	GCSGC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	7 cut(s)	171, 264, 287, 295, 339, 357, 368
TspGWI	ACGGA	1 cut(s)	140
XceI	RCATGY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	257
XspI	CTAG	2 cut(s)	14, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.