Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000179

Orthogroup ID

OG0007072

Physical Location & Seq

Genomic Coordinates Forward (+)

21105 .. 26181

Gene Structure 5077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_179G00449320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGGGTGAACGGAGATGAAGGTGAGGACAAGCACACCAACGAAATTGAACAAGTTGAAGAATCGGGTTCGGTTGTTCCAACCAAGCTGGTTGTTGGGTACGCCTTAACTTCAAAGAAGAAGAAGAGCTTCATGCAGCCTAAACTTGTTGGATTGGCTCGGAATAAGGGTATATCCTTCATTGCAATTGATCCAAATCGGACACTTTCAGATCAAGGTCCGTTTGATGTTGTTTTGCATAAGTTGCCAGGAAGAGAATGGTGCGAGGTTATAGAGGAATACAGGCAAAAACATCCAGAAGTAACTGTCCTCGATCCGCCAAATGCGGTACTGCATCTTCACAATCGCCAGTCCATGCTTCAAGATGTGGCAGATCTAAACTTGTCCGACTCCCACGGAACGGTTTGTGTTCCAAAACAATTGACTATCACAAAAGATCCATCATCTATTCCTAATGAAGTAGCTAAAGCTGGGCTAAAATTGCCGCTAGTTGTTAAACCACTATTGGTGGATGGTAGCGCCAAGTCACATGAACTGTTTCTTGCTTATGACCAATGCTCCCTCACAGAGCTTGAACCTCCCCTTGTCCTGCAGGAGTTTGTAAATCATGGTGGTGTCCTCTTTAAAATATATATTGTCGGGGAAGCCATAAAGGTTGTAAGGCGTTTCTCTCTCCCTAATATCAGTAAACGTGAACTAGAAAAACTTGCTGGTGTTTTCCGTTTCCCGAGGGTTTCATGTGCGGCAGCTTCAGCAGATGATGCAGACCTGGACCCTAGTATTGCTGGGACTCCGGCTATTCAATGTAGATATGATCCGAGAGTACGGGACAAAGGATGTCTTTTATGTAGTGGTGGATCATTGAAACTGGATATTATTGGTTTTGGTTGTTTGGTCTGGTACGGGAAAATGCCTGAGTATGAACACATCTTCACAGATTTTCTACTAAGCCTTCCGCAGATCATGTACAAGAAGAGACCTGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

329

Amino Acids

36.45

Weight (kDa)

6.76

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	31 - 110	1.1e-35	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	130 - 266	6.9e-56	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33770
fragaria_vesca	FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090
malus_domestica	MD00G1031200.v1.1
prunus_persica	Prupe.8G151200_v2.0.a1 Prupe.8G151200_v2.0.a1
pyrus_communis	pycom10g09690
rosa_chinensis	RchiOBHm_Chr6g0247961
rosa_laevigata	RLG00000015167
rosa_multiflora	Rmu_ssc0000139.1_g000003
rosa_roxburghii	Rroxscaffold_179G00449320 Rroxscaffold_7G00213550
rosa_rugosa	Rorug05G0529800 Rorug05G0529800
rosa_samantha	Rh6AG044600 Rh6BG039600 Rh6CG038200 Rh6DG035200
rosa_wichuraiana	Rw6G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	317, 326, 485, 743, 956
AclWI	GGATC	5 cut(s)	185, 308, 431, 809, 865
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	5 cut(s)	101, 330, 825, 902, 968
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgsI	TTSAA	7 cut(s)	50, 59, 114, 362, 575, 803, 865
AjnI	CCWGG	2 cut(s)	247, 768
AluBI	AGCT	6 cut(s)	88, 129, 464, 470, 571, 749
AluI	AGCT	6 cut(s)	88, 129, 464, 470, 571, 749
Alw26I	GTCTC	1 cut(s)	970
AlwI	GGATC	5 cut(s)	185, 308, 431, 809, 865
Ama87I	CYCGRG	1 cut(s)	727
ApeKI	GCWGC	2 cut(s)	136, 746
Asp700I	GAANNNNTTC	2 cut(s)	128, 537
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	2 cut(s)	218, 772
AsuHPI	GGTGA	2 cut(s)	19, 35
AvaI	CYCGRG	1 cut(s)	727
AvaII	GGWCC	2 cut(s)	218, 772
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BbvI	GCAGC	2 cut(s)	148, 758
BccI	CCATC	2 cut(s)	448, 506
BciT130I	CCWGG	2 cut(s)	249, 770
BcoDI	GTCTC	1 cut(s)	970
BfaI	CTAG	3 cut(s)	488, 698, 777
BfmI	CTRYAG	1 cut(s)	590
BfoI	RGCGCY	1 cut(s)	522
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	4 cut(s)	137, 485, 744, 747
BlsI	GCNGC	4 cut(s)	138, 486, 745, 748
Bme1390I	CCNGG	2 cut(s)	249, 770
Bme18I	GGWCC	2 cut(s)	218, 772
BmeT110I	CYCGRG	1 cut(s)	727
BmgT120I	GGNCC	2 cut(s)	218, 772
BmiI	GGNNCC	1 cut(s)	774
BmrFI	CCNGG	2 cut(s)	249, 770
BmsI	GCATC	2 cut(s)	343, 751
BsaBI	GATNNNNATC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	970
BsaJI	CCNNGG	2 cut(s)	394, 728
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse1I	ACTGG	2 cut(s)	349, 873
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	249, 770
BseDI	CCNNGG	2 cut(s)	394, 728
BseGI	GGATG	3 cut(s)	292, 517, 842
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	906
BseNI	ACTGG	2 cut(s)	349, 873
BseXI	GCAGC	2 cut(s)	148, 758
BseYI	CCCAGC	2 cut(s)	470, 785
BsiHKCI	CYCGRG	1 cut(s)	727
BsiSI	CCGG	1 cut(s)	794
BslFI	GGGAC	2 cut(s)	802, 842
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	970
BsmFI	GGGAC	2 cut(s)	802, 842
Bso31I	GGTCTC	1 cut(s)	970
BsoBI	CYCGRG	1 cut(s)	727
Bsp1407I	TGTACA	1 cut(s)	966
Bsp143I	GATC	8 cut(s)	190, 211, 313, 373, 436, 814, 857, 960
BspACI	CCGC	5 cut(s)	317, 326, 485, 743, 956
BspCNI	CTCAG	1 cut(s)	907
BspLI	GGNNCC	1 cut(s)	774
BspMAI	CTGCAG	1 cut(s)	594
BspPI	GGATC	5 cut(s)	185, 308, 431, 809, 865
BspQI	GCTCTTC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	970
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	966
BsrI	ACTGG	2 cut(s)	349, 873
BssECI	CCNNGG	2 cut(s)	394, 728
BssMI	GATC	8 cut(s)	190, 211, 313, 373, 436, 814, 857, 960
Bst2UI	CCWGG	2 cut(s)	249, 770
Bst4CI	ACNGT	3 cut(s)	307, 403, 537
Bst6I	CTCTTC	3 cut(s)	119, 247, 968
BstAPI	GCANNNNNTGC	2 cut(s)	244, 761
BstAUI	TGTACA	1 cut(s)	966
BstDEI	CTNAG	2 cut(s)	915, 947
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	3 cut(s)	292, 517, 842
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	8 cut(s)	193, 214, 316, 376, 439, 817, 860, 963
BstMAI	GTCTC	1 cut(s)	970
BstMBI	GATC	8 cut(s)	190, 211, 313, 373, 436, 814, 857, 960
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 481, 752, 761
BstNI	CCWGG	2 cut(s)	249, 770
BstSCI	CCNGG	2 cut(s)	247, 768
BstSFI	CTRYAG	1 cut(s)	590
BstV1I	GCAGC	2 cut(s)	148, 758
BstX2I	RGATCY	2 cut(s)	373, 436
BstYI	RGATCY	2 cut(s)	373, 436
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	292, 517, 842
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	218, 772
Csp6I	GTAC	5 cut(s)	100, 329, 824, 901, 967
CviAII	CATG	6 cut(s)	133, 355, 530, 608, 738, 964
CviQI	GTAC	5 cut(s)	100, 329, 824, 901, 967
DdeI	CTNAG	2 cut(s)	915, 947
DpnI	GATC	8 cut(s)	192, 213, 315, 375, 438, 816, 859, 962
DpnII	GATC	8 cut(s)	190, 211, 313, 373, 436, 814, 857, 960
DraI	TTTAAA	1 cut(s)	625
Eam1104I	CTCTTC	3 cut(s)	119, 247, 968
EarI	CTCTTC	3 cut(s)	119, 247, 968
EciI	GGCGGA	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	970
Eco47I	GGWCC	2 cut(s)	218, 772
Eco57I	CTGAAG	1 cut(s)	735
Eco88I	CYCGRG	1 cut(s)	727
EcoRII	CCWGG	2 cut(s)	247, 768
FaeI	CATG	6 cut(s)	136, 358, 533, 611, 741, 967
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 825, 857
FaqI	GGGAC	2 cut(s)	802, 842
FatI	CATG	6 cut(s)	132, 354, 529, 607, 737, 963
Fnu4HI	GCNGC	4 cut(s)	137, 485, 744, 747
FokI	GGATG	3 cut(s)	279, 524, 849
Fsp4HI	GCNGC	4 cut(s)	137, 485, 744, 747
FspBI	CTAG	3 cut(s)	488, 698, 777
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	4 cut(s)	137, 485, 744, 747
GsaI	CCCAGC	2 cut(s)	474, 789
HaeII	RGCGCY	1 cut(s)	522
HapII	CCGG	1 cut(s)	794
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	6 cut(s)	136, 358, 533, 611, 741, 967
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	62, 389, 790
HpaII	CCGG	1 cut(s)	794
HphI	GGTGA	2 cut(s)	19, 35
Hpy166II	GTNNAC	3 cut(s)	10, 689, 695
Hpy188I	TCNGA	5 cut(s)	162, 201, 211, 388, 819
Hpy188III	TCNNGA	3 cut(s)	296, 362, 727
Hpy8I	GTNNAC	3 cut(s)	10, 689, 695
HpyAV	CCTTC	3 cut(s)	14, 187, 962
HpyCH4III	ACNGT	3 cut(s)	307, 403, 537
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	6 cut(s)	136, 185, 238, 334, 592, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 481, 752, 761
HpyF3I	CTNAG	2 cut(s)	915, 947
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	6 cut(s)	136, 358, 533, 611, 741, 967
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	8 cut(s)	190, 211, 313, 373, 436, 814, 857, 960
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	563
Lsp1109I	GCAGC	2 cut(s)	148, 758
LweI	GCATC	2 cut(s)	343, 751
MaeI	CTAG	3 cut(s)	488, 698, 777
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	2 cut(s)	301, 525
MalI	GATC	8 cut(s)	192, 213, 315, 375, 438, 816, 859, 962
MboI	GATC	8 cut(s)	190, 211, 313, 373, 436, 814, 857, 960
MboII	GAAGA	8 cut(s)	71, 130, 133, 136, 264, 329, 922, 985
MfeI	CAATTG	2 cut(s)	186, 419
MflI	RGATCY	2 cut(s)	373, 436
MluCI	AATT	4 cut(s)	45, 186, 419, 479
MlyI	GAGTC	2 cut(s)	383, 784
MmeI	TCCRAC	3 cut(s)	104, 130, 411
MnlI	CCTC	8 cut(s)	19, 259, 268, 320, 572, 588, 629, 723
MroXI	GAANNNNTTC	2 cut(s)	128, 537
MseI	TTAA	4 cut(s)	107, 495, 624, 988
MslI	CAYNNNNRTG	1 cut(s)	612
MspI	CCGG	1 cut(s)	794
MspR9I	CCNGG	2 cut(s)	249, 770
MunI	CAATTG	2 cut(s)	186, 419
MvaI	CCWGG	2 cut(s)	249, 770
MwoI	GCNNNNNNNGC	4 cut(s)	244, 481, 752, 761
NdeII	GATC	8 cut(s)	190, 211, 313, 373, 436, 814, 857, 960
NlaIII	CATG	6 cut(s)	136, 358, 533, 611, 741, 967
NlaIV	GGNNCC	1 cut(s)	774
NmuCI	GTSAC	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	119
PdmI	GAANNNNTTC	2 cut(s)	128, 537
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	4 cut(s)	138, 486, 745, 748
PleI	GAGTC	2 cut(s)	383, 784
PpsI	GAGTC	2 cut(s)	383, 784
Psp6I	CCWGG	2 cut(s)	247, 768
PspFI	CCCAGC	2 cut(s)	470, 785
PspGI	CCWGG	2 cut(s)	247, 768
PspN4I	GGNNCC	1 cut(s)	774
PspPI	GGNCC	2 cut(s)	218, 772
PstI	CTGCAG	1 cut(s)	594
PsuI	RGATCY	2 cut(s)	373, 436
RsaI	GTAC	5 cut(s)	101, 330, 825, 902, 968
RsaNI	GTAC	5 cut(s)	100, 329, 824, 901, 967
RseI	CAYNNNNRTG	1 cut(s)	612
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	107, 495, 624, 988
SatI	GCNGC	4 cut(s)	137, 485, 744, 747
Sau3AI	GATC	8 cut(s)	190, 211, 313, 373, 436, 814, 857, 960
Sau96I	GGNCC	2 cut(s)	218, 772
SbfI	CCTGCAGG	1 cut(s)	594
SchI	GAGTC	2 cut(s)	383, 784
ScrFI	CCNGG	2 cut(s)	249, 770
SdaI	CCTGCAGG	1 cut(s)	594
SfaNI	GCATC	2 cut(s)	343, 751
SfcI	CTRYAG	1 cut(s)	590
SinI	GGWCC	2 cut(s)	218, 772
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse8387I	CCTGCAGG	1 cut(s)	594
Sse9I	AATT	4 cut(s)	45, 186, 419, 479
SsiI	CCGC	5 cut(s)	317, 326, 485, 743, 956
SspMI	CTAG	3 cut(s)	488, 698, 777
StyD4I	CCNGG	2 cut(s)	247, 768
TaaI	ACNGT	3 cut(s)	307, 403, 537
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	1 cut(s)	312
TasI	AATT	4 cut(s)	45, 186, 419, 479
TatI	WGTACW	1 cut(s)	966
TauI	GCSGC	2 cut(s)	487, 746
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	4 cut(s)	107, 495, 624, 988
Tru9I	TTAA	4 cut(s)	107, 495, 624, 988
TseFI	GTSAC	1 cut(s)	525
TseI	GCWGC	2 cut(s)	136, 746
Tsp45I	GTSAC	1 cut(s)	525
TspDTI	ATGAA	7 cut(s)	33, 121, 169, 471, 546, 726, 936
TspGWI	ACGGA	4 cut(s)	27, 210, 411, 710
VpaK11BI	GGWCC	2 cut(s)	218, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XmnI	GAANNNNTTC	2 cut(s)	128, 537
XspI	CTAG	3 cut(s)	488, 698, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.