Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007072

Physical Location & Seq

Genomic Coordinates Reverse (-)

6515531 .. 6520138

Gene Structure 4608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG044600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGGGTGAACGGAGATGAAGGTGAGGACAAGCACACCAAGGAAATTGAACAAGTTGAAGAATCGGGTTCGGTTGTTCCAACCAAGCTCGTAGTTGGGTACGCCTTAACTCCAAAGAAGAAGAAGAGCTTCATGCAGCCTAAACTTGTTGGATTGGCTCGGAATAAAGGTATATCCTTCATTGCAATTGATCCAAATCGGACACTTTCAGATCAAGGTCCATTTGATGTTGTTTTGCATAAGGAATACAGGCAAAAACATCCAGAAGTAACTGTCCTCGATCCGCCAAATGCAGTACAACATCTTCACAATCGCCAGTCCATGCTTCAAGATGTGGCAGATCTAAACTTGTCCGACTCTCATGGAACGGTTTGTGTTCCAAAACAATTGACTATCACAAAAGATCCATCATCTATTCCTAATGAAGTAGCTAAAGCTGGGTTAAAATTGCCGCTAGTTGTTAAACCACTATTGGTGGATGGTAGCGCCAAGTCACATGAACTGTTTCTTGCTTATGACCAATGCTCCCTCTCAGAACTTGAACCTCCCCTGGTTCTGCAGGAGTTTGTAAATCATGGTGGTGTCCTCTTTAAAATATATATTGTCGGGGAAGCCATAAAGGTTGTAAGGCGTTTCTCTCTCCCTAATATCAGTAAACGTGAACTAGAAAAACTTGCTGGTGTTTTCCGTTTCCCAAGGGTTTCATGTGCGGCAGCTTCAGCAGATGATGCAGACCTGGACCCTAGTATTGCTGAACTACCTCAACGACCTTTGCTAGAGAGGCTTGCAAGGGAGCTCCGTCAACGATTGGGACTCCAGCTATTCAATGTAGATATGATCCGAGAGTACGGGACAAAGGATGTCTTTTATGTCATTGACATCAACTACTTTCCTGGGTACGGGAAAATGCCCGAGTATGAACACATCTTCACAGATTTTCTACTAAGCCTTCCGCAGATCATGTACAAGAAGAGACCTGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

328

Amino Acids

36.85

Weight (kDa)

7.13

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	31 - 99	5.1e-26	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	119 - 315	1.2e-91	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33770
fragaria_vesca	FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090
malus_domestica	MD00G1031200.v1.1
prunus_persica	Prupe.8G151200_v2.0.a1 Prupe.8G151200_v2.0.a1
pyrus_communis	pycom10g09690
rosa_chinensis	RchiOBHm_Chr6g0247961
rosa_laevigata	RLG00000015167
rosa_multiflora	Rmu_ssc0000139.1_g000003
rosa_roxburghii	Rroxscaffold_179G00449320 Rroxscaffold_7G00213550
rosa_rugosa	Rorug05G0529800 Rorug05G0529800
rosa_samantha	Rh6AG044600 Rh6BG039600 Rh6CG038200 Rh6DG035200
rosa_wichuraiana	Rw6G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	284, 452, 710, 953
AclWI	GGATC	4 cut(s)	185, 275, 398, 832
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	5 cut(s)	101, 297, 848, 899, 965
AfiI	CCNNNNNNNGG	1 cut(s)	899
AgsI	TTSAA	5 cut(s)	50, 59, 329, 542, 826
AjnI	CCWGG	3 cut(s)	549, 735, 892
AluBI	AGCT	7 cut(s)	88, 129, 431, 437, 716, 796, 820
AluI	AGCT	7 cut(s)	88, 129, 431, 437, 716, 796, 820
Alw21I	GWGCWC	1 cut(s)	798
Alw26I	GTCTC	1 cut(s)	967
AlwI	GGATC	4 cut(s)	185, 275, 398, 832
Ama87I	CYCGRG	1 cut(s)	911
ApeKI	GCWGC	2 cut(s)	136, 713
Asp700I	GAANNNNTTC	2 cut(s)	128, 504
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	2 cut(s)	218, 739
AsuHPI	GGTGA	2 cut(s)	19, 35
AvaI	CYCGRG	1 cut(s)	911
AvaII	GGWCC	2 cut(s)	218, 739
BanII	GRGCYC	1 cut(s)	798
BarI	GAAGNNNNNNTAC	2 cut(s)	288, 320
Bbv12I	GWGCWC	1 cut(s)	798
BbvI	GCAGC	2 cut(s)	148, 725
BccI	CCATC	2 cut(s)	415, 473
BciT130I	CCWGG	3 cut(s)	551, 737, 894
BcoDI	GTCTC	1 cut(s)	967
BfaI	CTAG	4 cut(s)	455, 665, 744, 776
BfmI	CTRYAG	1 cut(s)	557
BfoI	RGCGCY	1 cut(s)	489
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	4 cut(s)	137, 452, 711, 714
BlsI	GCNGC	4 cut(s)	138, 453, 712, 715
Bme1390I	CCNGG	3 cut(s)	551, 737, 894
Bme18I	GGWCC	2 cut(s)	218, 739
BmeT110I	CYCGRG	1 cut(s)	911
BmgT120I	GGNCC	2 cut(s)	218, 739
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	3 cut(s)	551, 737, 894
BmsI	GCATC	1 cut(s)	718
BpmI	CTGGAG	1 cut(s)	800
BsaBI	GATNNNNATC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	967
BsaJI	CCNNGG	4 cut(s)	39, 549, 695, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	899
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	3 cut(s)	551, 737, 894
BseDI	CCNNGG	4 cut(s)	39, 549, 695, 893
BseGI	GGATG	3 cut(s)	259, 484, 865
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	899
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	148, 725
BseYI	CCCAGC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	798
BsiHKCI	CYCGRG	1 cut(s)	911
BslFI	GGGAC	2 cut(s)	825, 865
BslI	CCNNNNNNNGG	1 cut(s)	899
BsmAI	GTCTC	1 cut(s)	967
BsmFI	GGGAC	2 cut(s)	825, 865
Bso31I	GGTCTC	1 cut(s)	967
BsoBI	CYCGRG	1 cut(s)	911
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp1407I	TGTACA	1 cut(s)	963
Bsp143I	GATC	7 cut(s)	190, 211, 280, 340, 403, 837, 957
BspACI	CCGC	4 cut(s)	284, 452, 710, 953
BspCNI	CTCAG	1 cut(s)	545
BspLI	GGNNCC	1 cut(s)	741
BspMAI	CTGCAG	1 cut(s)	561
BspPI	GGATC	4 cut(s)	185, 275, 398, 832
BspQI	GCTCTTC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	967
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	963
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	4 cut(s)	39, 549, 695, 893
BssMI	GATC	7 cut(s)	190, 211, 280, 340, 403, 837, 957
BssT1I	CCWWGG	2 cut(s)	39, 695
Bst2UI	CCWGG	3 cut(s)	551, 737, 894
Bst4CI	ACNGT	3 cut(s)	274, 370, 504
Bst6I	CTCTTC	2 cut(s)	119, 965
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	1 cut(s)	963
BstC8I	GCNNGC	1 cut(s)	786
BstDEI	CTNAG	2 cut(s)	532, 944
BstF5I	GGATG	3 cut(s)	259, 484, 865
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	7 cut(s)	193, 214, 283, 343, 406, 840, 960
BstMAI	GTCTC	1 cut(s)	967
BstMBI	GATC	7 cut(s)	190, 211, 280, 340, 403, 837, 957
BstMWI	GCNNNNNNNGC	3 cut(s)	719, 728, 781
BstNI	CCWGG	3 cut(s)	551, 737, 894
BstSCI	CCNGG	3 cut(s)	549, 735, 892
BstSFI	CTRYAG	1 cut(s)	557
BstV1I	GCAGC	2 cut(s)	148, 725
BstX2I	RGATCY	2 cut(s)	340, 403
BstYI	RGATCY	2 cut(s)	340, 403
BtsCI	GGATG	3 cut(s)	259, 484, 865
Cac8I	GCNNGC	1 cut(s)	786
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	2 cut(s)	218, 739
Csp6I	GTAC	5 cut(s)	100, 296, 847, 898, 964
CviAII	CATG	7 cut(s)	133, 322, 362, 497, 575, 705, 961
CviQI	GTAC	5 cut(s)	100, 296, 847, 898, 964
DdeI	CTNAG	2 cut(s)	532, 944
DpnI	GATC	7 cut(s)	192, 213, 282, 342, 405, 839, 959
DpnII	GATC	7 cut(s)	190, 211, 280, 340, 403, 837, 957
DraI	TTTAAA	1 cut(s)	592
Eam1104I	CTCTTC	2 cut(s)	119, 965
EarI	CTCTTC	2 cut(s)	119, 965
EciI	GGCGGA	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	796
Eco130I	CCWWGG	2 cut(s)	39, 695
Eco24I	GRGCYC	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	967
Eco47I	GGWCC	2 cut(s)	218, 739
Eco53kI	GAGCTC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	911
EcoICRI	GAGCTC	1 cut(s)	796
EcoRII	CCWGG	3 cut(s)	549, 735, 892
EcoT14I	CCWWGG	2 cut(s)	39, 695
EcoT38I	GRGCYC	1 cut(s)	798
ErhI	CCWWGG	2 cut(s)	39, 695
FaeI	CATG	7 cut(s)	136, 325, 365, 500, 578, 708, 964
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 848, 880
FaqI	GGGAC	2 cut(s)	825, 865
FatI	CATG	7 cut(s)	132, 321, 361, 496, 574, 704, 960
Fnu4HI	GCNGC	4 cut(s)	137, 452, 711, 714
FokI	GGATG	3 cut(s)	246, 491, 872
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	4 cut(s)	137, 452, 711, 714
FspBI	CTAG	4 cut(s)	455, 665, 744, 776
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	4 cut(s)	137, 452, 711, 714
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	800
HaeII	RGCGCY	1 cut(s)	489
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	7 cut(s)	136, 325, 365, 500, 578, 708, 964
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HincII	GTYRAC	1 cut(s)	803
HindII	GTYRAC	1 cut(s)	803
HinfI	GANTC	3 cut(s)	62, 356, 813
HphI	GGTGA	2 cut(s)	19, 35
Hpy166II	GTNNAC	4 cut(s)	10, 656, 662, 803
Hpy188I	TCNGA	6 cut(s)	162, 201, 211, 355, 535, 842
Hpy188III	TCNNGA	2 cut(s)	263, 329
Hpy8I	GTNNAC	4 cut(s)	10, 656, 662, 803
HpyAV	CCTTC	3 cut(s)	14, 187, 959
HpyCH4III	ACNGT	3 cut(s)	274, 370, 504
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	7 cut(s)	136, 185, 238, 293, 559, 731, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	719, 728, 781
HpyF3I	CTNAG	2 cut(s)	532, 944
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	7 cut(s)	136, 325, 365, 500, 578, 708, 964
HspAI	GCGC	1 cut(s)	486
Kzo9I	GATC	7 cut(s)	190, 211, 280, 340, 403, 837, 957
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	3 cut(s)	530, 793, 801
Lsp1109I	GCAGC	2 cut(s)	148, 725
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	4 cut(s)	455, 665, 744, 776
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	2 cut(s)	268, 492
MalI	GATC	7 cut(s)	192, 213, 282, 342, 405, 839, 959
MboI	GATC	7 cut(s)	190, 211, 280, 340, 403, 837, 957
MboII	GAAGA	7 cut(s)	71, 130, 133, 136, 296, 919, 982
MfeI	CAATTG	2 cut(s)	186, 386
MflI	RGATCY	2 cut(s)	340, 403
MhlI	GDGCHC	1 cut(s)	798
MluCI	AATT	4 cut(s)	45, 186, 386, 446
MlyI	GAGTC	2 cut(s)	350, 807
MmeI	TCCRAC	3 cut(s)	104, 130, 378
MnlI	CCTC	7 cut(s)	19, 287, 539, 555, 596, 771, 774
MroXI	GAANNNNTTC	2 cut(s)	128, 504
MseI	TTAA	5 cut(s)	107, 443, 462, 591, 985
MslI	CAYNNNNRTG	1 cut(s)	579
MspR9I	CCNGG	3 cut(s)	551, 737, 894
MunI	CAATTG	2 cut(s)	186, 386
MvaI	CCWGG	3 cut(s)	551, 737, 894
MwoI	GCNNNNNNNGC	3 cut(s)	719, 728, 781
NdeII	GATC	7 cut(s)	190, 211, 280, 340, 403, 837, 957
NlaIII	CATG	7 cut(s)	136, 325, 365, 500, 578, 708, 964
NlaIV	GGNNCC	1 cut(s)	741
NmuCI	GTSAC	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	119
PdmI	GAANNNNTTC	2 cut(s)	128, 504
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	4 cut(s)	138, 453, 712, 715
PleI	GAGTC	2 cut(s)	350, 807
PpsI	GAGTC	2 cut(s)	350, 807
Psp124BI	GAGCTC	1 cut(s)	798
Psp6I	CCWGG	3 cut(s)	549, 735, 892
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	3 cut(s)	549, 735, 892
PspN4I	GGNNCC	1 cut(s)	741
PspPI	GGNCC	2 cut(s)	218, 739
PstI	CTGCAG	1 cut(s)	561
PsuI	RGATCY	2 cut(s)	340, 403
RsaI	GTAC	5 cut(s)	101, 297, 848, 899, 965
RsaNI	GTAC	5 cut(s)	100, 296, 847, 898, 964
RseI	CAYNNNNRTG	1 cut(s)	579
SacI	GAGCTC	1 cut(s)	798
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	5 cut(s)	107, 443, 462, 591, 985
SatI	GCNGC	4 cut(s)	137, 452, 711, 714
Sau3AI	GATC	7 cut(s)	190, 211, 280, 340, 403, 837, 957
Sau96I	GGNCC	2 cut(s)	218, 739
SchI	GAGTC	2 cut(s)	350, 807
ScrFI	CCNGG	3 cut(s)	551, 737, 894
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	1 cut(s)	557
SinI	GGWCC	2 cut(s)	218, 739
SmiMI	CAYNNNNRTG	1 cut(s)	579
Sse9I	AATT	4 cut(s)	45, 186, 386, 446
SsiI	CCGC	4 cut(s)	284, 452, 710, 953
SspMI	CTAG	4 cut(s)	455, 665, 744, 776
SstI	GAGCTC	1 cut(s)	798
StyD4I	CCNGG	3 cut(s)	549, 735, 892
StyI	CCWWGG	2 cut(s)	39, 695
TaaI	ACNGT	3 cut(s)	274, 370, 504
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	1 cut(s)	279
TasI	AATT	4 cut(s)	45, 186, 386, 446
TatI	WGTACW	2 cut(s)	295, 963
TauI	GCSGC	2 cut(s)	454, 713
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	5 cut(s)	107, 443, 462, 591, 985
Tru9I	TTAA	5 cut(s)	107, 443, 462, 591, 985
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	2 cut(s)	136, 713
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	7 cut(s)	33, 121, 169, 438, 513, 693, 933
TspGWI	ACGGA	3 cut(s)	27, 677, 788
VpaK11BI	GGWCC	2 cut(s)	218, 739
XmnI	GAANNNNTTC	2 cut(s)	128, 504
XspI	CTAG	4 cut(s)	455, 665, 744, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.