FvH4_2g03522

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018369
Physical Location & Seq
Forward (+)
2831100 .. 2834497
3398 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03522.t1

Sequence Viewer

Length: 1410 bp
ATGGGTTCGGAAGCAAGCTCAGTATGCTTGCATGTCCTGCTTCTACTGCTACTATCCAGCTTTGCACTCTCTGTTCATTGGCCTGTAAAATCTCTGCCTGGCTACTCCGGTGATTTGCCCTTCAACTTTGAAACCGGGTACATTAGTGTGGATGATATCGAGTTCTTCTACTACTTTGTCGAGTCAGAAGGGAACCCTGCAGCTGACCCTGTTTTGCTTTACCTCAATGGAGGTCCTGGTTGTTCAGGTTTAAATGGATTCTTCTACCAAATAGGCCCGTTGAAGTTCAACATTTCAGATTACACCGGGGGCTTACCGACATTGATGTACGAACCAGAAACATGGACAAAGACGGCTAGTATAATATTTTTGGATGCACCTGTTGGTGCTGGTTTCTCGTACGCCAACACTACTGCGGCTTGGACCACAACAGATACAGGAGCAGCAAGCCAGTACAATGACTTTTTGAGAAGTTGGATAGATGAACACCCGAATTTCAGTACAAATCCGGTCTACATTGGTAGTGATTCATATGCTGGAATGAATCTTCCCATCCTTGCTCAAGATATAATCAACAGCAATGAAGCTGGAGTCGAGCCAATTATATACCTCAAAGGAATGGTACTTAGCTGCCCGCATACGAACACTGATATTGAAACAAATTCCAAAGTAGTTTTCGCCCATAGGATGGCTCTAATATCAGATGCAATGTACTTGTCAGCCAAAACCAGTTGCAATGGGGATTATGTGGATACAACCACTGCAGCATGCACAGAAAGTCTGAGTGCTATAACCCAGTGCATTGCTGAAATAAGTGTAACCAGTACTTTAGATCCTGATTGCACTTTCTTGTCCCCGAAAGAAGATGAAGAAAAAGCCTCCAGAAGATCTCTCAGGGAAAGCCCTATCAAGAGTCCACTAAGCCTACCATCATCAATTACAAAGAAACAAGATTTTTATTGCCATAATTTCCCTTATTTGCTTTCTGATGTATGGGGAAATTATGAAGGCGTCCAAGAGGCTCTTCATGTTCGACCGGGAACTGTTAAAATGTTTTTTAGGTGCAACGTTAGTCTCTCGTACACTGTAGACACCGATGATGCCGTCACTTATCACAAGAATCTGACCGACACAGGCCTACAATTACTGGTTTTCAGTGGTGACCATGACATGGTTATTCCACATAATAGTATTGAGTACTGGATAACCACACTAGACCTCACACTCGACACCGATTGGCGTCCTTGGTTCGTTGATGGTCAAGTCGCAGGGTACACAAGGAGGTATACAAACGATGGATATCGGTTGACATATGCAACTATTAAGGGAGCTGGTCACTCACCCCACGAGTACAAACGAAAGGAAGTTTTTGACATGTTCCATAGGTGGATCCATTATTATCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

470

Amino Acids

52.33

Weight (kDa)

4.79

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 33 - 465 5.2e-103 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03522
rosa_chinensis RchiOBHm_Chr6g0248941
rosa_laevigata RLG00000015107 RLG00000015108
rosa_multiflora Rmu_sc0003692.1_g000031
rosa_roxburghii Rroxscaffold_7G00212810
rosa_rugosa Rorug05G0534500 Rorug05G0534600
rosa_samantha Rh6AG051800
rosa_wichuraiana Rw6G004600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 688, 1171
AccI GTMKAC 3 cut(s) 513, 1089, 1286
AciI CCGC 2 cut(s) 416, 635
AclI AACGTT 1 cut(s) 1068
AclWI GGATC 3 cut(s) 827, 1384, 1397
AcsI RAATTY 2 cut(s) 493, 661
AcyI GRCGYC 2 cut(s) 1011, 1240
AfiI CCNNNNNNNGG 2 cut(s) 688, 1171
AflIII ACRYGT 1 cut(s) 1374
AgsI TTSAA 5 cut(s) 124, 131, 283, 289, 656
AjnI CCWGG 2 cut(s) 97, 235
AjuI GAANNNNNNNTTGG 4 cut(s) 659, 691, 1008, 1040
AluBI AGCT 6 cut(s) 18, 60, 203, 587, 630, 1331
AluI AGCT 6 cut(s) 18, 60, 203, 587, 630, 1331
Alw26I GTCTC 1 cut(s) 1079
AlwI GGATC 3 cut(s) 827, 1384, 1397
AoxI GGCC 3 cut(s) 80, 274, 1135
ApeKI GCWGC 4 cut(s) 200, 443, 630, 764
ApoI RAATTY 2 cut(s) 493, 661
AspS9I GGNCC 3 cut(s) 233, 275, 423
AsuC2I CCSGG 3 cut(s) 136, 307, 1038
AsuHPI GGTGA 3 cut(s) 122, 1172, 1332
AvaII GGWCC 2 cut(s) 233, 423
BaeI ACNNNNGTAYC 2 cut(s) 130, 163
BamHI GGATCC 1 cut(s) 1389
BauI CACGAG 1 cut(s) 1346
BbvI GCAGC 4 cut(s) 212, 455, 617, 776
BccI CCATC 5 cut(s) 560, 682, 937, 1250, 1289
BceAI ACGGC 2 cut(s) 369, 1088
BciT130I CCWGG 2 cut(s) 99, 237
BciVI GTATCC 1 cut(s) 745
BcnI CCSGG 3 cut(s) 136, 307, 1038
BcoDI GTCTC 1 cut(s) 1079
BfaI CTAG 2 cut(s) 357, 1214
BfmI CTRYAG 3 cut(s) 198, 762, 1086
BfuI GTATCC 1 cut(s) 745
BglII AGATCT 1 cut(s) 887
BisI GCNGC 5 cut(s) 201, 417, 444, 631, 765
BlsI GCNGC 5 cut(s) 202, 418, 445, 632, 766
BmcAI AGTACT 2 cut(s) 826, 1199
Bme1390I CCNGG 5 cut(s) 99, 136, 237, 307, 1038
Bme18I GGWCC 2 cut(s) 233, 423
BmgT120I GGNCC 3 cut(s) 233, 275, 423
BmiI GGNNCC 2 cut(s) 194, 1391
BmrFI CCNGG 5 cut(s) 99, 136, 237, 307, 1038
BmrI ACTGGG 1 cut(s) 790
BmsI GCATC 3 cut(s) 364, 694, 1090
BmuI ACTGGG 1 cut(s) 790
BpmI CTGGAG 2 cut(s) 609, 865
BpuEI CTTGAG 1 cut(s) 546
BpuMI CCSGG 3 cut(s) 136, 307, 1038
BsaBI GATNNNNATC 1 cut(s) 1299
BsaHI GRCGYC 2 cut(s) 1011, 1240
BsaJI CCNNGG 2 cut(s) 306, 1244
BsaWI WCCGGW 2 cut(s) 107, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 688, 1171
Bse1I ACTGG 6 cut(s) 451, 729, 796, 822, 1152, 1205
Bse3DI GCAATG 4 cut(s) 586, 714, 742, 801
Bse8I GATNNNNATC 1 cut(s) 1299
BseBI CCWGG 2 cut(s) 99, 237
BseDI CCNNGG 2 cut(s) 306, 1244
BseGI GGATG 4 cut(s) 157, 379, 552, 693
BseJI GATNNNNATC 1 cut(s) 1299
BseLI CCNNNNNNNGG 2 cut(s) 688, 1171
BseMI GCAATG 4 cut(s) 586, 714, 742, 801
BseMII CTCAG 3 cut(s) 33, 773, 907
BseNI ACTGG 6 cut(s) 451, 729, 796, 822, 1152, 1205
BseXI GCAGC 4 cut(s) 212, 455, 617, 776
Bsh1285I CGRYCG 1 cut(s) 1037
BshFI GGCC 3 cut(s) 82, 276, 1137
BsiEI CGRYCG 1 cut(s) 1037
BsiSI CCGG 5 cut(s) 108, 135, 306, 509, 1037
BsiWI CGTACG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 838
BslI CCNNNNNNNGG 2 cut(s) 688, 1171
BsmAI GTCTC 1 cut(s) 1079
BsmFI GGGAC 1 cut(s) 838
BsnI GGCC 3 cut(s) 82, 276, 1137
Bsp143I GATC 3 cut(s) 832, 887, 1389
BspACI CCGC 2 cut(s) 416, 635
BspANI GGCC 3 cut(s) 82, 276, 1137
BspCNI CTCAG 3 cut(s) 32, 774, 906
BspLI GGNNCC 2 cut(s) 194, 1391
BspMAI CTGCAG 2 cut(s) 202, 766
BspPI GGATC 3 cut(s) 827, 1384, 1397
BspQI GCTCTTC 1 cut(s) 1029
BsrDI GCAATG 4 cut(s) 586, 714, 742, 801
BsrI ACTGG 6 cut(s) 451, 729, 796, 822, 1152, 1205
BssECI CCNNGG 2 cut(s) 306, 1244
BssMI GATC 3 cut(s) 832, 887, 1389
BssNAI GTATAC 1 cut(s) 1287
BssNI GRCGYC 2 cut(s) 1011, 1240
BssSI CACGAG 1 cut(s) 1346
BssT1I CCWWGG 1 cut(s) 1244
Bst1107I GTATAC 1 cut(s) 1287
Bst2BI CACGAG 1 cut(s) 1346
Bst2UI CCWGG 2 cut(s) 99, 237
Bst4CI ACNGT 2 cut(s) 1045, 1087
Bst6I CTCTTC 1 cut(s) 1029
BstACI GRCGYC 2 cut(s) 1011, 1240
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 5 cut(s) 16, 29, 448, 635, 769
BstDEI CTNAG 5 cut(s) 19, 626, 782, 893, 920
BstEII GGTNACC 1 cut(s) 1160
BstF5I GGATG 4 cut(s) 157, 379, 552, 693
BstKTI GATC 3 cut(s) 835, 890, 1392
BstMAI GTCTC 1 cut(s) 1079
BstMBI GATC 3 cut(s) 832, 887, 1389
BstMCI CGRYCG 1 cut(s) 1037
BstMWI GCNNNNNNNGC 3 cut(s) 24, 37, 46
BstNI CCWGG 2 cut(s) 99, 237
BstNSI RCATGY 3 cut(s) 35, 771, 1378
BstPI GGTNACC 1 cut(s) 1160
BstSCI CCNGG 5 cut(s) 97, 134, 235, 305, 1036
BstSFI CTRYAG 3 cut(s) 198, 762, 1086
BstV1I GCAGC 4 cut(s) 212, 455, 617, 776
BstX2I RGATCY 3 cut(s) 832, 887, 1389
BstXI CCANNNNNNTGG 1 cut(s) 342
BstYI RGATCY 3 cut(s) 832, 887, 1389
BstZ17I GTATAC 1 cut(s) 1287
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 3 cut(s) 82, 276, 1137
BtsCI GGATG 4 cut(s) 157, 379, 552, 693
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 5 cut(s) 645, 759, 803, 1083, 1162
Cac8I GCNNGC 5 cut(s) 16, 29, 448, 635, 769
Cfr13I GGNCC 3 cut(s) 233, 275, 423
CseI GACGC 2 cut(s) 1000, 1229
CviAII CATG 7 cut(s) 32, 342, 768, 1028, 1166, 1171, 1375
DdeI CTNAG 5 cut(s) 19, 626, 782, 893, 920
DpnI GATC 3 cut(s) 834, 889, 1391
DpnII GATC 3 cut(s) 832, 887, 1389
DraI TTTAAA 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 1029
EarI CTCTTC 1 cut(s) 1029
Eco130I CCWWGG 1 cut(s) 1244
Eco147I AGGCCT 1 cut(s) 1137
Eco32I GATATC 2 cut(s) 157, 1301
Eco47I GGWCC 2 cut(s) 233, 423
Eco91I GGTNACC 1 cut(s) 1160
EcoO109I RGGNCCY 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 1160
EcoRII CCWGG 2 cut(s) 97, 235
EcoRV GATATC 2 cut(s) 157, 1301
EcoT14I CCWWGG 1 cut(s) 1244
ErhI CCWWGG 1 cut(s) 1244
FaeI CATG 7 cut(s) 35, 345, 771, 1031, 1169, 1174, 1378
FalI AAGNNNNNCTT 2 cut(s) 1008, 1040
FaqI GGGAC 1 cut(s) 838
FatI CATG 7 cut(s) 31, 341, 767, 1027, 1165, 1170, 1374
FauI CCCGC 1 cut(s) 642
FauNDI CATATG 2 cut(s) 532, 1312
FblI GTMKAC 3 cut(s) 513, 1089, 1286
Fnu4HI GCNGC 5 cut(s) 201, 417, 444, 631, 765
FokI GGATG 4 cut(s) 164, 386, 539, 700
Fsp4HI GCNGC 5 cut(s) 201, 417, 444, 631, 765
FspBI CTAG 2 cut(s) 357, 1214
GluI GCNGC 5 cut(s) 201, 417, 444, 631, 765
GsuI CTGGAG 2 cut(s) 609, 865
HaeIII GGCC 3 cut(s) 82, 276, 1137
HapII CCGG 5 cut(s) 108, 135, 306, 509, 1037
HgaI GACGC 2 cut(s) 1000, 1229
Hin1I GRCGYC 2 cut(s) 1011, 1240
Hin1II CATG 7 cut(s) 35, 345, 771, 1031, 1169, 1174, 1378
HincII GTYRAC 1 cut(s) 1308
HindII GTYRAC 1 cut(s) 1308
HinfI GANTC 7 cut(s) 182, 258, 527, 544, 591, 913, 1120
HpaII CCGG 5 cut(s) 108, 135, 306, 509, 1037
HphI GGTGA 3 cut(s) 122, 1172, 1332
Hpy166II GTNNAC 7 cut(s) 514, 917, 1083, 1090, 1275, 1287, 1308
Hpy188I TCNGA 7 cut(s) 10, 187, 298, 703, 783, 988, 1125
Hpy188III TCNNGA 4 cut(s) 563, 836, 882, 910
Hpy8I GTNNAC 7 cut(s) 514, 917, 1083, 1090, 1275, 1287, 1308
HpyAV CCTTC 3 cut(s) 130, 182, 1001
HpyCH4III ACNGT 2 cut(s) 1045, 1087
HpyCH4IV ACGT 1 cut(s) 1068
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 37, 46
HpyF3I CTNAG 5 cut(s) 19, 626, 782, 893, 920
HpySE526I ACGT 1 cut(s) 1068
Hsp92I GRCGYC 2 cut(s) 1011, 1240
Hsp92II CATG 7 cut(s) 35, 345, 771, 1031, 1169, 1174, 1378
Kzo9I GATC 3 cut(s) 832, 887, 1389
LguI GCTCTTC 1 cut(s) 1029
LmnI GCTCC 2 cut(s) 440, 1328
Lsp1109I GCAGC 4 cut(s) 212, 455, 617, 776
LweI GCATC 3 cut(s) 364, 694, 1090
MaeI CTAG 2 cut(s) 357, 1214
MaeII ACGT 1 cut(s) 1068
MaeIII GTNAC 4 cut(s) 817, 1105, 1160, 1334
MalI GATC 3 cut(s) 834, 889, 1391
MboI GATC 3 cut(s) 832, 887, 1389
MboII GAAGA 7 cut(s) 157, 253, 539, 875, 881, 897, 1016
MflI RGATCY 3 cut(s) 832, 887, 1389
MluCI AATT 7 cut(s) 493, 600, 661, 936, 967, 1000, 1142
MlyI GAGTC 3 cut(s) 191, 600, 922
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 7 cut(s) 224, 233, 620, 889, 1012, 1229, 1275
MseI TTAA 3 cut(s) 251, 1047, 1323
MslI CAYNNNNRTG 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 5 cut(s) 108, 135, 306, 509, 1037
MspR9I CCNGG 5 cut(s) 99, 136, 237, 307, 1038
MvaI CCWGG 2 cut(s) 99, 237
MwoI GCNNNNNNNGC 3 cut(s) 24, 37, 46
NciI CCSGG 3 cut(s) 136, 307, 1038
NdeI CATATG 2 cut(s) 532, 1312
NdeII GATC 3 cut(s) 832, 887, 1389
NlaIII CATG 7 cut(s) 35, 345, 771, 1031, 1169, 1174, 1378
NlaIV GGNNCC 2 cut(s) 194, 1391
NmuCI GTSAC 3 cut(s) 1105, 1160, 1334
NspI RCATGY 3 cut(s) 35, 771, 1378
PaeI GCATGC 1 cut(s) 771
PceI AGGCCT 1 cut(s) 1137
PciI ACATGT 1 cut(s) 1374
PciSI GCTCTTC 1 cut(s) 1029
PfeI GAWTC 4 cut(s) 258, 527, 544, 1120
Pfl23II CGTACG 1 cut(s) 399
PflMI CCANNNNNTGG 2 cut(s) 688, 1171
PkrI GCNGC 5 cut(s) 202, 418, 445, 632, 766
PleI GAGTC 3 cut(s) 190, 599, 921
PpsI GAGTC 3 cut(s) 190, 599, 921
PpuMI RGGWCCY 1 cut(s) 233
PscI ACATGT 1 cut(s) 1374
Psp1406I AACGTT 1 cut(s) 1068
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 97, 235
PspEI GGTNACC 1 cut(s) 1160
PspGI CCWGG 2 cut(s) 97, 235
PspLI CGTACG 1 cut(s) 399
PspN4I GGNNCC 2 cut(s) 194, 1391
PspPI GGNCC 3 cut(s) 233, 275, 423
PspPPI RGGWCCY 1 cut(s) 233
PstI CTGCAG 2 cut(s) 202, 766
PsuI RGATCY 3 cut(s) 832, 887, 1389
PvuII CAGCTG 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 1029
SaqAI TTAA 3 cut(s) 251, 1047, 1323
SatI GCNGC 5 cut(s) 201, 417, 444, 631, 765
Sau3AI GATC 3 cut(s) 832, 887, 1389
Sau96I GGNCC 3 cut(s) 233, 275, 423
ScaI AGTACT 2 cut(s) 826, 1199
SchI GAGTC 3 cut(s) 191, 600, 922
ScrFI CCNGG 5 cut(s) 99, 136, 237, 307, 1038
SfaNI GCATC 3 cut(s) 364, 694, 1090
SfcI CTRYAG 3 cut(s) 198, 762, 1086
SinI GGWCC 2 cut(s) 233, 423
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 561
SmoI CTYRAG 1 cut(s) 561
SphI GCATGC 1 cut(s) 771
Sse9I AATT 7 cut(s) 493, 600, 661, 936, 967, 1000, 1142
SseBI AGGCCT 1 cut(s) 1137
SsiI CCGC 2 cut(s) 416, 635
SspI AATATT 1 cut(s) 366
SspMI CTAG 2 cut(s) 357, 1214
StuI AGGCCT 1 cut(s) 1137
StyD4I CCNGG 5 cut(s) 97, 134, 235, 305, 1036
StyI CCWWGG 1 cut(s) 1244
TaaI ACNGT 2 cut(s) 1045, 1087
TaiI ACGT 1 cut(s) 1071
TaqI TCGA 5 cut(s) 159, 180, 594, 1033, 1227
TaqII GACCGA 1 cut(s) 1142
TasI AATT 7 cut(s) 493, 600, 661, 936, 967, 1000, 1142
TatI WGTACW 6 cut(s) 453, 500, 711, 824, 1197, 1350
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 4 cut(s) 258, 527, 544, 1120
Tru1I TTAA 3 cut(s) 251, 1047, 1323
Tru9I TTAA 3 cut(s) 251, 1047, 1323
TscAI CASTG 5 cut(s) 652, 766, 803, 1090, 1162
TseFI GTSAC 3 cut(s) 1105, 1160, 1334
TseI GCWGC 4 cut(s) 200, 443, 630, 764
Tsp45I GTSAC 3 cut(s) 1105, 1160, 1334
TspDTI ATGAA 8 cut(s) 65, 498, 519, 557, 597, 882, 1016, 1020
TspRI CASTG 5 cut(s) 652, 766, 803, 1090, 1162
Van91I CCANNNNNTGG 2 cut(s) 688, 1171
VpaK11BI GGWCC 2 cut(s) 233, 423
XapI RAATTY 2 cut(s) 493, 661
XceI RCATGY 3 cut(s) 35, 771, 1378
XmiI GTMKAC 3 cut(s) 513, 1089, 1286
XspI CTAG 2 cut(s) 357, 1214
ZrmI AGTACT 2 cut(s) 826, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.