RLG00000015107

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018369
Physical Location & Seq
Reverse (-)
61837771 .. 61840910
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015107

Sequence Viewer

Length: 1305 bp
ATGGGTTCCAAAGCAAGCTCACTATGCTTGCATTTCTTGCTTCTACTGCTTCTCTCTGGCACTGTGCTCTCGGTTCATTGGCCCGTAAAATCTCTGCCTGGCTACTCCGGTGATTTGCCCTTCAACCTTGAAACCGGCGTCTTATGCTTTTTATTTCTAGGCCCGTTGAAGTTCAACATTACAGATTACACCGGGGGCTTACCGACACTGATGGACGAACCAGAAACATGGACAAAGACGGCCAGTATAATATTTTTGGATGCACCTGTTGGTGCTGGTTTCTCATACGCCAACGACAGTGCAGCTTGGACCACAACAGATACACTGGCAGCAAGCCAGTACAATGACTTTTTGAGAAGTTGGATAGATGAACACCCGGATTTTAGTACAAATCCAGTCTACATTGGTAGTGATTCATATGCTGGAATGAATCTTCCCATCCTTGCTCAAGATATAATCAACAGCAATGAAGCTGGAGTCGAGCCAATTATATACCTCAAAGGAATGATACTTAGCTGTCCGCATACAAATACTGATATTGAAACAAATGCCAAAGTAATTTTTGCCCATAGGATGGCTCTAATATCAGATTCAATGTACGAGTCGGCCAAAAACAGTTGCAATGGGGATTATGTGGATACTACCACTGCAGCATGCACAGAAAGTCTCAGTGCTATAACCCAGTGCATTGCTGAAATTAGTGTAACCAGTACTTTGGATCCCGATTGCACTTTCTTGTCCCCGAAAGAAAAGGAAGAAAAGGAAGAAAAAGCCACCAGAAGATCTCTCAGACAAAACCCCATCAGGAGTTCACTAAGCTTACCGCCATCAATTACAAACCAACAAGAGTTTTATTGCCATAATTTCCCTTATTTGCTTTCTGATGTATGGGGAAATGATGAAGGCGTCCAAGAGGCTCTTCATGTTCGACCGGGTACTGTCAAAATATTTTTTAGGTGCAACGTTACTATCTCGTACACTGTAGACACGGATGATGCCGTCGCTTATCACAAGAATCTGACCGACACAGGCCTGCAATTACTGGTTTTCAGTGGTGACCATGACATGGTTATTCCACATAATGGTATTGAGTACTGGATAACCACATTAGACCTCACTCTCGACACCGATTGGCGTCCTTGGTTTGTTAATGGTCAAGTCGCGGGGTACACAAGGAGGTATACAAACGATGGATATCGCTTGACATATGCAACTGTTAAGGGAGCTGGTCACTCACCGCACGAGTACAAACGCAAGGAGGTTTTTGACATGTTCGATAGGTGGATCCATTATTATCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

435

Amino Acids

48.56

Weight (kDa)

4.87

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 53 - 430 6.7e-79 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03522
rosa_chinensis RchiOBHm_Chr6g0248941
rosa_laevigata RLG00000015107 RLG00000015108
rosa_multiflora Rmu_sc0003692.1_g000031
rosa_roxburghii Rroxscaffold_7G00212810
rosa_rugosa Rorug05G0534500 Rorug05G0534600
rosa_samantha Rh6AG051800
rosa_wichuraiana Rw6G004600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 574, 1066, 1082
AccI GTMKAC 3 cut(s) 399, 984, 1181
AccII CGCG 1 cut(s) 1163
AciI CCGC 4 cut(s) 521, 824, 1163, 1238
AclI AACGTT 1 cut(s) 963
AclWI GGATC 4 cut(s) 713, 726, 1279, 1292
AcoI YGGCCR 2 cut(s) 240, 606
AcyI GRCGYC 3 cut(s) 138, 906, 1135
AfaI GTAC 9 cut(s) 341, 388, 599, 712, 937, 977, 1094, 1169, 1247
AfiI CCNNNNNNNGG 3 cut(s) 574, 1066, 1082
AflIII ACRYGT 1 cut(s) 1269
AgsI TTSAA 6 cut(s) 124, 131, 169, 175, 542, 594
AjnI CCWGG 1 cut(s) 97
AjuI GAANNNNNNNTTGG 2 cut(s) 903, 935
AluBI AGCT 6 cut(s) 18, 305, 473, 516, 819, 1226
AluI AGCT 6 cut(s) 18, 305, 473, 516, 819, 1226
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 4 cut(s) 713, 726, 1279, 1292
AoxI GGCC 5 cut(s) 80, 160, 240, 606, 1030
ApeKI GCWGC 3 cut(s) 302, 329, 650
AspS9I GGNCC 3 cut(s) 81, 161, 309
AsuC2I CCSGG 3 cut(s) 193, 377, 933
AsuHPI GGTGA 3 cut(s) 122, 1067, 1227
AvaII GGWCC 1 cut(s) 309
BamHI GGATCC 2 cut(s) 718, 1284
BauI CACGAG 1 cut(s) 1241
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 314, 341, 662
BccI CCATC 6 cut(s) 205, 446, 568, 809, 835, 1184
BceAI ACGGC 2 cut(s) 255, 983
BciT130I CCWGG 1 cut(s) 99
BciVI GTATCC 1 cut(s) 631
BcnI CCSGG 3 cut(s) 193, 377, 933
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 2 cut(s) 648, 981
BfuI GTATCC 1 cut(s) 631
BglII AGATCT 1 cut(s) 782
BisI GCNGC 3 cut(s) 303, 330, 651
BlsI GCNGC 3 cut(s) 304, 331, 652
BmcAI AGTACT 2 cut(s) 712, 1094
Bme1390I CCNGG 4 cut(s) 99, 193, 377, 933
Bme18I GGWCC 1 cut(s) 309
BmgT120I GGNCC 3 cut(s) 81, 161, 309
BmiI GGNNCC 3 cut(s) 7, 720, 1286
BmrFI CCNGG 4 cut(s) 99, 193, 377, 933
BmrI ACTGGG 1 cut(s) 676
BmsI GCATC 2 cut(s) 250, 985
BmuI ACTGGG 1 cut(s) 676
BpmI CTGGAG 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 432
BpuMI CCSGG 3 cut(s) 193, 377, 933
BsaBI GATNNNNATC 1 cut(s) 1194
BsaHI GRCGYC 3 cut(s) 138, 906, 1135
BsaJI CCNNGG 2 cut(s) 192, 1139
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 3 cut(s) 574, 1066, 1082
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 8 cut(s) 243, 330, 337, 395, 682, 708, 1047, 1100
Bse3DI GCAATG 3 cut(s) 472, 628, 687
Bse8I GATNNNNATC 1 cut(s) 1194
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 192, 1139
BseGI GGATG 4 cut(s) 265, 438, 579, 997
BseJI GATNNNNATC 1 cut(s) 1194
BseLI CCNNNNNNNGG 3 cut(s) 574, 1066, 1082
BseMI GCAATG 3 cut(s) 472, 628, 687
BseMII CTCAG 2 cut(s) 682, 802
BseNI ACTGG 8 cut(s) 243, 330, 337, 395, 682, 708, 1047, 1100
BseXI GCAGC 3 cut(s) 314, 341, 662
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 1163
Bsh1285I CGRYCG 1 cut(s) 932
BshFI GGCC 5 cut(s) 82, 162, 242, 608, 1032
BsiEI CGRYCG 1 cut(s) 932
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 5 cut(s) 108, 135, 192, 377, 932
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 3 cut(s) 574, 1066, 1082
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 724
BsnI GGCC 5 cut(s) 82, 162, 242, 608, 1032
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 718, 782, 1284
BspACI CCGC 4 cut(s) 521, 824, 1163, 1238
BspANI GGCC 5 cut(s) 82, 162, 242, 608, 1032
BspCNI CTCAG 2 cut(s) 681, 801
BspFNI CGCG 1 cut(s) 1163
BspLI GGNNCC 3 cut(s) 7, 720, 1286
BspMAI CTGCAG 1 cut(s) 652
BspPI GGATC 4 cut(s) 713, 726, 1279, 1292
BspQI GCTCTTC 1 cut(s) 924
BsrDI GCAATG 3 cut(s) 472, 628, 687
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 8 cut(s) 243, 330, 337, 395, 682, 708, 1047, 1100
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 192, 1139
BssMI GATC 3 cut(s) 718, 782, 1284
BssNAI GTATAC 1 cut(s) 1182
BssNI GRCGYC 3 cut(s) 138, 906, 1135
BssSI CACGAG 1 cut(s) 1241
BssT1I CCWWGG 1 cut(s) 1139
Bst1107I GTATAC 1 cut(s) 1182
Bst2BI CACGAG 1 cut(s) 1241
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 6 cut(s) 64, 299, 617, 940, 982, 1216
Bst6I CTCTTC 1 cut(s) 924
BstACI GRCGYC 3 cut(s) 138, 906, 1135
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 5 cut(s) 16, 29, 334, 655, 1034
BstDEI CTNAG 4 cut(s) 512, 668, 788, 815
BstEII GGTNACC 1 cut(s) 1055
BstF5I GGATG 4 cut(s) 265, 438, 579, 997
BstFNI CGCG 1 cut(s) 1163
BstKTI GATC 3 cut(s) 721, 785, 1287
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 3 cut(s) 718, 782, 1284
BstMCI CGRYCG 1 cut(s) 932
BstMWI GCNNNNNNNGC 4 cut(s) 24, 37, 46, 144
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 2 cut(s) 657, 1273
BstPI GGTNACC 1 cut(s) 1055
BstSCI CCNGG 4 cut(s) 97, 191, 375, 931
BstSFI CTRYAG 2 cut(s) 648, 981
BstUI CGCG 1 cut(s) 1163
BstV1I GCAGC 3 cut(s) 314, 341, 662
BstX2I RGATCY 3 cut(s) 718, 782, 1284
BstXI CCANNNNNNTGG 2 cut(s) 228, 715
BstYI RGATCY 3 cut(s) 718, 782, 1284
BstZ17I GTATAC 1 cut(s) 1182
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 5 cut(s) 82, 162, 242, 608, 1032
BtsCI GGATG 4 cut(s) 265, 438, 579, 997
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 9 cut(s) 60, 206, 304, 323, 645, 676, 689, 978, 1057
Cac8I GCNNGC 5 cut(s) 16, 29, 334, 655, 1034
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 81, 161, 309
CseI GACGC 3 cut(s) 127, 895, 1124
Csp6I GTAC 9 cut(s) 340, 387, 598, 711, 936, 976, 1093, 1168, 1246
CviAII CATG 6 cut(s) 228, 654, 923, 1061, 1066, 1270
CviQI GTAC 9 cut(s) 340, 387, 598, 711, 936, 976, 1093, 1168, 1246
DdeI CTNAG 4 cut(s) 512, 668, 788, 815
DpnI GATC 3 cut(s) 720, 784, 1286
DpnII GATC 3 cut(s) 718, 782, 1284
EaeI YGGCCR 2 cut(s) 240, 606
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
Eco130I CCWWGG 1 cut(s) 1139
Eco147I AGGCCT 1 cut(s) 1032
Eco32I GATATC 1 cut(s) 1196
Eco47I GGWCC 1 cut(s) 309
Eco91I GGTNACC 1 cut(s) 1055
EcoO65I GGTNACC 1 cut(s) 1055
EcoRII CCWGG 1 cut(s) 97
EcoRV GATATC 1 cut(s) 1196
EcoT14I CCWWGG 1 cut(s) 1139
ErhI CCWWGG 1 cut(s) 1139
FaeI CATG 6 cut(s) 231, 657, 926, 1064, 1069, 1273
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 1 cut(s) 724
FatI CATG 6 cut(s) 227, 653, 922, 1060, 1065, 1269
FauI CCCGC 1 cut(s) 1156
FauNDI CATATG 2 cut(s) 418, 1207
FblI GTMKAC 3 cut(s) 399, 984, 1181
Fnu4HI GCNGC 3 cut(s) 303, 330, 651
FokI GGATG 4 cut(s) 272, 425, 586, 1004
Fsp4HI GCNGC 3 cut(s) 303, 330, 651
FspBI CTAG 1 cut(s) 158
GluI GCNGC 3 cut(s) 303, 330, 651
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 5 cut(s) 82, 162, 242, 608, 1032
HapII CCGG 5 cut(s) 108, 135, 192, 377, 932
HgaI GACGC 3 cut(s) 127, 895, 1124
Hin1I GRCGYC 3 cut(s) 138, 906, 1135
Hin1II CATG 6 cut(s) 231, 657, 926, 1064, 1069, 1273
HindIII AAGCTT 1 cut(s) 817
HinfI GANTC 6 cut(s) 413, 430, 477, 590, 602, 1015
HpaII CCGG 5 cut(s) 108, 135, 192, 377, 932
HphI GGTGA 3 cut(s) 122, 1067, 1227
Hpy166II GTNNAC 6 cut(s) 400, 812, 978, 985, 1170, 1182
Hpy188I TCNGA 4 cut(s) 589, 791, 883, 1020
Hpy188III TCNNGA 4 cut(s) 449, 722, 805, 1121
Hpy8I GTNNAC 6 cut(s) 400, 812, 978, 985, 1170, 1182
Hpy99I CGWCG 1 cut(s) 1004
HpyAV CCTTC 2 cut(s) 130, 896
HpyCH4III ACNGT 6 cut(s) 64, 299, 617, 940, 982, 1216
HpyCH4IV ACGT 1 cut(s) 963
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 37, 46, 144
HpyF3I CTNAG 4 cut(s) 512, 668, 788, 815
HpySE526I ACGT 1 cut(s) 963
Hsp92I GRCGYC 3 cut(s) 138, 906, 1135
Hsp92II CATG 6 cut(s) 231, 657, 926, 1064, 1069, 1273
Kzo9I GATC 3 cut(s) 718, 782, 1284
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 1 cut(s) 1223
Lsp1109I GCAGC 3 cut(s) 314, 341, 662
LweI GCATC 2 cut(s) 250, 985
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 963
MaeIII GTNAC 4 cut(s) 703, 964, 1055, 1229
MalI GATC 3 cut(s) 720, 784, 1286
MboI GATC 3 cut(s) 718, 782, 1284
MboII GAAGA 5 cut(s) 425, 767, 776, 792, 911
MflI RGATCY 3 cut(s) 718, 782, 1284
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 6 cut(s) 486, 558, 696, 831, 862, 1037
MlyI GAGTC 2 cut(s) 486, 611
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 5 cut(s) 506, 907, 1124, 1170, 1252
MseI TTAA 2 cut(s) 1149, 1218
MspI CCGG 5 cut(s) 108, 135, 192, 377, 932
MspR9I CCNGG 4 cut(s) 99, 193, 377, 933
MvaI CCWGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 1163
MwoI GCNNNNNNNGC 4 cut(s) 24, 37, 46, 144
NciI CCSGG 3 cut(s) 193, 377, 933
NdeI CATATG 2 cut(s) 418, 1207
NdeII GATC 3 cut(s) 718, 782, 1284
NlaIII CATG 6 cut(s) 231, 657, 926, 1064, 1069, 1273
NlaIV GGNNCC 3 cut(s) 7, 720, 1286
NmuCI GTSAC 2 cut(s) 1055, 1229
NspI RCATGY 2 cut(s) 657, 1273
PaeI GCATGC 1 cut(s) 657
PceI AGGCCT 1 cut(s) 1032
PciI ACATGT 1 cut(s) 1269
PciSI GCTCTTC 1 cut(s) 924
PfeI GAWTC 4 cut(s) 413, 430, 590, 1015
PflMI CCANNNNNTGG 3 cut(s) 574, 1066, 1082
PkrI GCNGC 3 cut(s) 304, 331, 652
PleI GAGTC 2 cut(s) 485, 610
PpsI GAGTC 2 cut(s) 485, 610
PscI ACATGT 1 cut(s) 1269
Psp1406I AACGTT 1 cut(s) 963
Psp6I CCWGG 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 1055
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 7, 720, 1286
PspPI GGNCC 3 cut(s) 81, 161, 309
PstI CTGCAG 1 cut(s) 652
PsuI RGATCY 3 cut(s) 718, 782, 1284
RsaI GTAC 9 cut(s) 341, 388, 599, 712, 937, 977, 1094, 1169, 1247
RsaNI GTAC 9 cut(s) 340, 387, 598, 711, 936, 976, 1093, 1168, 1246
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 2 cut(s) 1149, 1218
SatI GCNGC 3 cut(s) 303, 330, 651
Sau3AI GATC 3 cut(s) 718, 782, 1284
Sau96I GGNCC 3 cut(s) 81, 161, 309
ScaI AGTACT 2 cut(s) 712, 1094
SchI GAGTC 2 cut(s) 486, 611
ScrFI CCNGG 4 cut(s) 99, 193, 377, 933
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 250, 985
SfcI CTRYAG 2 cut(s) 648, 981
SinI GGWCC 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
SphI GCATGC 1 cut(s) 657
Sse9I AATT 6 cut(s) 486, 558, 696, 831, 862, 1037
SseBI AGGCCT 1 cut(s) 1032
SsiI CCGC 4 cut(s) 521, 824, 1163, 1238
SspI AATATT 2 cut(s) 252, 948
SspMI CTAG 1 cut(s) 158
StuI AGGCCT 1 cut(s) 1032
StyD4I CCNGG 4 cut(s) 97, 191, 375, 931
StyI CCWWGG 1 cut(s) 1139
TaaI ACNGT 6 cut(s) 64, 299, 617, 940, 982, 1216
TaiI ACGT 1 cut(s) 966
TaqI TCGA 4 cut(s) 480, 928, 1122, 1275
TaqII GACCGA 1 cut(s) 1037
TasI AATT 6 cut(s) 486, 558, 696, 831, 862, 1037
TatI WGTACW 5 cut(s) 339, 386, 710, 1092, 1245
TfiI GAWTC 4 cut(s) 413, 430, 590, 1015
Tru1I TTAA 2 cut(s) 1149, 1218
Tru9I TTAA 2 cut(s) 1149, 1218
TscAI CASTG 9 cut(s) 67, 213, 304, 330, 652, 676, 689, 985, 1057
TseFI GTSAC 2 cut(s) 1055, 1229
TseI GCWGC 3 cut(s) 302, 329, 650
Tsp45I GTSAC 2 cut(s) 1055, 1229
TspDTI ATGAA 7 cut(s) 65, 384, 405, 443, 483, 911, 915
TspGWI ACGGA 1 cut(s) 1004
TspRI CASTG 9 cut(s) 67, 213, 304, 330, 652, 676, 689, 985, 1057
Van91I CCANNNNNTGG 3 cut(s) 574, 1066, 1082
VpaK11BI GGWCC 1 cut(s) 309
XceI RCATGY 2 cut(s) 657, 1273
XmiI GTMKAC 3 cut(s) 399, 984, 1181
XspI CTAG 1 cut(s) 158
ZrmI AGTACT 2 cut(s) 712, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.