RLG00000015108

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018369
Physical Location & Seq
Reverse (-)
61861554 .. 61872251
10698 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015108

Sequence Viewer

Length: 1248 bp
ATGGATTCCAAAGCAAGCTCACTATGCATGCATTTCTTGCTTATACAGCTTCTCTCCGGCACTGTACTCTCAGTTCATTGGCCCGTAAAATCTCTGCCCGGCTACTCCGGTGATTTGCCCTTCAACCTTGAAACCGGGCCCGTTGAAGTTCAACATTTCAGATTACACCGGGGGCTTACCAACATTAATACTGCCAGTATAATATTTTTGGATGCACCTGTTGGTACTGGTTTCTCATACACCAACGACAGCAGAGCTTGGACCACAACAGATACACAAGCAGCAAGCCAGTACAATGACTTTTTGAGAAGCTGGATAGATGAACACTCGGATTTTGATACAAACCCAGTCTACATTGGTAGTGATTCATATGCTGGAATAAATCTTCCCATCCTTGCTCAAGATATAATCAACAGCAATGAAGCTGGAGTCGAGCCAACTATATATCTCAAAGGAATGGTACTTAGCTGTCCGCATACAAGTACTAATATTGAAGCCAATTCCAAAGTACCTTTTGCCCATAGGATGGCTCTAATATCAGATTCAATGTACGAGTCCGCCAAAAACAGTTGCAATGGGGATTATGCGGATACAACCACTGCAGCATGCATAGAAAGCCTCAGTGCTATAACCCAGTGCATTGCTGAAATAAGTGGAACCAGTCCTTTGGATCCCGATTGCACTTTCTTGTCCCCGAAAGAAAAGGAAGAAAAAGCGGCCAGAAGATCTCTCAGACAGAACCCCATCTGGAGTTCACTGAGCCTACCATCATCAATTACAAACAAACAAGATTTTTACTGCCATAATTTCCCTTATTTGCTTTCGGATGTATGGGGAAATTATGAAGGAGTCCAAGAGGCTCTTCATATTCGACCGGGAACTGTTAAAATATTTTTTAGGTGCAACATTAGTCTCTCATACACTTATGACATCTATGATGCTGTCGCTTATCACAAGAATCTGACCGAAACAGGCCTGCAATTACTGGTTTTCAGTGGTGACCATGACATGAATATTCCACATAATGGTATTGAATACTGGATAACCACACTAGACCTCACACTCGACACGGATTGGCGTCCTTGGTTCGTTGATGGTCAAGTCGCAGGGTACACAAGGAGGTATACAAACGATGGATATCGCTTGACATATGCAACTATTAAGGGAGCTGGTCACTCACCGCACGAGTACAAACGCAAGGAAGTTTTTGACATGTTCCATAGGTGGATCCATTATTATCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

416

Amino Acids

46.77

Weight (kDa)

5.37

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 42 - 411 1.2e-73 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03522
rosa_chinensis RchiOBHm_Chr6g0248941
rosa_laevigata RLG00000015107 RLG00000015108
rosa_multiflora Rmu_sc0003692.1_g000031
rosa_roxburghii Rroxscaffold_7G00212810
rosa_rugosa Rorug05G0534500 Rorug05G0534600
rosa_samantha Rh6AG051800
rosa_wichuraiana Rw6G004600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 526, 1025
AccI GTMKAC 2 cut(s) 351, 1124
AciI CCGC 5 cut(s) 473, 558, 587, 716, 1181
AclWI GGATC 4 cut(s) 665, 678, 1222, 1235
AcoI YGGCCR 1 cut(s) 717
AcyI GRCGYC 1 cut(s) 1078
AfaI GTAC 9 cut(s) 66, 226, 293, 462, 484, 510, 551, 1112, 1190
AfiI CCNNNNNNNGG 2 cut(s) 526, 1025
AflIII ACRYGT 1 cut(s) 1212
AgsI TTSAA 7 cut(s) 124, 131, 146, 152, 494, 546, 1034
AjuI GAANNNNNNNTTGG 2 cut(s) 846, 878
AluBI AGCT 7 cut(s) 18, 49, 257, 312, 425, 468, 1169
AluI AGCT 7 cut(s) 18, 49, 257, 312, 425, 468, 1169
Alw26I GTCTC 1 cut(s) 917
AlwI GGATC 4 cut(s) 665, 678, 1222, 1235
AoxI GGCC 4 cut(s) 80, 137, 717, 973
ApaI GGGCCC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 281, 602
AseI ATTAAT 1 cut(s) 186
AspS9I GGNCC 4 cut(s) 81, 137, 138, 261
AsuC2I CCSGG 4 cut(s) 99, 136, 170, 876
AsuHPI GGTGA 3 cut(s) 122, 1010, 1170
AvaII GGWCC 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 141
BamHI GGATCC 2 cut(s) 670, 1227
BanII GRGCYC 1 cut(s) 141
BauI CACGAG 1 cut(s) 1184
BbvI GCAGC 2 cut(s) 293, 614
BccI CCATC 6 cut(s) 398, 520, 752, 775, 1088, 1127
BciVI GTATCC 1 cut(s) 583
BcnI CCSGG 4 cut(s) 99, 136, 170, 876
BcoDI GTCTC 1 cut(s) 917
BfaI CTAG 1 cut(s) 1052
BfmI CTRYAG 1 cut(s) 600
BfuI GTATCC 1 cut(s) 583
BglII AGATCT 1 cut(s) 725
BisI GCNGC 3 cut(s) 282, 603, 717
BlsI GCNGC 3 cut(s) 283, 604, 718
BmcAI AGTACT 1 cut(s) 484
Bme1390I CCNGG 4 cut(s) 99, 136, 170, 876
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 4 cut(s) 81, 137, 138, 261
BmiI GGNNCC 4 cut(s) 139, 658, 672, 1229
BmrFI CCNGG 4 cut(s) 99, 136, 170, 876
BmrI ACTGGG 2 cut(s) 341, 628
BmsI GCATC 2 cut(s) 202, 928
BmuI ACTGGG 2 cut(s) 341, 628
BpmI CTGGAG 2 cut(s) 447, 769
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 4 cut(s) 99, 136, 170, 876
BsaBI GATNNNNATC 1 cut(s) 1137
BsaHI GRCGYC 1 cut(s) 1078
BsaJI CCNNGG 2 cut(s) 169, 1082
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 1025
Bse1I ACTGG 8 cut(s) 195, 232, 289, 347, 634, 660, 990, 1043
Bse3DI GCAATG 3 cut(s) 424, 580, 639
Bse8I GATNNNNATC 1 cut(s) 1137
BseDI CCNNGG 2 cut(s) 169, 1082
BseGI GGATG 4 cut(s) 217, 390, 531, 832
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 2 cut(s) 526, 1025
BseMI GCAATG 3 cut(s) 424, 580, 639
BseMII CTCAG 4 cut(s) 84, 634, 745, 749
BseNI ACTGG 8 cut(s) 195, 232, 289, 347, 634, 660, 990, 1043
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 2 cut(s) 293, 614
Bsh1285I CGRYCG 1 cut(s) 875
BshFI GGCC 4 cut(s) 82, 139, 719, 975
BsiEI CGRYCG 1 cut(s) 875
BsiSI CCGG 6 cut(s) 57, 99, 108, 135, 169, 875
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 2 cut(s) 526, 1025
BsmAI GTCTC 1 cut(s) 917
BsmFI GGGAC 1 cut(s) 676
BsnI GGCC 4 cut(s) 82, 139, 719, 975
Bsp120I GGGCCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 670, 725, 1227
BspACI CCGC 5 cut(s) 473, 558, 587, 716, 1181
BspANI GGCC 4 cut(s) 82, 139, 719, 975
BspCNI CTCAG 4 cut(s) 83, 633, 744, 750
BspLI GGNNCC 4 cut(s) 139, 658, 672, 1229
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 4 cut(s) 665, 678, 1222, 1235
BspQI GCTCTTC 1 cut(s) 867
BsrDI GCAATG 3 cut(s) 424, 580, 639
BsrI ACTGG 8 cut(s) 195, 232, 289, 347, 634, 660, 990, 1043
BssECI CCNNGG 2 cut(s) 169, 1082
BssMI GATC 3 cut(s) 670, 725, 1227
BssNAI GTATAC 1 cut(s) 1125
BssNI GRCGYC 1 cut(s) 1078
BssSI CACGAG 1 cut(s) 1184
BssT1I CCWWGG 1 cut(s) 1082
Bst1107I GTATAC 1 cut(s) 1125
Bst2BI CACGAG 1 cut(s) 1184
Bst4CI ACNGT 3 cut(s) 64, 569, 883
Bst6I CTCTTC 1 cut(s) 867
BstACI GRCGYC 1 cut(s) 1078
BstAPI GCANNNNNTGC 1 cut(s) 37
BstC8I GCNNGC 5 cut(s) 16, 29, 286, 607, 977
BstDEI CTNAG 5 cut(s) 70, 464, 620, 731, 758
BstEII GGTNACC 1 cut(s) 998
BstF5I GGATG 4 cut(s) 217, 390, 531, 832
BstKTI GATC 3 cut(s) 673, 728, 1230
BstMAI GTCTC 1 cut(s) 917
BstMBI GATC 3 cut(s) 670, 725, 1227
BstMCI CGRYCG 1 cut(s) 875
BstMWI GCNNNNNNNGC 4 cut(s) 24, 37, 46, 615
BstNSI RCATGY 3 cut(s) 31, 609, 1216
BstPI GGTNACC 1 cut(s) 998
BstSCI CCNGG 4 cut(s) 97, 134, 168, 874
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 293, 614
BstX2I RGATCY 3 cut(s) 670, 725, 1227
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 3 cut(s) 670, 725, 1227
BstZ17I GTATAC 1 cut(s) 1125
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 4 cut(s) 82, 139, 719, 975
BtsCI GGATG 4 cut(s) 217, 390, 531, 832
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 6 cut(s) 60, 597, 628, 641, 755, 1000
Cac8I GCNNGC 5 cut(s) 16, 29, 286, 607, 977
Cfr13I GGNCC 4 cut(s) 81, 137, 138, 261
CseI GACGC 1 cut(s) 1067
Csp6I GTAC 9 cut(s) 65, 225, 292, 461, 483, 509, 550, 1111, 1189
CviAII CATG 5 cut(s) 28, 606, 1004, 1009, 1213
CviQI GTAC 9 cut(s) 65, 225, 292, 461, 483, 509, 550, 1111, 1189
DdeI CTNAG 5 cut(s) 70, 464, 620, 731, 758
DpnI GATC 3 cut(s) 672, 727, 1229
DpnII GATC 3 cut(s) 670, 725, 1227
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 1 cut(s) 867
EarI CTCTTC 1 cut(s) 867
EciI GGCGGA 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 1082
Eco147I AGGCCT 1 cut(s) 975
Eco24I GRGCYC 1 cut(s) 141
Eco32I GATATC 1 cut(s) 1139
Eco47I GGWCC 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 998
EcoO65I GGTNACC 1 cut(s) 998
EcoRV GATATC 1 cut(s) 1139
EcoT14I CCWWGG 1 cut(s) 1082
EcoT22I ATGCAT 3 cut(s) 29, 33, 611
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 1082
FaeI CATG 5 cut(s) 31, 609, 1007, 1012, 1216
FalI AAGNNNNNCTT 2 cut(s) 846, 878
FaqI GGGAC 1 cut(s) 676
FatI CATG 5 cut(s) 27, 605, 1003, 1008, 1212
FauNDI CATATG 2 cut(s) 370, 1150
FblI GTMKAC 2 cut(s) 351, 1124
Fnu4HI GCNGC 3 cut(s) 282, 603, 717
FokI GGATG 4 cut(s) 224, 377, 538, 839
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 282, 603, 717
FspBI CTAG 1 cut(s) 1052
GluI GCNGC 3 cut(s) 282, 603, 717
GsuI CTGGAG 2 cut(s) 447, 769
HaeIII GGCC 4 cut(s) 82, 139, 719, 975
HapII CCGG 6 cut(s) 57, 99, 108, 135, 169, 875
HgaI GACGC 1 cut(s) 1067
Hin1I GRCGYC 1 cut(s) 1078
Hin1II CATG 5 cut(s) 31, 609, 1007, 1012, 1216
HinfI GANTC 7 cut(s) 5, 365, 429, 542, 554, 849, 958
HpaII CCGG 6 cut(s) 57, 99, 108, 135, 169, 875
HphI GGTGA 3 cut(s) 122, 1010, 1170
Hpy166II GTNNAC 4 cut(s) 352, 755, 1113, 1125
Hpy188I TCNGA 6 cut(s) 161, 331, 541, 734, 826, 963
Hpy188III TCNNGA 3 cut(s) 401, 674, 748
Hpy8I GTNNAC 4 cut(s) 352, 755, 1113, 1125
HpyAV CCTTC 2 cut(s) 130, 839
HpyCH4III ACNGT 3 cut(s) 64, 569, 883
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 37, 46, 615
HpyF3I CTNAG 5 cut(s) 70, 464, 620, 731, 758
Hsp92I GRCGYC 1 cut(s) 1078
Hsp92II CATG 5 cut(s) 31, 609, 1007, 1012, 1216
Kzo9I GATC 3 cut(s) 670, 725, 1227
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 1 cut(s) 1166
Lsp1109I GCAGC 2 cut(s) 293, 614
LweI GCATC 2 cut(s) 202, 928
MaeI CTAG 1 cut(s) 1052
MaeIII GTNAC 2 cut(s) 998, 1172
MalI GATC 3 cut(s) 672, 727, 1229
MboI GATC 3 cut(s) 670, 725, 1227
MboII GAAGA 4 cut(s) 377, 719, 735, 854
MflI RGATCY 3 cut(s) 670, 725, 1227
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 5 cut(s) 499, 774, 805, 838, 980
MlyI GAGTC 3 cut(s) 438, 563, 858
MnlI CCTC 4 cut(s) 629, 850, 1067, 1113
Mph1103I ATGCAT 3 cut(s) 29, 33, 611
MseI TTAA 3 cut(s) 186, 885, 1161
MspI CCGG 6 cut(s) 57, 99, 108, 135, 169, 875
MspR9I CCNGG 4 cut(s) 99, 136, 170, 876
MwoI GCNNNNNNNGC 4 cut(s) 24, 37, 46, 615
NciI CCSGG 4 cut(s) 99, 136, 170, 876
NdeI CATATG 2 cut(s) 370, 1150
NdeII GATC 3 cut(s) 670, 725, 1227
NlaIII CATG 5 cut(s) 31, 609, 1007, 1012, 1216
NlaIV GGNNCC 4 cut(s) 139, 658, 672, 1229
NmuCI GTSAC 2 cut(s) 998, 1172
NsiI ATGCAT 3 cut(s) 29, 33, 611
NspI RCATGY 3 cut(s) 31, 609, 1216
PaeI GCATGC 2 cut(s) 31, 609
PceI AGGCCT 1 cut(s) 975
PciI ACATGT 1 cut(s) 1212
PciSI GCTCTTC 1 cut(s) 867
PfeI GAWTC 4 cut(s) 5, 365, 542, 958
PflMI CCANNNNNTGG 2 cut(s) 526, 1025
PkrI GCNGC 3 cut(s) 283, 604, 718
PleI GAGTC 3 cut(s) 437, 562, 857
PpsI GAGTC 3 cut(s) 437, 562, 857
PscI ACATGT 1 cut(s) 1212
PshBI ATTAAT 1 cut(s) 186
PspEI GGTNACC 1 cut(s) 998
PspN4I GGNNCC 4 cut(s) 139, 658, 672, 1229
PspOMI GGGCCC 1 cut(s) 137
PspPI GGNCC 4 cut(s) 81, 137, 138, 261
PsrI GAACNNNNNNTAC 2 cut(s) 57, 89
PstI CTGCAG 1 cut(s) 604
PsuI RGATCY 3 cut(s) 670, 725, 1227
RsaI GTAC 9 cut(s) 66, 226, 293, 462, 484, 510, 551, 1112, 1190
RsaNI GTAC 9 cut(s) 65, 225, 292, 461, 483, 509, 550, 1111, 1189
SapI GCTCTTC 1 cut(s) 867
SaqAI TTAA 3 cut(s) 186, 885, 1161
SatI GCNGC 3 cut(s) 282, 603, 717
Sau3AI GATC 3 cut(s) 670, 725, 1227
Sau96I GGNCC 4 cut(s) 81, 137, 138, 261
ScaI AGTACT 1 cut(s) 484
SchI GAGTC 3 cut(s) 438, 563, 858
ScrFI CCNGG 4 cut(s) 99, 136, 170, 876
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 2 cut(s) 202, 928
SfcI CTRYAG 1 cut(s) 600
SinI GGWCC 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SphI GCATGC 2 cut(s) 31, 609
Sse9I AATT 5 cut(s) 499, 774, 805, 838, 980
SseBI AGGCCT 1 cut(s) 975
SsiI CCGC 5 cut(s) 473, 558, 587, 716, 1181
SspI AATATT 4 cut(s) 204, 490, 891, 1015
SspMI CTAG 1 cut(s) 1052
StuI AGGCCT 1 cut(s) 975
StyD4I CCNGG 4 cut(s) 97, 134, 168, 874
StyI CCWWGG 1 cut(s) 1082
TaaI ACNGT 3 cut(s) 64, 569, 883
TaqI TCGA 3 cut(s) 432, 871, 1065
TaqII GACCGA 1 cut(s) 980
TasI AATT 5 cut(s) 499, 774, 805, 838, 980
TatI WGTACW 4 cut(s) 64, 291, 482, 1188
TauI GCSGC 1 cut(s) 719
TfiI GAWTC 4 cut(s) 5, 365, 542, 958
Tru1I TTAA 3 cut(s) 186, 885, 1161
Tru9I TTAA 3 cut(s) 186, 885, 1161
TscAI CASTG 6 cut(s) 67, 604, 628, 641, 762, 1000
TseFI GTSAC 2 cut(s) 998, 1172
TseI GCWGC 2 cut(s) 281, 602
Tsp45I GTSAC 2 cut(s) 998, 1172
TspDTI ATGAA 7 cut(s) 65, 336, 357, 435, 854, 858, 1025
TspGWI ACGGA 1 cut(s) 1085
TspRI CASTG 6 cut(s) 67, 604, 628, 641, 762, 1000
Van91I CCANNNNNTGG 2 cut(s) 526, 1025
VpaK11BI GGWCC 1 cut(s) 261
VspI ATTAAT 1 cut(s) 186
XceI RCATGY 3 cut(s) 31, 609, 1216
XmiI GTMKAC 2 cut(s) 351, 1124
XspI CTAG 1 cut(s) 1052
ZrmI AGTACT 1 cut(s) 484
Zsp2I ATGCAT 3 cut(s) 29, 33, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.