Rorug05G0534500

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018369
Physical Location & Seq
Reverse (-)
72238680 .. 72241588
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0534500.1

Sequence Viewer

Length: 891 bp
ATGGTAGCCGCTTACGAAGAAGCTCGTAACAAACGCCTTGAAGAAAACAAGAAGAAGTTTCAGGATTTGGGAATCACCCAGGTTTCAAAAACTCTGTCTGACCTCACAGCTTCTGAGAAGAAGCCCCCCCAGCAAAGGGCTTGGAAGCTGAAAGCAAAGAACACTGCTTTCGAAGTGGAGCCAAGACGATCCACCCGTCAGCGAAACCCAATTCAAACATATGTTGATGATGTTGACATACGCCTTCGAACTAGGAAGAGGGTGAGGTCAAGTTCATCTTCATTTGGAAGCTACCTTGCAAGGCCTTTGGAGGAGTGCCGAATGGCTTCTTATGAAGAAAGGAGTGCTGCTTTCAAAGCTGCAGAGCGGCTTCAAGAGAGTCTGCAATCTGAAAATCCATCTTTTGTCAAATCGATGCTCCGGTCTCATGTCTATAGCTGTTTTTGGTTGGGTCTTCCTTCTAATTTCTGTGAGACTCATCTCCCAAAATCATCGGACTCTGAACTGATACTAGAGGATGAAGATGGAAATGAATATGATGCTAAATACATTGCCAAGAGGACTGGTCTTAGTGGTGGTTGGAGAGGTTTTGCATTGGAACACAAGTTGGACGATGGTGATGCACTTGTGTTTGAATTGGTTGAACCCACAAGGTTTAAGATCTACATAGTTAAGGTGACAACTCAAGAACATTGCAAGAAGGACAAAGTGAAGAGTGCTGGAAAGCCATCAAAGGCAGCCAAGAAGCCTGACCAAGACTCTAACAAAAAACAAAGGTCAAAGAAAGCTACCACTGCTGAAATAATCGACATGAAAACACCCCCAGAGCTTCTACCGGAGAGCCCAAAAAGTGAAGCTGTACTACCATATAGACTAAGGAAGAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

296

Amino Acids

33.87

Weight (kDa)

9.53

Isoelectric Point (pI)

58.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 135 - 223 5.7e-19 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03522
rosa_chinensis RchiOBHm_Chr6g0248941
rosa_laevigata RLG00000015107 RLG00000015108
rosa_multiflora Rmu_sc0003692.1_g000031
rosa_roxburghii Rroxscaffold_7G00212810
rosa_rugosa Rorug05G0534500 Rorug05G0534600
rosa_samantha Rh6AG051800
rosa_wichuraiana Rw6G004600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 367
AciI CCGC 2 cut(s) 9, 367
AclWI GGATC 1 cut(s) 183
AfaI GTAC 1 cut(s) 861
AfiI CCNNNNNNNGG 2 cut(s) 135, 136
AgsI TTSAA 7 cut(s) 41, 87, 215, 355, 374, 635, 644
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 9 cut(s) 23, 110, 148, 291, 359, 438, 788, 829, 857
AluI AGCT 9 cut(s) 23, 110, 148, 291, 359, 438, 788, 829, 857
Alw26I GTCTC 2 cut(s) 429, 467
AlwI GGATC 1 cut(s) 183
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 3 cut(s) 347, 359, 737
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
Asp700I GAANNNNTTC 1 cut(s) 325
AsuHPI GGTGA 4 cut(s) 67, 274, 629, 688
AsuII TTCGAA 2 cut(s) 171, 247
BanII GRGCYC 1 cut(s) 845
BarI GAAGNNNNNNTAC 2 cut(s) 846, 878
BbsI GAAGAC 1 cut(s) 446
BbvI GCAGC 3 cut(s) 334, 346, 749
BccI CCATC 4 cut(s) 406, 518, 608, 736
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 429, 467
BfaI CTAG 2 cut(s) 252, 512
BfmI CTRYAG 2 cut(s) 360, 433
BglII AGATCT 1 cut(s) 660
BisI GCNGC 5 cut(s) 9, 348, 360, 368, 738
BlsI GCNGC 5 cut(s) 10, 349, 361, 369, 739
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 3 cut(s) 405, 529, 610
BpiI GAAGAC 1 cut(s) 446
Bpu14I TTCGAA 2 cut(s) 171, 247
BpuEI CTTGAG 1 cut(s) 669
Bsa29I ATCGAT 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 78
BsaWI WCCGGW 2 cut(s) 420, 835
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 136
Bse1I ACTGG 1 cut(s) 568
Bse3DI GCAATG 2 cut(s) 549, 691
BseBI CCWGG 1 cut(s) 80
BseCI ATCGAT 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 2 cut(s) 135, 136
BseMI GCAATG 2 cut(s) 549, 691
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 568
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 334, 346, 749
BseYI CCCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 304
BshVI ATCGAT 1 cut(s) 413
BsiSI CCGG 2 cut(s) 421, 836
BslI CCNNNNNNNGG 2 cut(s) 135, 136
BsmAI GTCTC 2 cut(s) 429, 467
BsnI GGCC 1 cut(s) 304
Bso31I GGTCTC 1 cut(s) 429
Bsp119I TTCGAA 2 cut(s) 171, 247
Bsp1286I GDGCHC 1 cut(s) 845
Bsp143I GATC 2 cut(s) 188, 660
BspACI CCGC 2 cut(s) 9, 367
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 413
BspLI GGNNCC 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 1 cut(s) 183
BspT104I TTCGAA 2 cut(s) 171, 247
BspTNI GGTCTC 1 cut(s) 429
BsrBI CCGCTC 1 cut(s) 367
BsrDI GCAATG 2 cut(s) 549, 691
BsrI ACTGG 1 cut(s) 568
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 188, 660
Bst2UI CCWGG 1 cut(s) 80
Bst6I CTCTTC 3 cut(s) 251, 707, 875
BstBI TTCGAA 2 cut(s) 171, 247
BstDEI CTNAG 3 cut(s) 114, 569, 875
BstF5I GGATG 1 cut(s) 523
BstKTI GATC 2 cut(s) 191, 663
BstMAI GTCTC 2 cut(s) 429, 467
BstMBI GATC 2 cut(s) 188, 660
BstMWI GCNNNNNNNGC 3 cut(s) 130, 356, 794
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 2 cut(s) 360, 433
BstV1I GCAGC 3 cut(s) 334, 346, 749
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 1 cut(s) 660
BstYI RGATCY 1 cut(s) 660
Bsu15I ATCGAT 1 cut(s) 413
BsuRI GGCC 1 cut(s) 304
BsuTUI ATCGAT 1 cut(s) 413
BtsCI GGATG 1 cut(s) 523
BtsI GCAGTG 2 cut(s) 162, 792
BtsIMutI CAGTG 2 cut(s) 162, 792
CaiI CAGNNNCTG 1 cut(s) 113
ClaI ATCGAT 1 cut(s) 413
Csp6I GTAC 1 cut(s) 860
CviAII CATG 2 cut(s) 428, 811
CviQI GTAC 1 cut(s) 860
DdeI CTNAG 3 cut(s) 114, 569, 875
DpnI GATC 2 cut(s) 190, 662
DpnII GATC 2 cut(s) 188, 660
Eam1104I CTCTTC 3 cut(s) 251, 707, 875
EarI CTCTTC 3 cut(s) 251, 707, 875
Eco147I AGGCCT 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 845
Eco31I GGTCTC 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 845
FaeI CATG 2 cut(s) 431, 814
FalI AAGNNNNNCTT 2 cut(s) 262, 294
FatI CATG 2 cut(s) 427, 810
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 5 cut(s) 9, 348, 360, 368, 738
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 845
Fsp4HI GCNGC 5 cut(s) 9, 348, 360, 368, 738
FspBI CTAG 2 cut(s) 252, 512
GluI GCNGC 5 cut(s) 9, 348, 360, 368, 738
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 304
HapII CCGG 2 cut(s) 421, 836
Hin1II CATG 2 cut(s) 431, 814
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 5 cut(s) 72, 379, 475, 497, 758
HpaII CCGG 2 cut(s) 421, 836
HphI GGTGA 4 cut(s) 67, 274, 629, 688
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 5 cut(s) 100, 115, 391, 496, 502
Hpy188III TCNNGA 3 cut(s) 62, 374, 686
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 254, 468, 694
HpyCH4V TGCA 6 cut(s) 299, 362, 385, 593, 623, 696
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 356, 794
HpyF3I CTNAG 3 cut(s) 114, 569, 875
Hsp92II CATG 2 cut(s) 431, 814
Kzo9I GATC 2 cut(s) 188, 660
LmnI GCTCC 2 cut(s) 178, 423
Lsp1109I GCAGC 3 cut(s) 334, 346, 749
LweI GCATC 3 cut(s) 405, 529, 610
MaeI CTAG 2 cut(s) 252, 512
MaeIII GTNAC 2 cut(s) 26, 676
MalI GATC 2 cut(s) 190, 662
MbiI CCGCTC 1 cut(s) 367
MboI GATC 2 cut(s) 188, 660
MflI RGATCY 1 cut(s) 660
MhlI GDGCHC 1 cut(s) 845
MluCI AATT 3 cut(s) 210, 463, 635
MlyI GAGTC 4 cut(s) 388, 469, 491, 752
MmeI TCCRAC 2 cut(s) 560, 588
MnlI CCTC 7 cut(s) 113, 252, 258, 304, 508, 552, 578
MroXI GAANNNNTTC 1 cut(s) 325
MseI TTAA 2 cut(s) 657, 672
MspI CCGG 2 cut(s) 421, 836
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 130, 356, 794
NdeI CATATG 1 cut(s) 220
NdeII GATC 2 cut(s) 188, 660
NlaIII CATG 2 cut(s) 431, 814
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 676
NspV TTCGAA 2 cut(s) 171, 247
PceI AGGCCT 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 325
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 5 cut(s) 10, 349, 361, 369, 739
PleI GAGTC 4 cut(s) 387, 469, 491, 752
PpsI GAGTC 4 cut(s) 387, 469, 491, 752
Psp6I CCWGG 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 180
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 660
RsaI GTAC 1 cut(s) 861
RsaNI GTAC 1 cut(s) 860
SaqAI TTAA 2 cut(s) 657, 672
SatI GCNGC 5 cut(s) 9, 348, 360, 368, 738
Sau3AI GATC 2 cut(s) 188, 660
SchI GAGTC 4 cut(s) 388, 469, 491, 752
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 845
SfaNI GCATC 3 cut(s) 405, 529, 610
SfcI CTRYAG 2 cut(s) 360, 433
SfuI TTCGAA 2 cut(s) 171, 247
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
Sse9I AATT 3 cut(s) 210, 463, 635
SseBI AGGCCT 1 cut(s) 304
SsiI CCGC 2 cut(s) 9, 367
SspMI CTAG 2 cut(s) 252, 512
StuI AGGCCT 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 78
TaqI TCGA 4 cut(s) 171, 247, 413, 807
TasI AATT 3 cut(s) 210, 463, 635
TatI WGTACW 1 cut(s) 859
TauI GCSGC 2 cut(s) 11, 370
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 2 cut(s) 657, 672
Tru9I TTAA 2 cut(s) 657, 672
TscAI CASTG 2 cut(s) 169, 799
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 3 cut(s) 347, 359, 737
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 6 cut(s) 264, 270, 348, 534, 546, 827
TspRI CASTG 2 cut(s) 169, 799
XmnI GAANNNNTTC 1 cut(s) 325
XspI CTAG 2 cut(s) 252, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.