FvH4_2g04342

DNA-directed DNA polymerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017237
Physical Location & Seq
Reverse (-)
3378203 .. 3379196
994 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04342.t1

Sequence Viewer

Length: 705 bp
ATGTTTCTGAATCCGACTCCTTCCTCAAGTGTTCCACAATCCCAGATAAAAATGGAACTAGCATCAATGGCGGCAAGTTCCAACTTCTCCATACTAAACCCCAGATGCCCATTTAGAACCCAAATTGCTTCACAACTTCAGGCTTCAATCCAGAATAGCACCACCCCAGTTCAGAATAGAAAGGAGGATAGCTTTGAAGTTACTATGCCAACCATGTCTGAGATATTGGAATCATCAAGGTCCCAGAAACTAGACCTTAAGCTTCAAATTCTAGGACCCTTTTTCAGAATCACAGCCAAAAGCTTGGAAACAGAGGAAGAGCTTGGCAGGGCTGAGGGTTTCATAAGGGTCTGGCTCAGAAGGAGAATTCTTCACTTGGATTCAATCAGGTTGCGAAGAGAGACGATCGGAATGGAGAAGTCAATCTTTGGCATTGGTTTGTTCATTGGAGCAGTAGCAATTCGGCATGGCTATGATTGTGGTTGCAACACAGCTGAGTTGCTGGCTATCAATGACTCTGACAAGTACCATCACAAGCTTGTTAGGTTCTATTCAAGAATCGGGTTCAAGGCTGTGTATGAAGTGACTGGTTCAACATTTGGAGACCTTGCTCACATGCTGGTTTGGGGAGGAGTTGGGACCAGAATGGATGCCAAAGTTGAAGCACTGCTGATAAAATGGTGCAGCAGGTTCAAATCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.44

Weight (kDa)

9.51

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017237)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04342
malus_domestica MD05G1100100.v1.1 MD05G1100400.v1.1
prunus_persica Prupe.8G144800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253801
rosa_laevigata RLG00000014969
rosa_roxburghii Rroxscaffold_7G00211510
rosa_rugosa Rorug05G0547300
rosa_samantha Rh6AG062900 Rh6BG056200 Rh6CG056300 Rh6DG054100
rosa_wichuraiana Rw6G005600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 678
AciI CCGC 1 cut(s) 71
AcsI RAATTY 2 cut(s) 267, 366
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 1 cut(s) 527
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 9 cut(s) 147, 197, 266, 384, 555, 568, 594, 662, 694
AluBI AGCT 6 cut(s) 192, 262, 303, 322, 494, 538
AluI AGCT 6 cut(s) 192, 262, 303, 322, 494, 538
Alw26I GTCTC 2 cut(s) 395, 597
ApeKI GCWGC 1 cut(s) 684
ApoI RAATTY 2 cut(s) 267, 366
AspS9I GGNCC 3 cut(s) 240, 275, 639
AvaII GGWCC 3 cut(s) 240, 275, 639
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 696
BccI CCATC 1 cut(s) 537
BcoDI GTCTC 2 cut(s) 395, 597
BfaI CTAG 3 cut(s) 59, 251, 272
BfrI CTTAAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 678
BisI GCNGC 2 cut(s) 72, 685
BlsI GCNGC 2 cut(s) 73, 686
Bme18I GGWCC 3 cut(s) 240, 275, 639
BmgT120I GGNCC 3 cut(s) 240, 275, 639
BmiI GGNNCC 3 cut(s) 242, 277, 640
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 3 cut(s) 71, 95, 640
BmuI ACTGGG 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 10
BsaI GGTCTC 1 cut(s) 597
Bse1I ACTGG 2 cut(s) 167, 592
BseGI GGATG 1 cut(s) 655
BseMII CTCAG 4 cut(s) 210, 324, 370, 486
BseNI ACTGG 2 cut(s) 167, 592
BseRI GAGGAG 1 cut(s) 645
BseXI GCAGC 1 cut(s) 696
BsgI GTGCAG 1 cut(s) 703
Bsh1285I CGRYCG 1 cut(s) 408
BsiEI CGRYCG 1 cut(s) 408
BslFI GGGAC 2 cut(s) 226, 652
BsmAI GTCTC 2 cut(s) 395, 597
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 226, 652
Bso31I GGTCTC 1 cut(s) 597
Bsp143I GATC 1 cut(s) 405
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 4 cut(s) 211, 325, 369, 487
BspLI GGNNCC 3 cut(s) 242, 277, 640
BspMI ACCTGC 1 cut(s) 678
BspQI GCTCTTC 1 cut(s) 312
BspTI CTTAAG 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 597
BsrI ACTGG 2 cut(s) 167, 592
BssMI GATC 1 cut(s) 405
Bst6I CTCTTC 2 cut(s) 312, 391
BstAFI CTTAAG 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 4 cut(s) 219, 333, 356, 495
BstF5I GGATG 1 cut(s) 655
BstKTI GATC 1 cut(s) 408
BstMAI GTCTC 2 cut(s) 395, 597
BstMBI GATC 1 cut(s) 405
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 619
BstV1I GCAGC 1 cut(s) 696
BstXI CCANNNNNNTGG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 655
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 1 cut(s) 665
BveI ACCTGC 1 cut(s) 678
Cac8I GCNNGC 1 cut(s) 504
Cfr13I GGNCC 3 cut(s) 240, 275, 639
Csp6I GTAC 1 cut(s) 526
CviAII CATG 3 cut(s) 214, 467, 616
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 4 cut(s) 219, 333, 356, 495
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
Eam1104I CTCTTC 2 cut(s) 312, 391
EarI CTCTTC 2 cut(s) 312, 391
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 3 cut(s) 240, 275, 639
Eco57I CTGAAG 1 cut(s) 122
EcoO109I RGGNCCY 2 cut(s) 240, 275
EcoRI GAATTC 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 3 cut(s) 217, 470, 619
FaiI YATR 8 cut(s) 92, 206, 215, 344, 468, 474, 579, 617
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FaqI GGGAC 2 cut(s) 226, 652
FatI CATG 3 cut(s) 213, 466, 615
Fnu4HI GCNGC 2 cut(s) 72, 685
FokI GGATG 1 cut(s) 662
Fsp4HI GCNGC 2 cut(s) 72, 685
FspBI CTAG 3 cut(s) 59, 251, 272
GluI GCNGC 2 cut(s) 72, 685
Hin1II CATG 3 cut(s) 217, 470, 619
HindIII AAGCTT 3 cut(s) 260, 301, 536
HinfI GANTC 7 cut(s) 10, 16, 230, 288, 380, 515, 558
Hpy188I TCNGA 8 cut(s) 9, 15, 174, 220, 287, 359, 410, 520
Hpy188III TCNNGA 3 cut(s) 151, 555, 699
HpyAV CCTTC 2 cut(s) 30, 354
HpyCH4V TGCA 2 cut(s) 486, 684
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 4 cut(s) 219, 333, 356, 495
Hsp92II CATG 3 cut(s) 217, 470, 619
Kzo9I GATC 1 cut(s) 405
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 449
Lsp1109I GCAGC 1 cut(s) 696
LweI GCATC 3 cut(s) 71, 95, 640
MaeI CTAG 3 cut(s) 59, 251, 272
MaeIII GTNAC 2 cut(s) 199, 583
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 3 cut(s) 329, 362, 408
MluCI AATT 4 cut(s) 123, 267, 366, 459
MlyI GAGTC 2 cut(s) 10, 509
MmeI TCCRAC 2 cut(s) 38, 105
MnlI CCTC 5 cut(s) 34, 178, 307, 328, 623
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 494
MspCI CTTAAG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 1 cut(s) 405
NlaIII CATG 3 cut(s) 217, 470, 619
NlaIV GGNNCC 3 cut(s) 242, 277, 640
NmuCI GTSAC 1 cut(s) 583
NspI RCATGY 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 312
PfeI GAWTC 5 cut(s) 10, 230, 288, 380, 558
PkrI GCNGC 2 cut(s) 73, 686
Ple19I CGATCG 1 cut(s) 408
PleI GAGTC 2 cut(s) 10, 509
PpsI GAGTC 2 cut(s) 10, 509
PpuMI RGGWCCY 2 cut(s) 240, 275
Psp5II RGGWCCY 2 cut(s) 240, 275
PspN4I GGNNCC 3 cut(s) 242, 277, 640
PspPI GGNCC 3 cut(s) 240, 275, 639
PspPPI RGGWCCY 2 cut(s) 240, 275
PvuI CGATCG 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 72, 685
Sau3AI GATC 1 cut(s) 405
Sau96I GGNCC 3 cut(s) 240, 275, 639
SchI GAGTC 2 cut(s) 10, 509
SfaNI GCATC 3 cut(s) 71, 95, 640
SinI GGWCC 3 cut(s) 240, 275, 639
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 25, 257
SmoI CTYRAG 2 cut(s) 25, 257
Sse9I AATT 4 cut(s) 123, 267, 366, 459
SsiI CCGC 1 cut(s) 71
SspMI CTAG 3 cut(s) 59, 251, 272
TaqI TCGA 1 cut(s) 700
TasI AATT 4 cut(s) 123, 267, 366, 459
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 5 cut(s) 10, 230, 288, 380, 558
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 672
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 1 cut(s) 684
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 3 cut(s) 331, 433, 594
TspRI CASTG 1 cut(s) 672
Vha464I CTTAAG 1 cut(s) 257
VpaK11BI GGWCC 3 cut(s) 240, 275, 639
XapI RAATTY 2 cut(s) 267, 366
XceI RCATGY 1 cut(s) 619
XspI CTAG 3 cut(s) 59, 251, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.