Rroxscaffold_7G00211510

DNA-directed DNA polymerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017237
Physical Location & Seq
Forward (+)
61965997 .. 61969812
3816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211510.1

Sequence Viewer

Length: 822 bp
ATGATGATGTTTCGTGACCTAAGGGAGAAGCGAGCTTTGAAGGAAGTACATAAGGGGTTGGACAAGGGAGGATTATGCAAAAGCATACTTCTTTATGCTTCTGAATCCGCGTCCTTCCTCAAGTGTTCCACTTCACAAGAAAACCCAGATAAGGAGGTAAAAATGGAACTAGCCTCAATGGCTGCAAGTTCCAACTTCTCCATACTGAACCCCAGAAACCCATATAGAACCCAAATTGCTTCTTCATCACTGCACCCATCAATTCAGAATAGCACCACCCCAGTTCAGAATAAAAAGGTGGATAGCATTGAAGTTACTATGCCAACCATGTCTGAGATATTGGACTCATCGAGGTCCCAGAAACTTGGCCTTAAGCTTCAAACTCTAGGACCCTTTTTCAGAATCACAGCCAAAAGCTTAGAAACAGAGAAAGAGCTCGGCAGGGCTGAGGGGTTCATAAGGGTATGGCTAAGCGGGAGAATTCTTCACTTGGATTCAATCAAGTTGCGAAGAGAGACGATTGGAATGGAGAAGTCAATCTTTGGCATTGGTTTGTTCATTGGAGCCGTTGCAATTAGACATGGCTATGATTGTGGTTGCGACAAAGCTGAGTTGCTGGCTATCAATGACTCTGACAAATACCATCACAAGCTTGTTAGGTTCTATTCAAGAATTGGATTCAAAGCTGTGTATGAAGTAACTGGTTCAACATTTGGGGACCTTGCCCACATGTTGGTCTGGGGAGGAGTTGGGACAAGAATGGATGCCAAAGTTGAAGCACTTCTGATAAAATGGTGCAGCAGGTTCAAATCTCGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.62

Weight (kDa)

9.51

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017237)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04342
malus_domestica MD05G1100100.v1.1 MD05G1100400.v1.1
prunus_persica Prupe.8G144800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253801
rosa_laevigata RLG00000014969
rosa_roxburghii Rroxscaffold_7G00211510
rosa_rugosa Rorug05G0547300
rosa_samantha Rh6AG062900 Rh6BG056200 Rh6CG056300 Rh6DG054100
rosa_wichuraiana Rw6G005600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 792
AccB7I CCANNNNNTGG 1 cut(s) 733
AccII CGCG 1 cut(s) 110
AciI CCGC 2 cut(s) 108, 474
AcsI RAATTY 1 cut(s) 480
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 151, 733
AflII CTTAAG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 9 cut(s) 40, 311, 380, 498, 669, 682, 708, 776, 808
AluBI AGCT 7 cut(s) 35, 376, 417, 436, 608, 652, 686
AluI AGCT 7 cut(s) 35, 376, 417, 436, 608, 652, 686
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 509
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 2 cut(s) 182, 798
ApoI RAATTY 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 780
AspS9I GGNCC 3 cut(s) 354, 389, 718
AvaII GGWCC 3 cut(s) 354, 389, 718
AxyI CCTNAGG 1 cut(s) 20
BanII GRGCYC 1 cut(s) 438
Bbv12I GWGCWC 1 cut(s) 438
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 2 cut(s) 169, 810
BccI CCATC 2 cut(s) 265, 651
BceAI ACGGC 1 cut(s) 551
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 2 cut(s) 170, 386
BfrI CTTAAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 792
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 2 cut(s) 183, 799
BlpI GCTNAGC 1 cut(s) 470
BlsI GCNGC 2 cut(s) 184, 800
Bme18I GGWCC 3 cut(s) 354, 389, 718
BmgT120I GGNCC 3 cut(s) 354, 389, 718
BmiI GGNNCC 4 cut(s) 356, 391, 565, 719
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 754
BmuI ACTGGG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 447
Bpu1102I GCTNAGC 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 733
Bse1I ACTGG 2 cut(s) 281, 706
Bse21I CCTNAGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 2 cut(s) 151, 733
BseMII CTCAG 3 cut(s) 324, 438, 600
BseNI ACTGG 2 cut(s) 281, 706
BseRI GAGGAG 1 cut(s) 759
BseXI GCAGC 2 cut(s) 169, 810
BsgI GTGCAG 2 cut(s) 236, 817
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 438
BslFI GGGAC 3 cut(s) 340, 731, 766
BslI CCNNNNNNNGG 2 cut(s) 151, 733
BsmAI GTCTC 1 cut(s) 509
BsmBI CGTCTC 1 cut(s) 509
BsmFI GGGAC 3 cut(s) 340, 731, 766
BsnI GGCC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 438
Bsp1720I GCTNAGC 1 cut(s) 470
BspACI CCGC 2 cut(s) 108, 474
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 3 cut(s) 325, 439, 601
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 4 cut(s) 356, 391, 565, 719
BspMI ACCTGC 1 cut(s) 792
BspTI CTTAAG 1 cut(s) 371
BsrI ACTGG 2 cut(s) 281, 706
Bst4CI ACNGT 1 cut(s) 819
Bst6I CTCTTC 1 cut(s) 505
BstAFI CTTAAG 1 cut(s) 371
BstC8I GCNNGC 2 cut(s) 33, 618
BstDEI CTNAG 6 cut(s) 20, 333, 418, 447, 470, 609
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 509
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 733
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 169, 810
BstXI CCANNNNNNTGG 1 cut(s) 365
Bsu36I CCTNAGG 1 cut(s) 20
BsuRI GGCC 1 cut(s) 369
BtsCI GGATG 1 cut(s) 769
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 248
BveI ACCTGC 1 cut(s) 792
Cac8I GCNNGC 2 cut(s) 33, 618
Cfr13I GGNCC 3 cut(s) 354, 389, 718
CseI GACGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 47
CviAII CATG 3 cut(s) 328, 581, 730
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 6 cut(s) 20, 333, 418, 447, 470, 609
Eam1104I CTCTTC 1 cut(s) 505
EarI CTCTTC 1 cut(s) 505
Ecl136II GAGCTC 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 438
Eco47I GGWCC 3 cut(s) 354, 389, 718
Eco53kI GAGCTC 1 cut(s) 436
Eco81I CCTNAGG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 436
EcoO109I RGGNCCY 3 cut(s) 354, 389, 718
EcoRI GAATTC 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 438
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 3 cut(s) 331, 584, 733
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 3 cut(s) 340, 731, 766
FatI CATG 3 cut(s) 327, 580, 729
FauI CCCGC 1 cut(s) 467
Fnu4HI GCNGC 2 cut(s) 183, 799
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 2 cut(s) 183, 799
FspBI CTAG 2 cut(s) 170, 386
GluI GCNGC 2 cut(s) 183, 799
HaeIII GGCC 1 cut(s) 369
HgaI GACGC 1 cut(s) 99
Hin1II CATG 3 cut(s) 331, 584, 733
HindIII AAGCTT 3 cut(s) 374, 415, 650
HinfI GANTC 6 cut(s) 104, 344, 402, 494, 629, 678
Hpy188I TCNGA 7 cut(s) 103, 267, 288, 334, 401, 634, 786
Hpy188III TCNNGA 3 cut(s) 14, 669, 813
HpyAV CCTTC 2 cut(s) 34, 124
HpyCH4III ACNGT 1 cut(s) 819
HpyCH4V TGCA 5 cut(s) 78, 185, 253, 572, 798
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 6 cut(s) 20, 333, 418, 447, 470, 609
Hsp92II CATG 3 cut(s) 331, 584, 733
LmnI GCTCC 1 cut(s) 563
LpnPI CCDG 9 cut(s) 159, 226, 294, 371, 427, 602, 687, 724, 787
Lsp1109I GCAGC 2 cut(s) 169, 810
LweI GCATC 1 cut(s) 754
MaeI CTAG 2 cut(s) 170, 386
MaeIII GTNAC 3 cut(s) 14, 313, 697
MboII GAAGA 3 cut(s) 234, 476, 522
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 5 cut(s) 234, 261, 480, 573, 672
MlyI GAGTC 2 cut(s) 338, 623
MmeI TCCRAC 2 cut(s) 39, 216
MnlI CCTC 7 cut(s) 62, 128, 148, 184, 345, 442, 737
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 585
MspCI CTTAAG 1 cut(s) 371
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 331, 584, 733
NlaIV GGNNCC 4 cut(s) 356, 391, 565, 719
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 14
NspI RCATGY 1 cut(s) 733
PciI ACATGT 1 cut(s) 729
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 4 cut(s) 104, 402, 494, 678
PflMI CCANNNNNTGG 1 cut(s) 733
PkrI GCNGC 2 cut(s) 184, 800
PleI GAGTC 2 cut(s) 338, 623
PpsI GAGTC 2 cut(s) 338, 623
PpuMI RGGWCCY 3 cut(s) 354, 389, 718
PscI ACATGT 1 cut(s) 729
Psp124BI GAGCTC 1 cut(s) 438
Psp5II RGGWCCY 3 cut(s) 354, 389, 718
PspN4I GGNNCC 4 cut(s) 356, 391, 565, 719
PspPI GGNCC 3 cut(s) 354, 389, 718
PspPPI RGGWCCY 3 cut(s) 354, 389, 718
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 585
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 183, 799
Sau96I GGNCC 3 cut(s) 354, 389, 718
SchI GAGTC 2 cut(s) 338, 623
SduI GDGCHC 1 cut(s) 438
SfaNI GCATC 1 cut(s) 754
SinI GGWCC 3 cut(s) 354, 389, 718
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 2 cut(s) 119, 371
SmoI CTYRAG 2 cut(s) 119, 371
Sse9I AATT 5 cut(s) 234, 261, 480, 573, 672
SsiI CCGC 2 cut(s) 108, 474
SspMI CTAG 2 cut(s) 170, 386
SstI GAGCTC 1 cut(s) 438
TaaI ACNGT 1 cut(s) 819
TaqI TCGA 2 cut(s) 350, 814
TasI AATT 5 cut(s) 234, 261, 480, 573, 672
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 4 cut(s) 104, 402, 494, 678
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 2 cut(s) 182, 798
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 4 cut(s) 234, 445, 547, 708
TspRI CASTG 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 733
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 3 cut(s) 354, 389, 718
XapI RAATTY 1 cut(s) 480
XceI RCATGY 1 cut(s) 733
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 2 cut(s) 170, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.