Rw6G005600

DNA-directed DNA polymerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017237
Physical Location & Seq
Reverse (-)
8962300 .. 8963241
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005600.1

Sequence Viewer

Length: 645 bp
ATGGCTGCAAGTTCCAACTTCTCCATACTGAACCCCAGAAACCCATATAGAACCCAAATTGCTTCTTCATCACTGCACCCATCAATCCAGAATAGCACCACCCCAGTTCAGAATAAAAAGGAGGATAGCATTGAAGTTACTATGCCAACCATGTCTGAGATATTGGACTCATCGAGGTCCCAGAAACTTGGCCTTAAGCTTCAAACTCTAGGACCCTTTTTCAGAATCACAGCCAAAAGCTTAGAAACAGAGAAAGAGCTCGGCAGGGCTGAGGGGTTCATAAGGGTATGGCTAAGCGGGAGAATTCTTCACTTGGATTCAATCAAGTTGCGAAGAGAGACGATTGGAATGGAGAAGTCAATCTTTGGCATTGGTTTGTTCATTGGAGCCGTTGCAATTAGACATGGCTATGATTGTGGTTGCGACAAAGCTGAGTTGCTGGCTATCAATGACTCTGACAAATACCATCACAAGCTTGTTAGGTTCTATTCAAGAATTGGATTCAAAGCTGTGTATGAAGTAACTGGTTCAACATTTGGGGACCTTGCCCACATGTTGGTCTGGGGAGGAGTTGGGACAAGAATGGATGCCAAAGTTGAAGCACTTCTGATAAAATGGTGCAGCAGGTTCAAATCTCGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.98

Weight (kDa)

9.59

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017237)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04342
malus_domestica MD05G1100100.v1.1 MD05G1100400.v1.1
prunus_persica Prupe.8G144800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253801
rosa_laevigata RLG00000014969
rosa_roxburghii Rroxscaffold_7G00211510
rosa_rugosa Rorug05G0547300
rosa_samantha Rh6AG062900 Rh6BG056200 Rh6CG056300 Rh6DG054100
rosa_wichuraiana Rw6G005600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 615
AccB7I CCANNNNNTGG 1 cut(s) 556
AciI CCGC 1 cut(s) 297
AcsI RAATTY 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 556
AflII CTTAAG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 8 cut(s) 134, 203, 321, 492, 505, 531, 599, 631
AluBI AGCT 6 cut(s) 199, 240, 259, 431, 475, 509
AluI AGCT 6 cut(s) 199, 240, 259, 431, 475, 509
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 332
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 5, 621
ApoI RAATTY 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 603
AspS9I GGNCC 3 cut(s) 177, 212, 541
AvaII GGWCC 3 cut(s) 177, 212, 541
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 261
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 633
BccI CCATC 2 cut(s) 88, 474
BceAI ACGGC 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 209
BfrI CTTAAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 615
BisI GCNGC 2 cut(s) 6, 622
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 2 cut(s) 7, 623
Bme18I GGWCC 3 cut(s) 177, 212, 541
BmgT120I GGNCC 3 cut(s) 177, 212, 541
BmiI GGNNCC 4 cut(s) 179, 214, 388, 542
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 577
BmuI ACTGGG 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 556
Bse1I ACTGG 2 cut(s) 104, 529
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 1 cut(s) 556
BseMII CTCAG 3 cut(s) 147, 261, 423
BseNI ACTGG 2 cut(s) 104, 529
BseRI GAGGAG 1 cut(s) 582
BseXI GCAGC 1 cut(s) 633
BsgI GTGCAG 2 cut(s) 59, 640
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 261
BslFI GGGAC 3 cut(s) 163, 554, 589
BslI CCNNNNNNNGG 1 cut(s) 556
BsmAI GTCTC 1 cut(s) 332
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 3 cut(s) 163, 554, 589
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 261
Bsp1720I GCTNAGC 1 cut(s) 293
BspACI CCGC 1 cut(s) 297
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 3 cut(s) 148, 262, 424
BspLI GGNNCC 4 cut(s) 179, 214, 388, 542
BspMI ACCTGC 1 cut(s) 615
BspTI CTTAAG 1 cut(s) 194
BsrI ACTGG 2 cut(s) 104, 529
Bst4CI ACNGT 1 cut(s) 642
Bst6I CTCTTC 1 cut(s) 328
BstAFI CTTAAG 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 5 cut(s) 156, 241, 270, 293, 432
BstF5I GGATG 1 cut(s) 592
BstMAI GTCTC 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 556
BstV1I GCAGC 1 cut(s) 633
BstXI CCANNNNNNTGG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 71
BveI ACCTGC 1 cut(s) 615
Cac8I GCNNGC 1 cut(s) 441
Cfr13I GGNCC 3 cut(s) 177, 212, 541
CviAII CATG 3 cut(s) 151, 404, 553
DdeI CTNAG 5 cut(s) 156, 241, 270, 293, 432
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Ecl136II GAGCTC 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 3 cut(s) 177, 212, 541
Eco53kI GAGCTC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 259
EcoO109I RGGNCCY 3 cut(s) 177, 212, 541
EcoRI GAATTC 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 3 cut(s) 154, 407, 556
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 3 cut(s) 163, 554, 589
FatI CATG 3 cut(s) 150, 403, 552
FauI CCCGC 1 cut(s) 290
Fnu4HI GCNGC 2 cut(s) 6, 622
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 2 cut(s) 6, 622
FspBI CTAG 1 cut(s) 209
GluI GCNGC 2 cut(s) 6, 622
HaeIII GGCC 1 cut(s) 192
Hin1II CATG 3 cut(s) 154, 407, 556
HindIII AAGCTT 3 cut(s) 197, 238, 473
HinfI GANTC 5 cut(s) 167, 225, 317, 452, 501
Hpy188I TCNGA 5 cut(s) 111, 157, 224, 457, 609
Hpy188III TCNNGA 3 cut(s) 88, 492, 636
HpyCH4III ACNGT 1 cut(s) 642
HpyCH4V TGCA 4 cut(s) 8, 76, 395, 621
HpyF3I CTNAG 5 cut(s) 156, 241, 270, 293, 432
Hsp92II CATG 3 cut(s) 154, 407, 556
LmnI GCTCC 1 cut(s) 386
LpnPI CCDG 9 cut(s) 49, 101, 117, 194, 250, 425, 510, 547, 610
Lsp1109I GCAGC 1 cut(s) 633
LweI GCATC 1 cut(s) 577
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 136, 520
MboII GAAGA 3 cut(s) 57, 299, 345
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 4 cut(s) 57, 303, 396, 495
MlyI GAGTC 2 cut(s) 161, 446
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 4 cut(s) 115, 168, 265, 560
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 408
MspCI CTTAAG 1 cut(s) 194
NlaIII CATG 3 cut(s) 154, 407, 556
NlaIV GGNNCC 4 cut(s) 179, 214, 388, 542
NmeAIII GCCGAG 1 cut(s) 240
NspI RCATGY 1 cut(s) 556
PciI ACATGT 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 3 cut(s) 225, 317, 501
PflMI CCANNNNNTGG 1 cut(s) 556
PkrI GCNGC 2 cut(s) 7, 623
PleI GAGTC 2 cut(s) 161, 446
PpsI GAGTC 2 cut(s) 161, 446
PpuMI RGGWCCY 3 cut(s) 177, 212, 541
PscI ACATGT 1 cut(s) 552
Psp124BI GAGCTC 1 cut(s) 261
Psp5II RGGWCCY 3 cut(s) 177, 212, 541
PspN4I GGNNCC 4 cut(s) 179, 214, 388, 542
PspPI GGNCC 3 cut(s) 177, 212, 541
PspPPI RGGWCCY 3 cut(s) 177, 212, 541
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 6, 622
Sau96I GGNCC 3 cut(s) 177, 212, 541
SchI GAGTC 2 cut(s) 161, 446
SduI GDGCHC 1 cut(s) 261
SfaNI GCATC 1 cut(s) 577
SinI GGWCC 3 cut(s) 177, 212, 541
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 4 cut(s) 57, 303, 396, 495
SsiI CCGC 1 cut(s) 297
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 261
TaaI ACNGT 1 cut(s) 642
TaqI TCGA 2 cut(s) 173, 637
TasI AATT 4 cut(s) 57, 303, 396, 495
TfiI GAWTC 3 cut(s) 225, 317, 501
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 78
TseI GCWGC 2 cut(s) 5, 621
TspDTI ATGAA 4 cut(s) 57, 268, 370, 531
TspRI CASTG 1 cut(s) 78
Van91I CCANNNNNTGG 1 cut(s) 556
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 3 cut(s) 177, 212, 541
XapI RAATTY 1 cut(s) 303
XceI RCATGY 1 cut(s) 556
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.