Rh6CG056300

DNA-directed DNA polymerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017237
Physical Location & Seq
Reverse (-)
5726978 .. 5727933
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG056300.1

Sequence Viewer

Length: 660 bp
ATGGAACTAGCCTCAATGGCTGCAAGTTCCAACTTCTCCATGCTGAACCCCAGAAACCCATATAGAACCCAAATTGCTTCTTCATCACTCCACCCATCAATCCAGAATAACACCACTCCAGTTCAGAATAAAAAGGAGGATAGCATTGAAGTTACTATGCCAACCATGTCTGAGATATTGGACTCATCGAGGTCCCAGAAACTTGACCTTAAGCTTCAAACTCTAGGACCCTTTTTCAGAATCACAGCCAAAAACTTAGAAACAGAGAAAGAGCTCGGCAGGGCTGAGGGGTTCATAAGGGTCTGGCTAAGCGGGAGAATTCTTCACTTGGATTCAATCAAGTTGCGAAGAGAGACGATTGGAATGGAGAAGTCAATCTTTGGCATTGGTTTGTTCATTGGAGCCGTTGCAATTAGACATGGCTATGATTGTGGTTGCGACAAAGCTGAGTTGCTGGCTATCAATGACTCTGACAAATACCATCACAAGCTTGTTAGGTTCTATTCAAGAATTGGATTCAAAGCTGTGTATGAAGTAGCTGGTTCAACATTTGGGGACCTTGCCCACATGTTGGTCTGGGGAGGAGTTGGGACAAGAATGGATGCCAAAGTTGAAGCACTTCTGATAAAATGGTGCAGCAGGTTCAAATCTCGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.62

Weight (kDa)

9.38

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017237)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04342
malus_domestica MD05G1100100.v1.1 MD05G1100400.v1.1
prunus_persica Prupe.8G144800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253801
rosa_laevigata RLG00000014969
rosa_roxburghii Rroxscaffold_7G00211510
rosa_rugosa Rorug05G0547300
rosa_samantha Rh6AG062900 Rh6BG056200 Rh6CG056300 Rh6DG054100
rosa_wichuraiana Rw6G005600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 630
AccB7I CCANNNNNTGG 1 cut(s) 571
AciI CCGC 1 cut(s) 312
AcsI RAATTY 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 571
AflII CTTAAG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 8 cut(s) 149, 218, 336, 507, 520, 546, 614, 646
AluBI AGCT 6 cut(s) 214, 274, 446, 490, 524, 539
AluI AGCT 6 cut(s) 214, 274, 446, 490, 524, 539
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 347
ApeKI GCWGC 2 cut(s) 20, 636
ApoI RAATTY 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 618
AspS9I GGNCC 3 cut(s) 192, 227, 556
AvaII GGWCC 3 cut(s) 192, 227, 556
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 7, 648
BccI CCATC 2 cut(s) 103, 489
BceAI ACGGC 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 2 cut(s) 8, 224
BfrI CTTAAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 630
BglI GCCNNNNNGGC 1 cut(s) 17
BisI GCNGC 2 cut(s) 21, 637
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 2 cut(s) 22, 638
Bme18I GGWCC 3 cut(s) 192, 227, 556
BmgT120I GGNCC 3 cut(s) 192, 227, 556
BmiI GGNNCC 4 cut(s) 194, 229, 403, 557
BmsI GCATC 1 cut(s) 592
BpmI CTGGAG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMII CTCAG 3 cut(s) 162, 276, 438
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 7, 648
BsgI GTGCAG 1 cut(s) 655
BsiHKAI GWGCWC 1 cut(s) 276
BslFI GGGAC 3 cut(s) 178, 569, 604
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 1 cut(s) 347
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 3 cut(s) 178, 569, 604
Bsp1286I GDGCHC 1 cut(s) 276
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 1 cut(s) 312
BspCNI CTCAG 3 cut(s) 163, 277, 439
BspLI GGNNCC 4 cut(s) 194, 229, 403, 557
BspMI ACCTGC 1 cut(s) 630
BspTI CTTAAG 1 cut(s) 209
BsrI ACTGG 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 343
BstAFI CTTAAG 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 5 cut(s) 171, 256, 285, 308, 447
BstF5I GGATG 1 cut(s) 607
BstMAI GTCTC 1 cut(s) 347
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 571
BstV1I GCAGC 2 cut(s) 7, 648
BtsCI GGATG 1 cut(s) 607
BveI ACCTGC 1 cut(s) 630
Cac8I GCNNGC 1 cut(s) 456
Cfr13I GGNCC 3 cut(s) 192, 227, 556
CviAII CATG 4 cut(s) 40, 166, 419, 568
DdeI CTNAG 5 cut(s) 171, 256, 285, 308, 447
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 3 cut(s) 192, 227, 556
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoO109I RGGNCCY 3 cut(s) 192, 227, 556
EcoRI GAATTC 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 4 cut(s) 43, 169, 422, 571
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 3 cut(s) 178, 569, 604
FatI CATG 4 cut(s) 39, 165, 418, 567
FauI CCCGC 1 cut(s) 305
Fnu4HI GCNGC 2 cut(s) 21, 637
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 2 cut(s) 21, 637
FspBI CTAG 2 cut(s) 8, 224
GluI GCNGC 2 cut(s) 21, 637
GsuI CTGGAG 1 cut(s) 102
Hin1II CATG 4 cut(s) 43, 169, 422, 571
HindIII AAGCTT 2 cut(s) 212, 488
HinfI GANTC 5 cut(s) 182, 240, 332, 467, 516
Hpy188I TCNGA 5 cut(s) 126, 172, 239, 472, 624
Hpy188III TCNNGA 2 cut(s) 103, 507
HpyCH4V TGCA 3 cut(s) 23, 410, 636
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 5 cut(s) 171, 256, 285, 308, 447
Hsp92II CATG 4 cut(s) 43, 169, 422, 571
LmnI GCTCC 1 cut(s) 401
Lsp1109I GCAGC 2 cut(s) 7, 648
LweI GCATC 1 cut(s) 592
MaeI CTAG 2 cut(s) 8, 224
MaeIII GTNAC 1 cut(s) 151
MboII GAAGA 3 cut(s) 72, 314, 360
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 4 cut(s) 72, 318, 411, 510
MlyI GAGTC 2 cut(s) 176, 461
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 22, 130, 183, 280, 575
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 423
MspCI CTTAAG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 17
NlaIII CATG 4 cut(s) 43, 169, 422, 571
NlaIV GGNNCC 4 cut(s) 194, 229, 403, 557
NmeAIII GCCGAG 1 cut(s) 255
NspI RCATGY 1 cut(s) 571
PciI ACATGT 1 cut(s) 567
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 3 cut(s) 240, 332, 516
PflMI CCANNNNNTGG 1 cut(s) 571
PkrI GCNGC 2 cut(s) 22, 638
PleI GAGTC 2 cut(s) 176, 461
PpsI GAGTC 2 cut(s) 176, 461
PpuMI RGGWCCY 3 cut(s) 192, 227, 556
PscI ACATGT 1 cut(s) 567
Psp124BI GAGCTC 1 cut(s) 276
Psp5II RGGWCCY 3 cut(s) 192, 227, 556
PspN4I GGNNCC 4 cut(s) 194, 229, 403, 557
PspPI GGNCC 3 cut(s) 192, 227, 556
PspPPI RGGWCCY 3 cut(s) 192, 227, 556
RseI CAYNNNNRTG 1 cut(s) 423
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 21, 637
Sau96I GGNCC 3 cut(s) 192, 227, 556
SchI GAGTC 2 cut(s) 176, 461
SduI GDGCHC 1 cut(s) 276
SfaNI GCATC 1 cut(s) 592
SinI GGWCC 3 cut(s) 192, 227, 556
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 4 cut(s) 72, 318, 411, 510
SsiI CCGC 1 cut(s) 312
SspMI CTAG 2 cut(s) 8, 224
SstI GAGCTC 1 cut(s) 276
TaqI TCGA 1 cut(s) 188
TasI AATT 4 cut(s) 72, 318, 411, 510
TfiI GAWTC 3 cut(s) 240, 332, 516
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 2 cut(s) 20, 636
TspDTI ATGAA 4 cut(s) 72, 283, 385, 546
Van91I CCANNNNNTGG 1 cut(s) 571
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 3 cut(s) 192, 227, 556
XapI RAATTY 1 cut(s) 318
XceI RCATGY 1 cut(s) 571
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 2 cut(s) 8, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.