FvH4_2g04690

Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016746
Physical Location & Seq
Reverse (-)
3627568 .. 3628448
881 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04690.t1

Sequence Viewer

Length: 723 bp
ATGGAAAATAGTGGAAGCGGTTCAATTTCGAGGAACAGGAGGTTGGGGAGCTTTTTTAACACAAGCTCTAGTCCAACTGCAAAAAGAACATTGGAAAATTCGGACAAGGAAGTAGGACACAAAGTTGATGTCAATGAAGATGGTCTGGGATTCAAACTGATATCTTGGGTAAGAATTCTCACATGTTTCATTATGATTGTGGTTACAACTTTGATGTGGGCATTGATCATGCTTGTACTCCTACCATGGCCTTATGAGAGGATAAAGCAAGGCACAGTTAGTATTGCAAAAAAGGAGGTCATATGGTATCCCCTCTTAGGACAACTTTACGTACTGGCCAACCGTCTTCGTATAGATCGCTCCAATCCGGCAGTAGCCATTGAGTCTCTGAAAGAGGCAGCTAAGGCAGTCGTGAGGAAGAAACTTTCTTTGGTCATATTTCCTGAGGGCACAAGGTCAGTAGATGGAAGACTACTCCCTTTCAAAAAGGGCTTTGTTCATCTGGCATTGCAAACTGGCCTCCCAATAGTTCCCATTGTCCTTGTAGGTACCCATCGAGCACGGAGGAAGGATAGATTACGCGTAACACCTCTAACTCTAAAGTTCCTTCCTCCAATAAGAACTGATTATTGGACAGCTGAAAAGATTGATGAATACATCAAAATGATACAAGACTTGTATGTCCAACATCTTCCAGACTCACAGAGGCCTCTCTTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 ko04975 map00561 map00564 map01100 map01110 map04072 map04975
Pfam Domains
Protein Families
Acyltransferase

Protein Analysis

241

Amino Acids

27.34

Weight (kDa)

10.1

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 89 - 181 4.9e-22 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016746)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04690
malus_domestica MD03G1201900.v1.1 MD11G1219100.v1.1
rosa_chinensis RchiOBHm_Chr5g0039361
rosa_laevigata RLG00000033907
rosa_multiflora Rmu_sc0006018.1_g000001
rosa_roxburghii Rroxscaffold_1G00040510 Rroxscaffold_1G00041840
rosa_rugosa Rorug05G0178300
rosa_samantha Rh5AG264500 Rh5BG269500 Rh5CG302500 Rh5DG277300
rosa_wichuraiana Rw5G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 680
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 548
AccII CGCG 1 cut(s) 582
AciI CCGC 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 2 cut(s) 97, 174
AfaI GTAC 3 cut(s) 237, 333, 550
AfiI CCNNNNNNNGG 1 cut(s) 317
AflIII ACRYGT 2 cut(s) 182, 580
AgsI TTSAA 3 cut(s) 24, 154, 484
AjuI GAANNNNNNNTTGG 6 cut(s) 26, 58, 413, 445, 613, 645
AluBI AGCT 4 cut(s) 51, 66, 401, 638
AluI AGCT 4 cut(s) 51, 66, 401, 638
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 1 cut(s) 390
AoxI GGCC 4 cut(s) 248, 336, 517, 707
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 2 cut(s) 97, 174
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
Asp700I GAANNNNTTC 1 cut(s) 19
Asp718I GGTACC 1 cut(s) 548
AxyI CCTNAGG 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 452
BalI TGGCCA 1 cut(s) 338
BanI GGYRCC 1 cut(s) 548
BbsI GAAGAC 2 cut(s) 338, 475
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 1 cut(s) 410
BccI CCATC 3 cut(s) 134, 458, 561
BciVI GTATCC 1 cut(s) 318
BclI TGATCA 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 1 cut(s) 69
BfuI GTATCC 1 cut(s) 318
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 550
BpiI GAAGAC 2 cut(s) 338, 475
Bpu10I CCTNAGC 1 cut(s) 402
BsaAI YACGTR 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 339, 520
Bse21I CCTNAGG 1 cut(s) 444
Bse3DI GCAATG 1 cut(s) 506
BseDI CCNNGG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 506
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 2 cut(s) 339, 520
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 4 cut(s) 250, 338, 519, 709
BshNI GGYRCC 1 cut(s) 548
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 390
BsnI GGCC 4 cut(s) 250, 338, 519, 709
Bsp1286I GDGCHC 2 cut(s) 452, 562
Bsp143I GATC 2 cut(s) 225, 355
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 1 cut(s) 18
BspANI GGCC 4 cut(s) 250, 338, 519, 709
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 582
BspLI GGNNCC 1 cut(s) 550
BspT107I GGYRCC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 506
BsrI ACTGG 2 cut(s) 339, 520
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 2 cut(s) 225, 355
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 277, 344
BstBAI YACGTR 1 cut(s) 331
BstDEI CTNAG 3 cut(s) 316, 402, 444
BstDSI CCRYGG 1 cut(s) 245
BstFNI CGCG 1 cut(s) 582
BstKTI GATC 2 cut(s) 228, 358
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 2 cut(s) 225, 355
BstMWI GCNNNNNNNGC 2 cut(s) 404, 715
BstNSI RCATGY 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 452
BstSNI TACGTA 1 cut(s) 331
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 410
BstV2I GAAGAC 2 cut(s) 338, 475
Bsu36I CCTNAGG 1 cut(s) 444
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 4 cut(s) 250, 338, 519, 709
BtgI CCRYGG 1 cut(s) 245
Csp6I GTAC 3 cut(s) 236, 332, 549
CviAII CATG 3 cut(s) 183, 229, 246
CviQI GTAC 3 cut(s) 236, 332, 549
DdeI CTNAG 3 cut(s) 316, 402, 444
DpnI GATC 2 cut(s) 227, 357
DpnII GATC 2 cut(s) 225, 355
DrdI GACNNNNNNGTC 1 cut(s) 680
DseDI GACNNNNNNGTC 1 cut(s) 680
EaeI YGGCCR 1 cut(s) 336
Eco105I TACGTA 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 245
Eco147I AGGCCT 1 cut(s) 709
Eco32I GATATC 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 174
EcoRV GATATC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 3 cut(s) 186, 232, 249
FatI CATG 3 cut(s) 182, 228, 245
FauNDI CATATG 1 cut(s) 302
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 399
HaeIII GGCC 4 cut(s) 250, 338, 519, 709
HapII CCGG 1 cut(s) 368
Hin1II CATG 3 cut(s) 186, 232, 249
HinfI GANTC 3 cut(s) 150, 383, 698
HpaII CCGG 1 cut(s) 368
Hpy188I TCNGA 2 cut(s) 103, 390
Hpy188III TCNNGA 3 cut(s) 412, 443, 695
HpyAV CCTTC 2 cut(s) 562, 617
HpyCH4III ACNGT 2 cut(s) 277, 344
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 4 cut(s) 80, 287, 511, 718
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 715
HpyF3I CTNAG 3 cut(s) 316, 402, 444
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 3 cut(s) 186, 232, 249
KpnI GGTACC 1 cut(s) 552
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 2 cut(s) 225, 355
LmnI GCTCC 2 cut(s) 48, 365
LpnPI CCDG 8 cut(s) 22, 131, 320, 381, 456, 488, 501, 708
Lsp1109I GCAGC 1 cut(s) 410
MaeI CTAG 1 cut(s) 69
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 202, 583
MalI GATC 2 cut(s) 227, 357
MboI GATC 2 cut(s) 225, 355
MboII GAAGA 5 cut(s) 149, 338, 430, 480, 683
MhlI GDGCHC 2 cut(s) 452, 562
MlsI TGGCCA 1 cut(s) 338
MluCI AATT 3 cut(s) 24, 97, 174
MluI ACGCGT 1 cut(s) 580
MluNI TGGCCA 1 cut(s) 338
MlyI GAGTC 2 cut(s) 392, 692
MmeI TCCRAC 2 cut(s) 98, 709
Mox20I TGGCCA 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 19
MscI TGGCCA 1 cut(s) 338
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 662
Msp20I TGGCCA 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 1 cut(s) 368
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 2 cut(s) 404, 715
NcoI CCATGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 302
NdeII GATC 2 cut(s) 225, 355
NlaIII CATG 3 cut(s) 186, 232, 249
NlaIV GGNNCC 1 cut(s) 550
NspI RCATGY 1 cut(s) 186
PceI AGGCCT 1 cut(s) 709
PciI ACATGT 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 2 cut(s) 391, 692
PpsI GAGTC 2 cut(s) 391, 692
Ppu21I YACGTR 1 cut(s) 331
PscI ACATGT 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 550
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 3 cut(s) 237, 333, 550
RsaNI GTAC 3 cut(s) 236, 332, 549
RseI CAYNNNNRTG 1 cut(s) 662
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 225, 355
SchI GAGTC 2 cut(s) 392, 692
SduI GDGCHC 2 cut(s) 452, 562
SmiMI CAYNNNNRTG 1 cut(s) 662
SnaBI TACGTA 1 cut(s) 331
Sse9I AATT 3 cut(s) 24, 97, 174
SseBI AGGCCT 1 cut(s) 709
SsiI CCGC 1 cut(s) 18
SspMI CTAG 1 cut(s) 69
StuI AGGCCT 1 cut(s) 709
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 277, 344
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 29, 556
TasI AATT 3 cut(s) 24, 97, 174
TatI WGTACW 1 cut(s) 235
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 4 cut(s) 150, 178, 488, 666
TspGWI ACGGA 1 cut(s) 577
XapI RAATTY 2 cut(s) 97, 174
XceI RCATGY 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.