MD11G1219100.v1.1

Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016746
Physical Location & Seq
Forward (+)
31950764 .. 31952343
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1219100.v1.1.491

Sequence Viewer

Length: 627 bp
ATGAACCTTTGGTTAATGGAAAACACTGGAACTAGTCCTCTTTTAAGAAGTAGAAGGTTGGGGAGCTTTTTGAGCACAAGCTCTGGTCCAGGAGTGAGAGGAACACCGAAAATTCCGGTGAAAAAAGTAGGACAAACGCTGAGGCATGATGTTTGTGTCGGTGAGGACGGTTGGGGATCCACACTGATATCTTGTGGTAGAATGGCCACATGTTTTATAACGGTGATGGTTTTAACTGTGATATGGGCAGTGATCATGGTTGTGCTCATACCATGGCCTTATGAGAGGATTAAGCAAGGAAATGTTTATGGACACGTTACTGGTAGATTGATGGGCACCAGGTCAAGAGATGGACGACTGCTCCCCTTCAAAAAGGGCTTTGTTCATCTGGCATTGCAAACAGGTCTCCCAATAGTTCCCATGGTCCTGACGGGTACCCATCAAGCATGGAGGAAGGGTAGCTTACATGTTCGGCCAGCATCTCTAAGCGTAAAGTATCCTCCTCCGATAAAAACTGATGGTTGGACAGCTGACAAGATTGACGAACATATTAAAATGGTACATGACTTGTATGTCCAATACACCTTCCACAGTCACAGAAGCCTCTTGTGCTGGAGTTGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 ko04975 map00561 map00564 map01100 map01110 map04072 map04975
Pfam Domains
Protein Families
Acyltransferase

Protein Analysis

209

Amino Acids

23.23

Weight (kDa)

10.03

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 112 - 143 1.7e-07 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016746)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04690
malus_domestica MD03G1201900.v1.1 MD11G1219100.v1.1
rosa_chinensis RchiOBHm_Chr5g0039361
rosa_laevigata RLG00000033907
rosa_multiflora Rmu_sc0006018.1_g000001
rosa_roxburghii Rroxscaffold_1G00040510 Rroxscaffold_1G00041840
rosa_rugosa Rorug05G0178300
rosa_samantha Rh5AG264500 Rh5BG269500 Rh5CG302500 Rh5DG277300
rosa_wichuraiana Rw5G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AasI GACNNNNNNGTC 1 cut(s) 572
Acc65I GGTACC 1 cut(s) 434
AccB1I GGYRCC 2 cut(s) 335, 434
AclWI GGATC 2 cut(s) 171, 184
AcoI YGGCCR 2 cut(s) 204, 473
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 2 cut(s) 436, 561
AflIII ACRYGT 3 cut(s) 209, 313, 466
AgsI TTSAA 1 cut(s) 370
AhlI ACTAGT 1 cut(s) 32
AjnI CCWGG 2 cut(s) 88, 338
AluBI AGCT 4 cut(s) 66, 81, 462, 530
AluI AGCT 4 cut(s) 66, 81, 462, 530
Alw21I GWGCWC 2 cut(s) 77, 267
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 2 cut(s) 171, 184
AoxI GGCC 3 cut(s) 204, 275, 473
ApoI RAATTY 1 cut(s) 111
Asp718I GGTACC 1 cut(s) 434
AspS9I GGNCC 2 cut(s) 86, 424
AsuHPI GGTGA 3 cut(s) 130, 173, 235
AvaII GGWCC 2 cut(s) 86, 424
BaeGI GKGCMC 1 cut(s) 338
BalI TGGCCA 1 cut(s) 206
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 2 cut(s) 335, 434
Bbv12I GWGCWC 2 cut(s) 77, 267
BbvCI CCTCAGC 1 cut(s) 140
BccI CCATC 5 cut(s) 220, 325, 344, 447, 512
BciT130I CCWGG 2 cut(s) 90, 340
BciVI GTATCC 1 cut(s) 507
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 410
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 1 cut(s) 33
BfuI GTATCC 1 cut(s) 507
Bme1390I CCNGG 2 cut(s) 90, 340
Bme18I GGWCC 2 cut(s) 86, 424
BmgT120I GGNCC 2 cut(s) 86, 424
BmiI GGNNCC 3 cut(s) 178, 337, 436
BmrFI CCNGG 2 cut(s) 90, 340
BmsI GCATC 1 cut(s) 488
Bpu10I CCTNAGC 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 272, 420
BsaWI WCCGGW 1 cut(s) 115
BsaXI ACNNNNNCTCC 4 cut(s) 345, 375, 442, 472
Bse1I ACTGG 2 cut(s) 31, 325
Bse3DI GCAATG 1 cut(s) 392
BseBI CCWGG 2 cut(s) 90, 340
BseDI CCNNGG 2 cut(s) 272, 420
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 31, 325
BseRI GAGGAG 1 cut(s) 492
BseSI GKGCMC 1 cut(s) 338
BshFI GGCC 3 cut(s) 206, 277, 475
BshNI GGYRCC 2 cut(s) 335, 434
BsiHKAI GWGCWC 2 cut(s) 77, 267
BsiSI CCGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 410
BsnI GGCC 3 cut(s) 206, 277, 475
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 3 cut(s) 77, 267, 338
Bsp143I GATC 2 cut(s) 176, 252
Bsp19I CCATGG 2 cut(s) 272, 420
BspANI GGCC 3 cut(s) 206, 277, 475
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 178, 337, 436
BspPI GGATC 2 cut(s) 171, 184
BspT107I GGYRCC 2 cut(s) 335, 434
BspTNI GGTCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 392
BsrI ACTGG 2 cut(s) 31, 325
BssECI CCNNGG 2 cut(s) 272, 420
BssMI GATC 2 cut(s) 176, 252
BssT1I CCWWGG 2 cut(s) 272, 420
Bst2UI CCWGG 2 cut(s) 90, 340
Bst4CI ACNGT 4 cut(s) 170, 223, 238, 593
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 3 cut(s) 140, 485, 624
BstDSI CCRYGG 2 cut(s) 272, 420
BstKTI GATC 2 cut(s) 179, 255
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 2 cut(s) 176, 252
BstMWI GCNNNNNNNGC 3 cut(s) 72, 609, 618
BstNI CCWGG 2 cut(s) 90, 340
BstNSI RCATGY 2 cut(s) 213, 470
BstSCI CCNGG 2 cut(s) 88, 338
BstSLI GKGCMC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 3 cut(s) 206, 277, 475
BtgI CCRYGG 2 cut(s) 272, 420
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 3 cut(s) 24, 182, 255
Cac8I GCNNGC 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 86, 424
CsiI ACCWGGT 1 cut(s) 338
Csp6I GTAC 2 cut(s) 435, 560
CviAII CATG 8 cut(s) 146, 210, 256, 273, 421, 447, 467, 563
CviJI RGCY 9 cut(s) 66, 81, 206, 277, 378, 462, 475, 530, 603
CviKI_1 RGCY 9 cut(s) 66, 81, 206, 277, 378, 462, 475, 530, 603
CviQI GTAC 2 cut(s) 435, 560
DdeI CTNAG 3 cut(s) 140, 485, 624
DpnI GATC 2 cut(s) 178, 254
DpnII GATC 2 cut(s) 176, 252
DrdI GACNNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 572
EaeI YGGCCR 2 cut(s) 204, 473
Eco130I CCWWGG 2 cut(s) 272, 420
Eco31I GGTCTC 1 cut(s) 410
Eco32I GATATC 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 86, 424
EcoRII CCWGG 2 cut(s) 88, 338
EcoRV GATATC 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 272, 420
ErhI CCWWGG 2 cut(s) 272, 420
FaeI CATG 8 cut(s) 149, 213, 259, 276, 424, 450, 470, 566
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FatI CATG 8 cut(s) 145, 209, 255, 272, 420, 446, 466, 562
FbaI TGATCA 1 cut(s) 252
FspBI CTAG 1 cut(s) 33
HaeIII GGCC 3 cut(s) 206, 277, 475
HapII CCGG 1 cut(s) 116
Hin1II CATG 8 cut(s) 149, 213, 259, 276, 424, 450, 470, 566
HpaII CCGG 1 cut(s) 116
HphI GGTGA 3 cut(s) 130, 173, 235
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 2 cut(s) 345, 427
HpyAV CCTTC 4 cut(s) 48, 376, 448, 595
HpyCH4III ACNGT 4 cut(s) 170, 223, 238, 593
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 609, 618
HpyF3I CTNAG 3 cut(s) 140, 485, 624
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 8 cut(s) 149, 213, 259, 276, 424, 450, 470, 566
KpnI GGTACC 1 cut(s) 438
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 2 cut(s) 176, 252
LmnI GCTCC 2 cut(s) 63, 366
LweI GCATC 1 cut(s) 488
MabI ACCWGGT 1 cut(s) 338
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 316, 593
MalI GATC 2 cut(s) 178, 254
MboI GATC 2 cut(s) 176, 252
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 3 cut(s) 77, 267, 338
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 1 cut(s) 111
MluNI TGGCCA 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 503
MnlI CCTC 9 cut(s) 48, 92, 135, 157, 279, 444, 510, 513, 614
Mox20I TGGCCA 1 cut(s) 206
MscI TGGCCA 1 cut(s) 206
MseI TTAA 5 cut(s) 14, 44, 233, 291, 552
MslI CAYNNNNRTG 1 cut(s) 260
Msp20I TGGCCA 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 2 cut(s) 90, 340
MvaI CCWGG 2 cut(s) 90, 340
MwoI GCNNNNNNNGC 3 cut(s) 72, 609, 618
NcoI CCATGG 2 cut(s) 272, 420
NdeII GATC 2 cut(s) 176, 252
NlaIII CATG 8 cut(s) 149, 213, 259, 276, 424, 450, 470, 566
NlaIV GGNNCC 3 cut(s) 178, 337, 436
NmuCI GTSAC 1 cut(s) 593
NspI RCATGY 2 cut(s) 213, 470
PciI ACATGT 2 cut(s) 209, 466
PfoI TCCNGGA 1 cut(s) 88
PscI ACATGT 2 cut(s) 209, 466
PsiI TTATAA 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 88, 338
PspGI CCWGG 2 cut(s) 88, 338
PspN4I GGNNCC 3 cut(s) 178, 337, 436
PspPI GGNCC 2 cut(s) 86, 424
PsuI RGATCY 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 2 cut(s) 436, 561
RsaNI GTAC 2 cut(s) 435, 560
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 5 cut(s) 14, 44, 233, 291, 552
Sau3AI GATC 2 cut(s) 176, 252
Sau96I GGNCC 2 cut(s) 86, 424
ScrFI CCNGG 2 cut(s) 90, 340
SduI GDGCHC 3 cut(s) 77, 267, 338
SexAI ACCWGGT 1 cut(s) 338
SfaNI GCATC 1 cut(s) 488
SinI GGWCC 2 cut(s) 86, 424
SmiMI CAYNNNNRTG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 88, 338
StyI CCWWGG 2 cut(s) 272, 420
TaaI ACNGT 4 cut(s) 170, 223, 238, 593
TaiI ACGT 1 cut(s) 318
TasI AATT 1 cut(s) 111
Tru1I TTAA 5 cut(s) 14, 44, 233, 291, 552
Tru9I TTAA 5 cut(s) 14, 44, 233, 291, 552
TscAI CASTG 3 cut(s) 31, 189, 255
TseFI GTSAC 1 cut(s) 593
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 2 cut(s) 17, 374
TspRI CASTG 3 cut(s) 31, 189, 255
VpaK11BI GGWCC 2 cut(s) 86, 424
XapI RAATTY 1 cut(s) 111
XceI RCATGY 2 cut(s) 213, 470
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.