Rh5CG302500

Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016746
Physical Location & Seq
Reverse (-)
33274234 .. 33276662
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG302500.1

Sequence Viewer

Length: 612 bp
ATGATGGTTACTACTTTCATATGGGCTTTGATTATGCTTGTGCTCCTATCTTGGCCTTATGAGAGGATTAGGCAAGGAAATGTGTATGGACATGTTACTGGTAGATTGATGATGTGGATTTTAGGGAATCCTGTACAGATCGAAGGAGCTGAATTCGCTAATAAGAGGGAAATTTTTATCAGTAATCATGCTTCTCCTTTAGATATTTTCCCTATCATGTGGTTGACTCCCACAGGCACTGTTGGTATTGCGAAAAAGGAGGCAGTCGTGAGAAAAAAACTTTCCTTGATCAGATTTCCTGAGGGCACCAGGTCAGCAGATGGAAGACTACTCCCTTTTAAAAAGGGCTTTATTCATCTGGCATTACAAACAGGCCTCCCAATAGTTCCCATTGTCCTTATAGGTACCCATCGAGCATGGAGGAAGGGTAGCTTACGCGTTCGACCAACACCTTTAACGATAAAGTATCTTTCTCCAATAAGCACTGATGATTGGACAGCTGACAAAATTGATGAATACATTAAAATGTTATATGACTTGTATGTCCAACACCTCCCAGACTCACAGTGGCCTCTTGCATTAGCAGAATCCACAAATGGCACCAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 ko04975 map00561 map00564 map01100 map01110 map04072 map04975
Pfam Domains
Protein Families
Acyltransferase

Protein Analysis

203

Amino Acids

23.05

Weight (kDa)

9.8

Isoelectric Point (pI)

27.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 87 - 133 1.4e-11 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016746)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04690
malus_domestica MD03G1201900.v1.1 MD11G1219100.v1.1
rosa_chinensis RchiOBHm_Chr5g0039361
rosa_laevigata RLG00000033907
rosa_multiflora Rmu_sc0006018.1_g000001
rosa_roxburghii Rroxscaffold_1G00040510 Rroxscaffold_1G00041840
rosa_rugosa Rorug05G0178300
rosa_samantha Rh5AG264500 Rh5BG269500 Rh5CG302500 Rh5DG277300
rosa_wichuraiana Rw5G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 542
Acc65I GGTACC 1 cut(s) 404
AccB1I GGYRCC 3 cut(s) 305, 404, 599
AccII CGCG 1 cut(s) 438
AcsI RAATTY 2 cut(s) 152, 171
AfaI GTAC 2 cut(s) 135, 406
AflIII ACRYGT 2 cut(s) 91, 436
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 3 cut(s) 149, 432, 500
AluI AGCT 3 cut(s) 149, 432, 500
Alw21I GWGCWC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 3 cut(s) 53, 373, 569
ApoI RAATTY 2 cut(s) 152, 171
Asp718I GGTACC 1 cut(s) 404
AxyI CCTNAGG 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 308
BanI GGYRCC 3 cut(s) 305, 404, 599
BarI GAAGNNNNNNTAC 2 cut(s) 175, 207
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 2 cut(s) 314, 417
BciT130I CCWGG 1 cut(s) 310
BclI TGATCA 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 310
BmiI GGNNCC 3 cut(s) 307, 406, 601
BmrFI CCNGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bse1I ACTGG 1 cut(s) 103
Bse21I CCTNAGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 438
BshFI GGCC 3 cut(s) 55, 375, 571
BshNI GGYRCC 3 cut(s) 305, 404, 599
BsiHKAI GWGCWC 1 cut(s) 45
BsnI GGCC 3 cut(s) 55, 375, 571
Bsp1286I GDGCHC 2 cut(s) 45, 308
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 2 cut(s) 138, 288
BspANI GGCC 3 cut(s) 55, 375, 571
BspCNI CTCAG 1 cut(s) 292
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 3 cut(s) 307, 406, 601
BspT107I GGYRCC 3 cut(s) 305, 404, 599
BsrGI TGTACA 1 cut(s) 133
BsrI ACTGG 1 cut(s) 103
BssMI GATC 2 cut(s) 138, 288
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 241, 567
BstAUI TGTACA 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 438
BstKTI GATC 2 cut(s) 141, 291
BstMBI GATC 2 cut(s) 138, 288
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 308
BstSLI GKGCMC 1 cut(s) 308
BstUI CGCG 1 cut(s) 438
BstV2I GAAGAC 1 cut(s) 331
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 3 cut(s) 55, 375, 571
BtsIMutI CAGTG 3 cut(s) 237, 483, 572
CaiI CAGNNNCTG 1 cut(s) 239
CsiI ACCWGGT 1 cut(s) 308
Csp6I GTAC 2 cut(s) 134, 405
CviAII CATG 4 cut(s) 92, 188, 217, 417
CviJI RGCY 8 cut(s) 26, 55, 149, 348, 375, 432, 500, 571
CviKI_1 RGCY 8 cut(s) 26, 55, 149, 348, 375, 432, 500, 571
CviQI GTAC 2 cut(s) 134, 405
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 140, 290
DpnII GATC 2 cut(s) 138, 288
DraI TTTAAA 1 cut(s) 340
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
Eco147I AGGCCT 1 cut(s) 375
Eco81I CCTNAGG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 308
FaeI CATG 4 cut(s) 95, 191, 220, 420
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 4 cut(s) 91, 187, 216, 416
FauNDI CATATG 1 cut(s) 20
FbaI TGATCA 1 cut(s) 288
HaeIII GGCC 3 cut(s) 55, 375, 571
Hin1II CATG 4 cut(s) 95, 191, 220, 420
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 4 cut(s) 127, 226, 560, 587
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 293
Hpy188III TCNNGA 2 cut(s) 268, 299
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 137, 418
HpyCH4III ACNGT 2 cut(s) 241, 567
HpyCH4V TGCA 1 cut(s) 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 4 cut(s) 95, 191, 220, 420
KpnI GGTACC 1 cut(s) 408
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 138, 288
LmnI GCTCC 2 cut(s) 48, 146
LpnPI CCDG 9 cut(s) 84, 144, 219, 295, 312, 322, 344, 357, 570
MabI ACCWGGT 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 7, 94
MalI GATC 2 cut(s) 140, 290
MboI GATC 2 cut(s) 138, 288
MboII GAAGA 1 cut(s) 336
MhlI GDGCHC 2 cut(s) 45, 308
MluCI AATT 3 cut(s) 152, 171, 507
MluI ACGCGT 1 cut(s) 436
MlyI GAGTC 2 cut(s) 220, 554
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 8 cut(s) 57, 159, 253, 295, 386, 414, 563, 582
MseI TTAA 3 cut(s) 339, 455, 522
MslI CAYNNNNRTG 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 500
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeI CATATG 1 cut(s) 20
NdeII GATC 2 cut(s) 138, 288
NlaIII CATG 4 cut(s) 95, 191, 220, 420
NlaIV GGNNCC 3 cut(s) 307, 406, 601
NspI RCATGY 1 cut(s) 95
PceI AGGCCT 1 cut(s) 375
PciI ACATGT 1 cut(s) 91
PfeI GAWTC 2 cut(s) 127, 587
PleI GAGTC 2 cut(s) 220, 554
PpsI GAGTC 2 cut(s) 220, 554
PscI ACATGT 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 3 cut(s) 307, 406, 601
PstNI CAGNNNCTG 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 2 cut(s) 135, 406
RsaNI GTAC 2 cut(s) 134, 405
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 3 cut(s) 339, 455, 522
Sau3AI GATC 2 cut(s) 138, 288
SchI GAGTC 2 cut(s) 220, 554
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 2 cut(s) 45, 308
SetI ASST 7 cut(s) 151, 314, 406, 434, 454, 502, 555
SexAI ACCWGGT 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 524
Sse9I AATT 3 cut(s) 152, 171, 507
SseBI AGGCCT 1 cut(s) 375
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 241, 567
TaqI TCGA 3 cut(s) 141, 412, 442
TasI AATT 3 cut(s) 152, 171, 507
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 2 cut(s) 127, 587
Tru1I TTAA 3 cut(s) 339, 455, 522
Tru9I TTAA 3 cut(s) 339, 455, 522
TscAI CASTG 3 cut(s) 244, 490, 572
TspDTI ATGAA 3 cut(s) 7, 344, 528
TspRI CASTG 3 cut(s) 244, 490, 572
XapI RAATTY 2 cut(s) 152, 171
XceI RCATGY 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.