Rmu_sc0006018.1_g000001

Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006018.1
Physical Location & Seq
Forward (+)
1 .. 4909
4909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006018.1_g000001.1.cds

Sequence Viewer

Length: 1355 bp
aaggaacatcgaaaattttggagaaggatgtaggacagaagtcgagtcgtctcgaagttgatgtcaatgaagatggttttggttccaaactgatatcttgtgtaagaattgttacgtgtttcgttacgatgatggttactactttgatatgggctttgattatgcttgtgctcctaccttggccttatgagaggattaggcaaggaaatgtgtatggacatgttactggtagattgatgatgcggattttagggaatcctgtacagatcgaaggagctgaattcgctaataagagggcaatttttatcagtaatcatgcttctcctttagatattttccctatcatgtggttgactcccacaggcactgtcggtgtgttcttactagagaaaatgactttagggaaagagcaattactgggatatctttctatgcagatcatatggtatcccctatttggacaactttatgtactggccaaccatcttcgcatagatcgctccaatccaacagcagccattgaatctctgaaagaggcagctcaggcagtcgtgagaaaaaaactttctttgatcatatttcctgagggcaccagtcccagtccaatgattctggcatcacttcatggtaccctgggctttattcatctggcattacaaacaggcctcccaatagttcccattgtccttataggtacccatcgagcatggaggaagggtagcttacgcgttcgaccaacacctttaacaataaagtatctttctccaataagcactgatgattggacagctgataaaattgatgaatacattagaatgttacatgacttgtatgtccaacacctcccagactcacagaggcctcttgcattagcagaatccacaaatgaagacatacccttaggaagcttaccgcgctttactcccggaagacaaccccagtacagtaaatcgtgcataattgaatacgaaatcttttcgcgctttctttgtgtcgtacttcttggtctttgccggaattccgggccccggggaaaagcagaagaggaagaagccagaagaatcaaacaaagaattcatgaatacaatgaagcaagccggaggggcatccggtcaagtacccacattccgattcccaatcatccggggctcctgcaccttctttggcaatccgcttatgaatctcctattgaagagttaaactatgctcgctctggaaagatagagattgaggcaatgatacaagctgcagtagagcagaccggagattcaaggattttgtatgacatccgctcgcttcaagataccgaggggcggccacccatatcatcacttgggattgccgaggccgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

450

Amino Acids

50.48

Weight (kDa)

8.49

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016746)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 832
Acc65I GGTACC 2 cut(s) 628, 694
AccB1I GGYRCC 3 cut(s) 589, 628, 694
AccBSI CCGCTC 1 cut(s) 1292
AccII CGCG 3 cut(s) 728, 915, 981
AciI CCGC 6 cut(s) 243, 913, 1172, 1290, 1314, 1349
AcoI YGGCCR 2 cut(s) 476, 1315
AcsI RAATTY 4 cut(s) 14, 280, 1017, 1073
AfaI GTAC 7 cut(s) 263, 473, 630, 696, 943, 998, 1119
AfiI CCNNNNNNNGG 3 cut(s) 457, 1028, 1313
AflIII ACRYGT 3 cut(s) 115, 219, 726
AgsI TTSAA 5 cut(s) 523, 964, 1192, 1271, 1300
AjnI CCWGG 1 cut(s) 632
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 6 cut(s) 277, 541, 722, 790, 908, 1246
AluI AGCT 6 cut(s) 277, 541, 722, 790, 908, 1246
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 367
Ama87I CYCGRG 1 cut(s) 1028
AoxI GGCC 7 cut(s) 181, 476, 663, 859, 1024, 1315, 1346
ApaI GGGCCC 1 cut(s) 1028
ApeKI GCWGC 3 cut(s) 514, 538, 1246
ApoI RAATTY 4 cut(s) 14, 280, 1017, 1073
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
Asp718I GGTACC 2 cut(s) 628, 694
AspLEI GCGC 2 cut(s) 917, 983
AspS9I GGNCC 2 cut(s) 1024, 1025
AsuC2I CCSGG 5 cut(s) 926, 1023, 1029, 1030, 1145
AvaI CYCGRG 1 cut(s) 1028
AxyI CCTNAGG 2 cut(s) 584, 900
BaeGI GKGCMC 2 cut(s) 592, 1028
BalI TGGCCA 1 cut(s) 478
BanI GGYRCC 3 cut(s) 589, 628, 694
BanII GRGCYC 2 cut(s) 1028, 1151
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BbsI GAAGAC 2 cut(s) 896, 936
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 3 cut(s) 526, 550, 1233
BccI CCATC 4 cut(s) 67, 126, 491, 707
BciT130I CCWGG 1 cut(s) 634
BciVI GTATCC 1 cut(s) 458
BclI TGATCA 1 cut(s) 572
BcnI CCSGG 5 cut(s) 926, 1023, 1029, 1030, 1145
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 385
BfmI CTRYAG 1 cut(s) 1247
BfuI GTATCC 1 cut(s) 458
BglI GCCNNNNNGGC 1 cut(s) 1103
BisI GCNGC 5 cut(s) 515, 539, 1247, 1315, 1349
BlsI GCNGC 5 cut(s) 516, 540, 1248, 1316, 1350
Bme1390I CCNGG 6 cut(s) 634, 926, 1023, 1029, 1030, 1145
BmeT110I CYCGRG 1 cut(s) 1028
BmgT120I GGNCC 2 cut(s) 1024, 1025
BmiI GGNNCC 7 cut(s) 84, 591, 630, 696, 1026, 1027, 1150
BmrFI CCNGG 6 cut(s) 634, 926, 1023, 1029, 1030, 1145
BmrI ACTGGG 3 cut(s) 427, 593, 933
BmsI GCATC 3 cut(s) 230, 625, 1115
BmuI ACTGGG 3 cut(s) 427, 593, 933
BoxI GACNNNNGTC 1 cut(s) 39
BpiI GAAGAC 2 cut(s) 896, 936
Bpu10I CCTNAGC 1 cut(s) 542
BpuMI CCSGG 5 cut(s) 926, 1023, 1029, 1030, 1145
BsaAI YACGTR 1 cut(s) 116
BsaJI CCNNGG 9 cut(s) 178, 632, 633, 1027, 1028, 1029, 1144, 1307, 1343
BsaWI WCCGGW 2 cut(s) 1109, 1261
BsaXI ACNNNNNCTCC 2 cut(s) 702, 732
Bsc4I CCNNNNNNNGG 3 cut(s) 457, 1028, 1313
Bse1I ACTGG 6 cut(s) 231, 422, 479, 593, 599, 939
Bse21I CCTNAGG 2 cut(s) 584, 900
Bse3DI GCAATG 1 cut(s) 1241
BseBI CCWGG 1 cut(s) 634
BseDI CCNNGG 9 cut(s) 178, 632, 633, 1027, 1028, 1029, 1144, 1307, 1343
BseGI GGATG 4 cut(s) 33, 1106, 1140, 1286
BseLI CCNNNNNNNGG 3 cut(s) 457, 1028, 1313
BseMI GCAATG 1 cut(s) 1241
BseMII CTCAG 2 cut(s) 556, 575
BseNI ACTGG 6 cut(s) 231, 422, 479, 593, 599, 939
BseSI GKGCMC 2 cut(s) 592, 1028
BseXI GCAGC 3 cut(s) 526, 550, 1233
BsgI GTGCAG 1 cut(s) 1138
Bsh1236I CGCG 3 cut(s) 728, 915, 981
BshFI GGCC 7 cut(s) 183, 478, 665, 861, 1026, 1317, 1348
BshNI GGYRCC 3 cut(s) 589, 628, 694
BsiHKAI GWGCWC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 1028
BsiSI CCGG 8 cut(s) 926, 1014, 1022, 1029, 1098, 1110, 1144, 1262
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 3 cut(s) 457, 1028, 1313
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 7 cut(s) 183, 478, 665, 861, 1026, 1317, 1348
BsoBI CYCGRG 1 cut(s) 1028
Bsp120I GGGCCC 1 cut(s) 1024
Bsp1286I GDGCHC 4 cut(s) 173, 592, 1028, 1151
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 4 cut(s) 266, 437, 495, 572
BspACI CCGC 6 cut(s) 243, 913, 1172, 1290, 1314, 1349
BspANI GGCC 7 cut(s) 183, 478, 665, 861, 1026, 1317, 1348
BspCNI CTCAG 2 cut(s) 555, 576
BspFNI CGCG 3 cut(s) 728, 915, 981
BspHI TCATGA 1 cut(s) 1077
BspLI GGNNCC 7 cut(s) 84, 591, 630, 696, 1026, 1027, 1150
BspMAI CTGCAG 1 cut(s) 1251
BspT107I GGYRCC 3 cut(s) 589, 628, 694
BsrBI CCGCTC 1 cut(s) 1292
BsrDI GCAATG 1 cut(s) 1241
BsrGI TGTACA 1 cut(s) 261
BsrI ACTGG 6 cut(s) 231, 422, 479, 593, 599, 939
BssECI CCNNGG 9 cut(s) 178, 632, 633, 1027, 1028, 1029, 1144, 1307, 1343
BssMI GATC 4 cut(s) 266, 437, 495, 572
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 2 cut(s) 369, 946
Bst6I CTCTTC 2 cut(s) 1037, 1187
BstAUI TGTACA 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 1095, 1209, 1294
BstDEI CTNAG 4 cut(s) 542, 584, 900, 1352
BstF5I GGATG 4 cut(s) 33, 1106, 1140, 1286
BstFNI CGCG 3 cut(s) 728, 915, 981
BstHHI GCGC 2 cut(s) 917, 983
BstKTI GATC 4 cut(s) 269, 440, 498, 575
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 4 cut(s) 266, 437, 495, 572
BstMWI GCNNNNNNNGC 6 cut(s) 283, 497, 544, 914, 1103, 1348
BstNI CCWGG 1 cut(s) 634
BstNSI RCATGY 1 cut(s) 223
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 6 cut(s) 632, 924, 1021, 1027, 1028, 1143
BstSFI CTRYAG 1 cut(s) 1247
BstSLI GKGCMC 2 cut(s) 592, 1028
BstUI CGCG 3 cut(s) 728, 915, 981
BstV1I GCAGC 3 cut(s) 526, 550, 1233
BstV2I GAAGAC 2 cut(s) 896, 936
Bsu36I CCTNAGG 2 cut(s) 584, 900
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 7 cut(s) 183, 478, 665, 861, 1026, 1317, 1348
BtsCI GGATG 4 cut(s) 33, 1106, 1140, 1286
BtsIMutI CAGTG 2 cut(s) 365, 773
Cac8I GCNNGC 3 cut(s) 1095, 1209, 1294
CaiI CAGNNNCTG 1 cut(s) 367
CciI TCATGA 1 cut(s) 1077
CfoI GCGC 2 cut(s) 917, 983
Cfr13I GGNCC 2 cut(s) 1024, 1025
Cfr9I CCCGGG 1 cut(s) 1028
Csp6I GTAC 7 cut(s) 262, 472, 629, 695, 942, 997, 1118
CviAII CATG 7 cut(s) 220, 316, 345, 625, 707, 823, 1078
CviQI GTAC 7 cut(s) 262, 472, 629, 695, 942, 997, 1118
DdeI CTNAG 4 cut(s) 542, 584, 900, 1352
DpnI GATC 4 cut(s) 268, 439, 497, 574
DpnII GATC 4 cut(s) 266, 437, 495, 572
DrdI GACNNNNNNGTC 1 cut(s) 832
DseDI GACNNNNNNGTC 1 cut(s) 832
EaeI YGGCCR 2 cut(s) 476, 1315
Eam1104I CTCTTC 2 cut(s) 1037, 1187
EarI CTCTTC 2 cut(s) 1037, 1187
Eco130I CCWWGG 1 cut(s) 178
Eco147I AGGCCT 2 cut(s) 665, 861
Eco24I GRGCYC 2 cut(s) 1028, 1151
Eco32I GATATC 2 cut(s) 95, 424
Eco81I CCTNAGG 2 cut(s) 584, 900
Eco88I CYCGRG 1 cut(s) 1028
EcoO109I RGGNCCY 1 cut(s) 1025
EcoRI GAATTC 3 cut(s) 280, 1017, 1073
EcoRII CCWGG 1 cut(s) 632
EcoRV GATATC 2 cut(s) 95, 424
EcoT14I CCWWGG 1 cut(s) 178
EcoT38I GRGCYC 2 cut(s) 1028, 1151
ErhI CCWWGG 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 7 cut(s) 223, 319, 348, 628, 710, 826, 1081
FalI AAGNNNNNCTT 2 cut(s) 706, 738
FaqI GGGAC 1 cut(s) 581
FatI CATG 7 cut(s) 219, 315, 344, 624, 706, 822, 1077
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 572
Fnu4HI GCNGC 5 cut(s) 515, 539, 1247, 1315, 1349
FokI GGATG 4 cut(s) 40, 1093, 1127, 1273
FriOI GRGCYC 2 cut(s) 1028, 1151
Fsp4HI GCNGC 5 cut(s) 515, 539, 1247, 1315, 1349
FspBI CTAG 1 cut(s) 385
GlaI GCGC 2 cut(s) 916, 982
GluI GCNGC 5 cut(s) 515, 539, 1247, 1315, 1349
HaeIII GGCC 7 cut(s) 183, 478, 665, 861, 1026, 1317, 1348
HapII CCGG 8 cut(s) 926, 1014, 1022, 1029, 1098, 1110, 1144, 1262
HhaI GCGC 2 cut(s) 917, 983
Hin1II CATG 7 cut(s) 223, 319, 348, 628, 710, 826, 1081
Hin6I GCGC 2 cut(s) 915, 981
HinP1I GCGC 2 cut(s) 915, 981
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HindIII AAGCTT 1 cut(s) 906
HpaII CCGG 8 cut(s) 926, 1014, 1022, 1029, 1098, 1110, 1144, 1262
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 530, 1130
Hpy188III TCNNGA 6 cut(s) 52, 552, 583, 1078, 1214, 1300
Hpy8I GTNNAC 1 cut(s) 353
HpyAV CCTTC 4 cut(s) 18, 265, 708, 1168
HpyCH4III ACNGT 2 cut(s) 369, 946
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 5 cut(s) 435, 868, 956, 1155, 1249
HpyF10VI GCNNNNNNNGC 6 cut(s) 283, 497, 544, 914, 1103, 1348
HpyF3I CTNAG 4 cut(s) 542, 584, 900, 1352
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 7 cut(s) 223, 319, 348, 628, 710, 826, 1081
HspAI GCGC 2 cut(s) 915, 981
KpnI GGTACC 2 cut(s) 632, 698
Ksp22I TGATCA 1 cut(s) 572
Kzo9I GATC 4 cut(s) 266, 437, 495, 572
LmnI GCTCC 4 cut(s) 176, 274, 505, 1154
Lsp1109I GCAGC 3 cut(s) 526, 550, 1233
LweI GCATC 3 cut(s) 230, 625, 1115
MaeI CTAG 1 cut(s) 385
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 5 cut(s) 111, 123, 135, 222, 818
MalI GATC 4 cut(s) 268, 439, 497, 574
MbiI CCGCTC 1 cut(s) 1292
MboI GATC 4 cut(s) 266, 437, 495, 572
MboII GAAGA 8 cut(s) 82, 478, 901, 941, 1054, 1060, 1070, 1204
MhlI GDGCHC 4 cut(s) 173, 592, 1028, 1151
MlsI TGGCCA 1 cut(s) 478
MluCI AATT 9 cut(s) 14, 107, 280, 299, 412, 797, 959, 1017, 1073
MluI ACGCGT 1 cut(s) 726
MluNI TGGCCA 1 cut(s) 478
MlyI GAGTC 3 cut(s) 54, 348, 844
MmeI TCCRAC 2 cut(s) 532, 861
Mox20I TGGCCA 1 cut(s) 478
MscI TGGCCA 1 cut(s) 478
MseI TTAA 2 cut(s) 745, 1198
MslI CAYNNNNRTG 1 cut(s) 814
Msp20I TGGCCA 1 cut(s) 478
MspA1I CMGCKG 1 cut(s) 790
MspI CCGG 8 cut(s) 926, 1014, 1022, 1029, 1098, 1110, 1144, 1262
MspR9I CCNGG 6 cut(s) 634, 926, 1023, 1029, 1030, 1145
MvaI CCWGG 1 cut(s) 634
MvnI CGCG 3 cut(s) 728, 915, 981
MwoI GCNNNNNNNGC 6 cut(s) 283, 497, 544, 914, 1103, 1348
NciI CCSGG 5 cut(s) 926, 1023, 1029, 1030, 1145
NdeI CATATG 1 cut(s) 442
NdeII GATC 4 cut(s) 266, 437, 495, 572
NlaIII CATG 7 cut(s) 223, 319, 348, 628, 710, 826, 1081
NlaIV GGNNCC 7 cut(s) 84, 591, 630, 696, 1026, 1027, 1150
NspI RCATGY 1 cut(s) 223
PagI TCATGA 1 cut(s) 1077
PasI CCCWGGG 1 cut(s) 633
PceI AGGCCT 2 cut(s) 665, 861
PciI ACATGT 1 cut(s) 219
PfeI GAWTC 8 cut(s) 255, 523, 609, 877, 1061, 1131, 1180, 1267
PfoI TCCNGGA 1 cut(s) 924
PkrI GCNGC 5 cut(s) 516, 540, 1248, 1316, 1350
PleI GAGTC 3 cut(s) 53, 348, 844
PpsI GAGTC 3 cut(s) 53, 348, 844
Ppu21I YACGTR 1 cut(s) 116
PscI ACATGT 1 cut(s) 219
PshAI GACNNNNGTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 632
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 7 cut(s) 84, 591, 630, 696, 1026, 1027, 1150
PspOMI GGGCCC 1 cut(s) 1024
PspPI GGNCC 2 cut(s) 1024, 1025
PstI CTGCAG 1 cut(s) 1251
PstNI CAGNNNCTG 1 cut(s) 367
PvuII CAGCTG 1 cut(s) 790
RsaI GTAC 7 cut(s) 263, 473, 630, 696, 943, 998, 1119
RsaNI GTAC 7 cut(s) 262, 472, 629, 695, 942, 997, 1118
RseI CAYNNNNRTG 1 cut(s) 814
SaqAI TTAA 2 cut(s) 745, 1198
SatI GCNGC 5 cut(s) 515, 539, 1247, 1315, 1349
Sau3AI GATC 4 cut(s) 266, 437, 495, 572
Sau96I GGNCC 2 cut(s) 1024, 1025
SchI GAGTC 3 cut(s) 54, 348, 844
ScrFI CCNGG 6 cut(s) 634, 926, 1023, 1029, 1030, 1145
SduI GDGCHC 4 cut(s) 173, 592, 1028, 1151
SfaNI GCATC 3 cut(s) 230, 625, 1115
SfcI CTRYAG 1 cut(s) 1247
SmaI CCCGGG 1 cut(s) 1030
SmiMI CAYNNNNRTG 1 cut(s) 814
Sse9I AATT 9 cut(s) 14, 107, 280, 299, 412, 797, 959, 1017, 1073
SseBI AGGCCT 2 cut(s) 665, 861
SsiI CCGC 6 cut(s) 243, 913, 1172, 1290, 1314, 1349
SspMI CTAG 1 cut(s) 385
StuI AGGCCT 2 cut(s) 665, 861
StyD4I CCNGG 6 cut(s) 632, 924, 1021, 1027, 1028, 1143
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 369, 946
TaiI ACGT 1 cut(s) 118
TaqI TCGA 6 cut(s) 10, 43, 53, 269, 702, 732
TasI AATT 9 cut(s) 14, 107, 280, 299, 412, 797, 959, 1017, 1073
TatI WGTACW 3 cut(s) 261, 471, 941
TauI GCSGC 2 cut(s) 1317, 1351
TfiI GAWTC 8 cut(s) 255, 523, 609, 877, 1061, 1131, 1180, 1267
Tru1I TTAA 2 cut(s) 745, 1198
Tru9I TTAA 2 cut(s) 745, 1198
TscAI CASTG 2 cut(s) 372, 780
TseI GCWGC 3 cut(s) 514, 538, 1246
TspDTI ATGAA 9 cut(s) 83, 613, 634, 818, 902, 1066, 1094, 1103, 1193
TspMI CCCGGG 1 cut(s) 1028
TspRI CASTG 2 cut(s) 372, 780
XapI RAATTY 4 cut(s) 14, 280, 1017, 1073
XceI RCATGY 1 cut(s) 223
XmaI CCCGGG 1 cut(s) 1028
XspI CTAG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.