RLG00000033907

Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016746
Physical Location & Seq
Reverse (-)
34011334 .. 34013821
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033907

Sequence Viewer

Length: 942 bp
ATGGAAAATAGTGGAAGCAATTCAATTTTAAGGAATAGGAGCCTTTTGAACTCAAGCTCTAGTCCCACTGCAGAAGGAACATCGAAATTTTTGGAGAAGGATGTAGGTCAGAAGTCGAGTCGTCTCGAAGTTGATGTCAATGAAGATGGTTTTGTTTCCAAACTGATATCTTGTGTAAGAGTTGCTACGTGTTTCGTTACGATGATGGTTACAACTTTGATATGGGCTTTGATTATGCTTGTGCTCCTACCTTGGCCTTATGAGAGGATTAGGCAAGGGAATGTGTATGGACATGTTACTGGTAGATTGATGATGTGGATTTTAGGGAATCCTGTACAGATCGAAGGAGCTGAATTCGCTAATAAGAGGGCAATTTTTATCAGTAATCATGCTTCTCCTTTAGATATTTTCCCTATCATGTGGTTGACTCCCAAAGGCACCGTCGAAAATGAATATAGGGAAACTGGATATCTTTCGACGCAGGTCATATGGTATCCCCTATTTGGACAACTTTATGTACTGGCCAACCATCTTCGCATAGATCGCTCCAATCCAATAGCAGCCATTGAATCTCTGAAAGAGGCAGCTCAGGCAGTCGTGAGAAAAAAACTTTCTTTGATCATATTTCCTGAGGGCACCAGGTCAGCAGATGGAAGACTACTCCCTTTTAAAAAGGGCTTTGTTCATATGGCATTACAAACAGGCCTCCCAATAGTTCCCATTGTCCTTATAGGTACCCATCGAGCATGGAGGAAGGGTAGCTTACGCGTTCGACCAACACCTTTAACAATAAAGTATCTTTCTCCAATAAGCACTGATGATTGGACAGCTGACAAAATTGATGAATACATTAAAATGTTACATGACTTGTATGTCCGACACCTCCCAGACTCACAGAGGCCTCTTGCATTAGCAGAATCCACAAATGGTACCAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 ko04975 map00561 map00564 map01100 map01110 map04072 map04975
Pfam Domains
Protein Families
Acyltransferase

Protein Analysis

314

Amino Acids

35.18

Weight (kDa)

9.45

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 113 - 243 5.6e-28 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016746)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04690
malus_domestica MD03G1201900.v1.1 MD11G1219100.v1.1
rosa_chinensis RchiOBHm_Chr5g0039361
rosa_laevigata RLG00000033907
rosa_multiflora Rmu_sc0006018.1_g000001
rosa_roxburghii Rroxscaffold_1G00040510 Rroxscaffold_1G00041840
rosa_rugosa Rorug05G0178300
rosa_samantha Rh5AG264500 Rh5BG269500 Rh5CG302500 Rh5DG277300
rosa_wichuraiana Rw5G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
Acc36I ACCTGC 1 cut(s) 472
Acc65I GGTACC 2 cut(s) 734, 929
AccB1I GGYRCC 4 cut(s) 437, 635, 734, 929
AccII CGCG 1 cut(s) 768
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 2 cut(s) 86, 353
AfaI GTAC 4 cut(s) 336, 519, 736, 931
AfiI CCNNNNNNNGG 1 cut(s) 503
AflIII ACRYGT 3 cut(s) 188, 292, 766
AgsI TTSAA 3 cut(s) 24, 49, 569
AjnI CCWGG 1 cut(s) 638
AluBI AGCT 5 cut(s) 57, 350, 587, 762, 830
AluI AGCT 5 cut(s) 57, 350, 587, 762, 830
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 128
AoxI GGCC 4 cut(s) 254, 522, 703, 899
ApeKI GCWGC 2 cut(s) 560, 584
ApoI RAATTY 2 cut(s) 86, 353
ArsI GACNNNNNNTTYG 4 cut(s) 120, 152, 426, 458
Asp700I GAANNNNTTC 1 cut(s) 19
Asp718I GGTACC 2 cut(s) 734, 929
AxyI CCTNAGG 1 cut(s) 630
BaeGI GKGCMC 1 cut(s) 638
BalI TGGCCA 1 cut(s) 524
BanI GGYRCC 4 cut(s) 437, 635, 734, 929
BarI GAAGNNNNNNTAC 2 cut(s) 376, 408
BbsI GAAGAC 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 572, 596
BccI CCATC 5 cut(s) 140, 199, 537, 644, 747
BciT130I CCWGG 1 cut(s) 640
BciVI GTATCC 1 cut(s) 504
BclI TGATCA 1 cut(s) 618
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 472
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 2 cut(s) 561, 585
BlsI GCNGC 2 cut(s) 562, 586
Bme1390I CCNGG 1 cut(s) 640
BmiI GGNNCC 5 cut(s) 41, 439, 637, 736, 931
BmrFI CCNGG 1 cut(s) 640
BoxI GACNNNNGTC 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 661
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 742, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 3 cut(s) 304, 469, 525
Bse21I CCTNAGG 1 cut(s) 630
BseBI CCWGG 1 cut(s) 640
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 2 cut(s) 602, 621
BseNI ACTGG 3 cut(s) 304, 469, 525
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 2 cut(s) 572, 596
Bsh1236I CGCG 1 cut(s) 768
BshFI GGCC 4 cut(s) 256, 524, 705, 901
BshNI GGYRCC 4 cut(s) 437, 635, 734, 929
BsiHKAI GWGCWC 1 cut(s) 246
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 4 cut(s) 256, 524, 705, 901
Bsp1286I GDGCHC 2 cut(s) 246, 638
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 339, 541, 618
BspANI GGCC 4 cut(s) 256, 524, 705, 901
BspCNI CTCAG 2 cut(s) 601, 622
BspFNI CGCG 1 cut(s) 768
BspLI GGNNCC 5 cut(s) 41, 439, 637, 736, 931
BspMAI CTGCAG 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 472
BspT107I GGYRCC 4 cut(s) 437, 635, 734, 929
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 3 cut(s) 304, 469, 525
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 3 cut(s) 339, 541, 618
BssT1I CCWWGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 640
Bst4CI ACNGT 1 cut(s) 442
BstAUI TGTACA 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 588, 630
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 768
BstKTI GATC 3 cut(s) 342, 544, 621
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 339, 541, 618
BstMWI GCNNNNNNNGC 3 cut(s) 356, 543, 590
BstNI CCWGG 1 cut(s) 640
BstNSI RCATGY 1 cut(s) 296
BstPAI GACNNNNGTC 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 638
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 638
BstUI CGCG 1 cut(s) 768
BstV1I GCAGC 2 cut(s) 572, 596
BstV2I GAAGAC 1 cut(s) 661
Bsu36I CCTNAGG 1 cut(s) 630
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 4 cut(s) 256, 524, 705, 901
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 813
BveI ACCTGC 1 cut(s) 472
CseI GACGC 1 cut(s) 487
CsiI ACCWGGT 1 cut(s) 638
Csp6I GTAC 4 cut(s) 335, 518, 735, 930
CviAII CATG 5 cut(s) 293, 389, 418, 747, 863
CviQI GTAC 4 cut(s) 335, 518, 735, 930
DdeI CTNAG 2 cut(s) 588, 630
DpnI GATC 3 cut(s) 341, 543, 620
DpnII GATC 3 cut(s) 339, 541, 618
DraI TTTAAA 1 cut(s) 670
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
EaeI YGGCCR 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 251
Eco147I AGGCCT 2 cut(s) 705, 901
Eco32I GATATC 2 cut(s) 168, 470
Eco81I CCTNAGG 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 638
EcoRV GATATC 2 cut(s) 168, 470
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 5 cut(s) 296, 392, 421, 750, 866
FalI AAGNNNNNCTT 2 cut(s) 746, 778
FaqI GGGAC 1 cut(s) 48
FatI CATG 5 cut(s) 292, 388, 417, 746, 862
FauNDI CATATG 2 cut(s) 488, 687
FbaI TGATCA 1 cut(s) 618
Fnu4HI GCNGC 2 cut(s) 561, 585
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 561, 585
FspBI CTAG 1 cut(s) 60
GluI GCNGC 2 cut(s) 561, 585
HaeIII GGCC 4 cut(s) 256, 524, 705, 901
HgaI GACGC 1 cut(s) 487
Hin1II CATG 5 cut(s) 296, 392, 421, 750, 866
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 6 cut(s) 118, 328, 427, 569, 890, 917
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 3 cut(s) 111, 576, 878
Hpy188III TCNNGA 3 cut(s) 125, 598, 629
Hpy8I GTNNAC 1 cut(s) 426
Hpy99I CGWCG 2 cut(s) 446, 481
HpyAV CCTTC 4 cut(s) 68, 91, 338, 748
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 2 cut(s) 71, 908
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 543, 590
HpyF3I CTNAG 2 cut(s) 588, 630
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 5 cut(s) 296, 392, 421, 750, 866
KpnI GGTACC 2 cut(s) 738, 933
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 3 cut(s) 339, 541, 618
LmnI GCTCC 4 cut(s) 39, 249, 347, 551
Lsp1109I GCAGC 2 cut(s) 572, 596
MabI ACCWGGT 1 cut(s) 638
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 4 cut(s) 196, 208, 295, 858
MalI GATC 3 cut(s) 341, 543, 620
MboI GATC 3 cut(s) 339, 541, 618
MboII GAAGA 3 cut(s) 155, 524, 666
MhlI GDGCHC 2 cut(s) 246, 638
MlsI TGGCCA 1 cut(s) 524
MluCI AATT 6 cut(s) 19, 24, 86, 353, 372, 837
MluI ACGCGT 1 cut(s) 766
MluNI TGGCCA 1 cut(s) 524
MlyI GAGTC 3 cut(s) 127, 421, 884
MmeI TCCRAC 1 cut(s) 901
MnlI CCTC 9 cut(s) 258, 360, 574, 625, 716, 744, 891, 893, 912
Mox20I TGGCCA 1 cut(s) 524
MroXI GAANNNNTTC 1 cut(s) 19
MscI TGGCCA 1 cut(s) 524
MseI TTAA 4 cut(s) 29, 669, 785, 852
MslI CAYNNNNRTG 1 cut(s) 854
Msp20I TGGCCA 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 830
MspR9I CCNGG 1 cut(s) 640
MvaI CCWGG 1 cut(s) 640
MvnI CGCG 1 cut(s) 768
MwoI GCNNNNNNNGC 3 cut(s) 356, 543, 590
NdeI CATATG 2 cut(s) 488, 687
NdeII GATC 3 cut(s) 339, 541, 618
NlaIII CATG 5 cut(s) 296, 392, 421, 750, 866
NlaIV GGNNCC 5 cut(s) 41, 439, 637, 736, 931
NspI RCATGY 1 cut(s) 296
PceI AGGCCT 2 cut(s) 705, 901
PciI ACATGT 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 3 cut(s) 328, 569, 917
PkrI GCNGC 2 cut(s) 562, 586
PleI GAGTC 3 cut(s) 126, 421, 884
PpsI GAGTC 3 cut(s) 126, 421, 884
Ppu21I YACGTR 1 cut(s) 189
PscI ACATGT 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 638
PspGI CCWGG 1 cut(s) 638
PspN4I GGNNCC 5 cut(s) 41, 439, 637, 736, 931
PstI CTGCAG 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 4 cut(s) 336, 519, 736, 931
RsaNI GTAC 4 cut(s) 335, 518, 735, 930
RseI CAYNNNNRTG 1 cut(s) 854
SaqAI TTAA 4 cut(s) 29, 669, 785, 852
SatI GCNGC 2 cut(s) 561, 585
Sau3AI GATC 3 cut(s) 339, 541, 618
SchI GAGTC 3 cut(s) 127, 421, 884
ScrFI CCNGG 1 cut(s) 640
SduI GDGCHC 2 cut(s) 246, 638
SexAI ACCWGGT 1 cut(s) 638
SfcI CTRYAG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 6 cut(s) 19, 24, 86, 353, 372, 837
SseBI AGGCCT 2 cut(s) 705, 901
SspMI CTAG 1 cut(s) 60
StuI AGGCCT 2 cut(s) 705, 901
StyD4I CCNGG 1 cut(s) 638
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 1 cut(s) 191
TaqI TCGA 8 cut(s) 83, 116, 126, 342, 444, 476, 742, 772
TasI AATT 6 cut(s) 19, 24, 86, 353, 372, 837
TatI WGTACW 2 cut(s) 334, 517
TfiI GAWTC 3 cut(s) 328, 569, 917
Tru1I TTAA 4 cut(s) 29, 669, 785, 852
Tru9I TTAA 4 cut(s) 29, 669, 785, 852
TscAI CASTG 2 cut(s) 73, 820
TseI GCWGC 2 cut(s) 560, 584
TspDTI ATGAA 4 cut(s) 156, 465, 674, 858
TspRI CASTG 2 cut(s) 73, 820
XapI RAATTY 2 cut(s) 86, 353
XceI RCATGY 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.