Rroxscaffold_1G00040510

Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016746
Physical Location & Seq
Reverse (-)
58232715 .. 58235823
3109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040510.1

Sequence Viewer

Length: 921 bp
ATGGAAAATAGTGGAAGCAGTTCAATTTTAAGGAATAGGAGCTTTTTGAACTCAAGCTCTAGTCCCACTGCAGAAGGAACATCGAAATTTTTGGAGAAGGATGTAGGTCAGAAGTCGAGTTGTCTCGAAGTTGATGTCAATGAAGATGGTTTTGTTTCCAAACTGATATCTTGTGTAAGAATTGTTACGTGTTTCGTTACGATGATGGTTACAACTTTGATATGGGCTTTGATTATGCTTGTGCTCCTACCCTGGCCTTATGAGAGGATTAGGCAAGGAAATGTGTACGGACATGTTACTGGTAGATTGATGATGTGGATTTTAGGAAATCCTGTACAGATCGAAGGAGCTGAATTCGCTAATAAGAGGGCAATTTTTATCAGTAATCATGCTTCTCCTTTAGATATTTTCCCTATCATGTGGTTGACTCCCACAGGCACTGTCGGTATTGCGAAAAAGGAGGTCATATGGTATCCCCTATTTGGACAACTTTATGTACTGGCCAACCATCTTCGCATAGATCGCTCCAATCCAACAGCAGCCATTGAATCTCTGAAAGAGGCAGCTCAGGCAGTCGTGAGAAAAAAACTTTCTTTGATCATATTTCCTGAGGGCACCAGGTCAGCAGATGGAAGACTACTCCCTTTTAAAAAGGGCTTTATTCATCTGGCATTACAAACAGGCCTCCCAATAAATCCCATTGTCCTTATAGGTACCCATCGAGCATGGAGGAAGGGTAGCTTACGCGTTCGACCAACACCTTTAACAATAAAGTATCTTTCTCCAATAAGCACTGATGATTGGACAGCTGACAAAATTGATGAATACATCAAAATGTTACATGACTTGTATGTCCAACACCTCCCAGACTCACAGAGGCCTCTTGCATTAGCAGAATCCACAAATGGTACCAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 ko04072 ko04975 map00561 map00564 map01100 map01110 map04072 map04975
Pfam Domains
Protein Families
Acyltransferase

Protein Analysis

306

Amino Acids

34.17

Weight (kDa)

9.4

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 113 - 236 2.2e-30 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016746)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04690
malus_domestica MD03G1201900.v1.1 MD11G1219100.v1.1
rosa_chinensis RchiOBHm_Chr5g0039361
rosa_laevigata RLG00000033907
rosa_multiflora Rmu_sc0006018.1_g000001
rosa_roxburghii Rroxscaffold_1G00040510 Rroxscaffold_1G00041840
rosa_rugosa Rorug05G0178300
rosa_samantha Rh5AG264500 Rh5BG269500 Rh5CG302500 Rh5DG277300
rosa_wichuraiana Rw5G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 851
Acc65I GGTACC 2 cut(s) 713, 908
AccB1I GGYRCC 3 cut(s) 614, 713, 908
AccII CGCG 1 cut(s) 747
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 2 cut(s) 86, 353
AfaI GTAC 5 cut(s) 287, 336, 498, 715, 910
AfiI CCNNNNNNNGG 1 cut(s) 482
AflIII ACRYGT 3 cut(s) 188, 292, 745
AgsI TTSAA 3 cut(s) 24, 49, 548
AjnI CCWGG 2 cut(s) 251, 617
AluBI AGCT 6 cut(s) 42, 57, 350, 566, 741, 809
AluI AGCT 6 cut(s) 42, 57, 350, 566, 741, 809
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 4 cut(s) 254, 501, 682, 878
ApeKI GCWGC 2 cut(s) 539, 563
ApoI RAATTY 2 cut(s) 86, 353
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 19
Asp718I GGTACC 2 cut(s) 713, 908
AxyI CCTNAGG 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 617
BalI TGGCCA 1 cut(s) 503
BanI GGYRCC 3 cut(s) 614, 713, 908
BarI GAAGNNNNNNTAC 2 cut(s) 376, 408
BbsI GAAGAC 1 cut(s) 640
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 551, 575
BccI CCATC 5 cut(s) 140, 199, 516, 623, 726
BciT130I CCWGG 2 cut(s) 253, 619
BciVI GTATCC 1 cut(s) 483
BclI TGATCA 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 69
BfuI GTATCC 1 cut(s) 483
BisI GCNGC 2 cut(s) 540, 564
BlsI GCNGC 2 cut(s) 541, 565
Bme1390I CCNGG 2 cut(s) 253, 619
BmiI GGNNCC 3 cut(s) 616, 715, 910
BmrFI CCNGG 2 cut(s) 253, 619
BpiI GAAGAC 1 cut(s) 640
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 721, 751
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 304, 504
Bse21I CCTNAGG 1 cut(s) 609
BseBI CCWGG 2 cut(s) 253, 619
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMII CTCAG 2 cut(s) 581, 600
BseNI ACTGG 2 cut(s) 304, 504
BseSI GKGCMC 1 cut(s) 617
BseXI GCAGC 2 cut(s) 551, 575
Bsh1236I CGCG 1 cut(s) 747
BshFI GGCC 4 cut(s) 256, 503, 684, 880
BshNI GGYRCC 3 cut(s) 614, 713, 908
BsiHKAI GWGCWC 1 cut(s) 246
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 4 cut(s) 256, 503, 684, 880
Bsp1286I GDGCHC 2 cut(s) 246, 617
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 339, 520, 597
BspANI GGCC 4 cut(s) 256, 503, 684, 880
BspCNI CTCAG 2 cut(s) 580, 601
BspFNI CGCG 1 cut(s) 747
BspLI GGNNCC 3 cut(s) 616, 715, 910
BspMAI CTGCAG 1 cut(s) 73
BspT107I GGYRCC 3 cut(s) 614, 713, 908
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 2 cut(s) 304, 504
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 3 cut(s) 339, 520, 597
Bst2UI CCWGG 2 cut(s) 253, 619
Bst4CI ACNGT 1 cut(s) 442
BstAUI TGTACA 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 567, 609
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 747
BstKTI GATC 3 cut(s) 342, 523, 600
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 339, 520, 597
BstMWI GCNNNNNNNGC 3 cut(s) 356, 522, 569
BstNI CCWGG 2 cut(s) 253, 619
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 251, 617
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 617
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 2 cut(s) 551, 575
BstV2I GAAGAC 1 cut(s) 640
Bsu36I CCTNAGG 1 cut(s) 609
BsuI GTATCC 1 cut(s) 483
BsuRI GGCC 4 cut(s) 256, 503, 684, 880
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 66, 438, 792
CaiI CAGNNNCTG 1 cut(s) 440
CsiI ACCWGGT 1 cut(s) 617
Csp6I GTAC 5 cut(s) 286, 335, 497, 714, 909
CviAII CATG 5 cut(s) 293, 389, 418, 726, 842
CviQI GTAC 5 cut(s) 286, 335, 497, 714, 909
DdeI CTNAG 2 cut(s) 567, 609
DpnI GATC 3 cut(s) 341, 522, 599
DpnII GATC 3 cut(s) 339, 520, 597
DraI TTTAAA 1 cut(s) 649
DrdI GACNNNNNNGTC 1 cut(s) 851
DseDI GACNNNNNNGTC 1 cut(s) 851
EaeI YGGCCR 1 cut(s) 501
Eco147I AGGCCT 2 cut(s) 684, 880
Eco32I GATATC 1 cut(s) 168
Eco81I CCTNAGG 1 cut(s) 609
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 251, 617
EcoRV GATATC 1 cut(s) 168
FaeI CATG 5 cut(s) 296, 392, 421, 729, 845
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FaqI GGGAC 1 cut(s) 48
FatI CATG 5 cut(s) 292, 388, 417, 725, 841
FauNDI CATATG 1 cut(s) 467
FbaI TGATCA 1 cut(s) 597
Fnu4HI GCNGC 2 cut(s) 540, 564
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 540, 564
FspBI CTAG 1 cut(s) 60
GluI GCNGC 2 cut(s) 540, 564
HaeIII GGCC 4 cut(s) 256, 503, 684, 880
Hin1II CATG 5 cut(s) 296, 392, 421, 729, 845
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 4 cut(s) 427, 548, 869, 896
Hpy166II GTNNAC 2 cut(s) 286, 426
Hpy188I TCNGA 2 cut(s) 111, 555
Hpy188III TCNNGA 3 cut(s) 125, 577, 608
Hpy8I GTNNAC 2 cut(s) 286, 426
HpyAV CCTTC 4 cut(s) 68, 91, 338, 727
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 2 cut(s) 71, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 522, 569
HpyF3I CTNAG 2 cut(s) 567, 609
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 5 cut(s) 296, 392, 421, 729, 845
KpnI GGTACC 2 cut(s) 717, 912
Ksp22I TGATCA 1 cut(s) 597
Kzo9I GATC 3 cut(s) 339, 520, 597
LmnI GCTCC 4 cut(s) 39, 249, 347, 530
Lsp1109I GCAGC 2 cut(s) 551, 575
MabI ACCWGGT 1 cut(s) 617
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 5 cut(s) 184, 196, 208, 295, 837
MalI GATC 3 cut(s) 341, 522, 599
MboI GATC 3 cut(s) 339, 520, 597
MboII GAAGA 3 cut(s) 155, 503, 645
MhlI GDGCHC 2 cut(s) 246, 617
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 6 cut(s) 24, 86, 180, 353, 372, 816
MluI ACGCGT 1 cut(s) 745
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 2 cut(s) 421, 863
MmeI TCCRAC 2 cut(s) 557, 880
Mox20I TGGCCA 1 cut(s) 503
MroXI GAANNNNTTC 1 cut(s) 19
MscI TGGCCA 1 cut(s) 503
MseI TTAA 3 cut(s) 29, 648, 764
MslI CAYNNNNRTG 1 cut(s) 833
Msp20I TGGCCA 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 809
MspR9I CCNGG 2 cut(s) 253, 619
MvaI CCWGG 2 cut(s) 253, 619
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 3 cut(s) 356, 522, 569
NdeI CATATG 1 cut(s) 467
NdeII GATC 3 cut(s) 339, 520, 597
NlaIII CATG 5 cut(s) 296, 392, 421, 729, 845
NlaIV GGNNCC 3 cut(s) 616, 715, 910
NspI RCATGY 1 cut(s) 296
PceI AGGCCT 2 cut(s) 684, 880
PciI ACATGT 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 2 cut(s) 548, 896
PkrI GCNGC 2 cut(s) 541, 565
PleI GAGTC 2 cut(s) 421, 863
PpsI GAGTC 2 cut(s) 421, 863
Ppu21I YACGTR 1 cut(s) 189
PscI ACATGT 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 251, 617
PspGI CCWGG 2 cut(s) 251, 617
PspN4I GGNNCC 3 cut(s) 616, 715, 910
PstI CTGCAG 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 440
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 5 cut(s) 287, 336, 498, 715, 910
RsaNI GTAC 5 cut(s) 286, 335, 497, 714, 909
RseI CAYNNNNRTG 1 cut(s) 833
SaqAI TTAA 3 cut(s) 29, 648, 764
SatI GCNGC 2 cut(s) 540, 564
Sau3AI GATC 3 cut(s) 339, 520, 597
SchI GAGTC 2 cut(s) 421, 863
ScrFI CCNGG 2 cut(s) 253, 619
SduI GDGCHC 2 cut(s) 246, 617
SexAI ACCWGGT 1 cut(s) 617
SfcI CTRYAG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 833
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 6 cut(s) 24, 86, 180, 353, 372, 816
SseBI AGGCCT 2 cut(s) 684, 880
SspMI CTAG 1 cut(s) 60
StuI AGGCCT 2 cut(s) 684, 880
StyD4I CCNGG 2 cut(s) 251, 617
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 1 cut(s) 191
TaqI TCGA 6 cut(s) 83, 116, 126, 342, 721, 751
TasI AATT 6 cut(s) 24, 86, 180, 353, 372, 816
TatI WGTACW 2 cut(s) 334, 496
TfiI GAWTC 2 cut(s) 548, 896
Tru1I TTAA 3 cut(s) 29, 648, 764
Tru9I TTAA 3 cut(s) 29, 648, 764
TscAI CASTG 3 cut(s) 73, 445, 799
TseI GCWGC 2 cut(s) 539, 563
TspDTI ATGAA 3 cut(s) 156, 653, 837
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 3 cut(s) 73, 445, 799
XapI RAATTY 2 cut(s) 86, 353
XceI RCATGY 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.